Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0018901

Physical Location & Seq

Genomic Coordinates Reverse (-)

56229116 .. 56230997

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG362900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTTGAGGCGGTGTTGTCACTAGCTTTGGAGAGGACATTGTTAAAAGGGGAAATATTGAGCTGCTATATGAGCAAGATATACTGGGGACATGGAATATATGGCATTGAATCAGCATCCAAATTCTATTTTGGGAAGCACCCATCTCTTCTAAGTTTGGGGGAGTCTGCATTCCTTGCTGGACTAATACCTGCCCCAGAACTTCGATCACCACTCAGGGATGCTTCTAGGGGAAAAACGTTCCAAGCCAGAGTTTTGAAGAGGATGGTGGAAGTAGGCTTTCTTGACATTCGAACAGCTCTTTTAGTCGTGAAACAATTTCTTCCTCTGCAGGTTAATGACGCAGAAGCAAATATTACCTTTCTGCCAGCAGGAGGTACAGATTCTATCTTCAAGGATATATGGGACTGGGAATCAGAAAGCAAAGTATGGGAAGCATGTGAGGACATGGAAAGATGGGCTACTGAGGTTCGCCAAAGGACTTCTGCAAAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

165

Amino Acids

18.61

Weight (kDa)

6.75

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transgly	PF00912	2 - 89	1.8e-23	Transglycosylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0018901)

Species	Orthologous Gene IDs
malus_domestica	MD08G1168300.v1.1
pyrus_communis	pycom08g14380
rosa_multiflora	Rmu_sc0007232.1_g000006
rosa_roxburghii	Rroxscaffold_171G00441450 Rroxscaffold_7G00172600 Rroxscaffold_7G00172620
rosa_samantha	Rh6AG362900 Rh6CG377400 Rh6CG377600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	199, 322
AciI	CCGC	1 cut(s)	11
AclI	AACGTT	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	122
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	110, 259, 394
AluBI	AGCT	3 cut(s)	26, 63, 299
AluI	AGCT	3 cut(s)	26, 63, 299
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	201
AsuII	TTCGAA	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	3 cut(s)	151, 259, 450
BfaI	CTAG	2 cut(s)	23, 228
BfmI	CTRYAG	1 cut(s)	329
BfuAI	ACCTGC	2 cut(s)	199, 322
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
BmrI	ACTGGG	2 cut(s)	94, 418
BmsI	GCATC	2 cut(s)	125, 211
BmuI	ACTGGG	2 cut(s)	94, 418
Bpu14I	TTCGAA	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	89, 413
BseGI	GGATG	3 cut(s)	116, 226, 270
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	2 cut(s)	229, 456
BseNI	ACTGG	2 cut(s)	89, 413
BseXI	GCAGC	1 cut(s)	50
BslFI	GGGAC	2 cut(s)	102, 419
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	102, 419
BsmI	GAATGC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	292
Bsp143I	GATC	1 cut(s)	206
BspACI	CCGC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	228, 457
BspMAI	CTGCAG	1 cut(s)	333
BspMI	ACCTGC	2 cut(s)	199, 322
BspT104I	TTCGAA	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	89, 413
BssMI	GATC	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	153, 254
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	3 cut(s)	152, 215, 465
BstF5I	GGATG	3 cut(s)	116, 226, 270
BstKTI	GATC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 176
BstNSI	RCATGY	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	50
BtsCI	GGATG	3 cut(s)	116, 226, 270
BveI	ACCTGC	2 cut(s)	199, 322
Cac8I	GCNNGC	1 cut(s)	369
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	3 cut(s)	92, 438, 448
CviJI	RGCY	6 cut(s)	26, 63, 248, 279, 299, 461
CviKI_1	RGCY	6 cut(s)	26, 63, 248, 279, 299, 461
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	3 cut(s)	152, 215, 465
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
Eam1104I	CTCTTC	2 cut(s)	153, 254
EarI	CTCTTC	2 cut(s)	153, 254
FaeI	CATG	3 cut(s)	95, 441, 451
FaqI	GGGAC	2 cut(s)	102, 419
FatI	CATG	3 cut(s)	91, 437, 447
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	3 cut(s)	103, 233, 277
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	2 cut(s)	23, 228
GluI	GCNGC	1 cut(s)	64
HgaI	GACGC	1 cut(s)	350
Hin1II	CATG	3 cut(s)	95, 441, 451
HinfI	GANTC	4 cut(s)	110, 164, 383, 413
HphI	GGTGA	1 cut(s)	201
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	2 cut(s)	284, 310
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	3 cut(s)	170, 331, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 176
HpyF3I	CTNAG	3 cut(s)	152, 215, 465
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	95, 441, 451
Kzo9I	GATC	1 cut(s)	206
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	2 cut(s)	125, 211
MaeI	CTAG	2 cut(s)	23, 228
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MboII	GAAGA	4 cut(s)	140, 271, 314, 382
MluCI	AATT	2 cut(s)	122, 317
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	6 cut(s)	27, 255, 336, 368, 436, 460
MseI	TTAA	3 cut(s)	44, 336, 496
Mva1269I	GAATGC	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	72, 176
NdeII	GATC	1 cut(s)	206
NlaIII	CATG	3 cut(s)	95, 441, 451
NmuCI	GTSAC	1 cut(s)	18
NspI	RCATGY	1 cut(s)	441
NspV	TTCGAA	1 cut(s)	292
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	110, 383, 413
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp1406I	AACGTT	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	333
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SaqAI	TTAA	3 cut(s)	44, 336, 496
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	173
SetI	ASST	9 cut(s)	28, 65, 193, 242, 301, 336, 362, 379, 471
SfaNI	GCATC	2 cut(s)	125, 211
SfcI	CTRYAG	1 cut(s)	329
SfuI	TTCGAA	1 cut(s)	292
Sse9I	AATT	2 cut(s)	122, 317
SsiI	CCGC	1 cut(s)	11
SspI	AATATT	2 cut(s)	57, 355
SspMI	CTAG	2 cut(s)	23, 228
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	2 cut(s)	205, 292
TasI	AATT	2 cut(s)	122, 317
TfiI	GAWTC	3 cut(s)	110, 383, 413
Tru1I	TTAA	3 cut(s)	44, 336, 496
Tru9I	TTAA	3 cut(s)	44, 336, 496
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	18
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	1 cut(s)	441
XspI	CTAG	2 cut(s)	23, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.