Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0018901

Physical Location & Seq

Genomic Coordinates Reverse (-)

56438835 .. 56439320

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG377600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAACTTTATCACCACCCATCGTCTTGTAATCTCAACCAAACCATCCCAATTGATCAATACCAGTCACCCAATTTTCCAATCTATCAAACAAAAAGTCACTTCAATTCCCCAATCCCCCACACCCTTTTCTCACATTACAATCTCCAACTCACTATTCCTCCGAGTCCACTCACTTTTCACAACTCCTATCCAAAACCCAACACATTGCCGAAATTCTCCTCCTCTGCCTCCGGCGTCTTACTCCCCCGATTTCCCTCGCCGGTGGCAAACTCTCGTCGCTTTTGCTCCAAAAGCCCAAGCCGAAACCAGCACCTATCCCCCACACGTTGGCGAGCCATTGTTGCTTGTGAGGACAGAAGGTTCTTTAGCCATTGTGGGATTGACCCTGTTGGGCTTGCCCGCGCACTGGTCTCCTTTTCCGCCCTTGGTGGTGGCAGAACAATCACCTAGCAGGTACAGTAATCCGTGCACACCATGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0008144 GO:0008658 GO:0031406 GO:0033218 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0097159 GO:1901363 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transgly Transpeptidase

Protein Analysis

161

Amino Acids

17.74

Weight (kDa)

9.73

Isoelectric Point (pI)

62.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018901)

Species	Orthologous Gene IDs
malus_domestica	MD08G1168300.v1.1
pyrus_communis	pycom08g14380
rosa_multiflora	Rmu_sc0007232.1_g000006
rosa_roxburghii	Rroxscaffold_171G00441450 Rroxscaffold_7G00172600 Rroxscaffold_7G00172620
rosa_samantha	Rh6AG362900 Rh6CG377400 Rh6CG377600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	444
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccII	CGCG	1 cut(s)	404
AciI	CCGC	2 cut(s)	402, 422
AcsI	RAATTY	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	236
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	2 cut(s)	329, 408
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AloI	GAACNNNNNNTCC	2 cut(s)	346, 378
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	1 cut(s)	417
Alw44I	GTGCAC	1 cut(s)	469
ApaLI	GTGCAC	1 cut(s)	469
ApoI	RAATTY	1 cut(s)	214
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AspLEI	GCGC	1 cut(s)	406
AsuHPI	GGTGA	3 cut(s)	4, 59, 438
BaeGI	GKGCMC	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	473
BccI	CCATC	2 cut(s)	27, 52
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 408
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	2 cut(s)	63, 413
Bse3DI	GCAATG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	329, 408
BseMI	GCAATG	1 cut(s)	205
BseNI	ACTGG	2 cut(s)	63, 413
BseRI	GAGGAG	2 cut(s)	210, 213
BseSI	GKGCMC	1 cut(s)	473
Bsh1236I	CGCG	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	2 cut(s)	233, 262
BslI	CCNNNNNNNGG	2 cut(s)	329, 408
BsmAI	GTCTC	1 cut(s)	417
Bso31I	GGTCTC	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	2 cut(s)	402, 422
BspFNI	CGCG	1 cut(s)	404
BspMI	ACCTGC	1 cut(s)	444
BspTNI	GGTCTC	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	63, 413
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	1 cut(s)	54
BssNI	GRCGYC	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	461
BstACI	GRCGYC	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	335, 398, 402
BstF5I	GGATG	1 cut(s)	44
BstFNI	CGCG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 343
BstSLI	GKGCMC	1 cut(s)	473
BstUI	CGCG	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	406
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	3 cut(s)	335, 398, 402
CfoI	GCGC	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	261
CseI	GACGC	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	1 cut(s)	477
CviJI	RGCY	5 cut(s)	296, 302, 337, 371, 396
CviKI_1	RGCY	5 cut(s)	296, 302, 337, 371, 396
CviQI	GTAC	1 cut(s)	457
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
DraIII	CACNNNGTG	1 cut(s)	479
EciI	GGCGGA	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	426
Eco31I	GGTCTC	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	1 cut(s)	480
FaiI	YATR	1 cut(s)	478
FatI	CATG	1 cut(s)	476
FauI	CCCGC	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	54
FokI	GGATG	1 cut(s)	31
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	1 cut(s)	405
HapII	CCGG	2 cut(s)	233, 262
HgaI	GACGC	1 cut(s)	225
HhaI	GCGC	1 cut(s)	406
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	1 cut(s)	480
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	2 cut(s)	233, 262
HphI	GGTGA	3 cut(s)	4, 59, 438
Hpy166II	GTNNAC	2 cut(s)	169, 471
Hpy188I	TCNGA	1 cut(s)	164
Hpy8I	GTNNAC	2 cut(s)	169, 471
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	1 cut(s)	471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 343
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	480
HspAI	GCGC	1 cut(s)	404
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	7 cut(s)	76, 246, 275, 322, 394, 401, 439
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	65, 97
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MfeI	CAATTG	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	4 cut(s)	50, 72, 105, 214
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	6 cut(s)	170, 231, 234, 240, 267, 345
MspI	CCGG	2 cut(s)	233, 262
MunI	CAATTG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	293, 343
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	1 cut(s)	480
NmuCI	GTSAC	2 cut(s)	65, 97
PflMI	CCANNNNNTGG	1 cut(s)	329
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
Sau3AI	GATC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	5 cut(s)	317, 330, 364, 451, 458
SgrAI	CRCCGGYG	1 cut(s)	261
Sse9I	AATT	4 cut(s)	50, 72, 105, 214
SsiI	CCGC	2 cut(s)	402, 422
SspMI	CTAG	1 cut(s)	450
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	1 cut(s)	330
TasI	AATT	4 cut(s)	50, 72, 105, 214
TscAI	CASTG	1 cut(s)	413
TseFI	GTSAC	2 cut(s)	65, 97
Tsp45I	GTSAC	2 cut(s)	65, 97
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	1 cut(s)	413
Van91I	CCANNNNNTGG	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	469
XapI	RAATTY	1 cut(s)	214
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.