Rh6CG377400

Penicillin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018901
Physical Location & Seq
Reverse (-)
56432974 .. 56434993
2020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG377400.1

Sequence Viewer

Length: 456 bp
ATGGTTGAGGCGGTGTTGTCGCTAGCTTTGGAGAGGACATTGTTAAAAGGGGAGATATTGAGCTGCTATATGAGCAAGATATACTGGGGACATGGAATATATGGCATTGAATCAGCATCCAAATTCTATTTTGGGAAGCACCCATCTCTTCTAAGTTTGGGGGAGTCTGCATTCCTCGCTGGACTAATACCTGCCCCAGAACTTCAATCACCACTCAGGGATGCTTCTAGGGGAAAAACGTTCCAAGCCAGAGTTTTGAAGAGGATGGTGGAAGTAGGCTTTCTTGACATTCGAACAGCTCTTTTAGTCGTGAAACAATTTCTTCCTCTGCAGGAGGTACAGATTCTATCTTCAAGGATATATGGGATTGGGAATCAGAAAGCAAAGTATGGGAATCATGTGAGGACATGGAAAGATGGGCTACTGAGGTTCGCCGAAGGACTTGCAAAGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0008144 GO:0008658 GO:0031406 GO:0033218 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0097159 GO:1901363 GO:1901681
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transgly Transpeptidase

Protein Analysis

151

Amino Acids

16.88

Weight (kDa)

9.85

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transgly PF00912 2 - 89 1.8e-23 Transglycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018901)

Species Orthologous Gene IDs
malus_domestica MD08G1168300.v1.1
pyrus_communis pycom08g14380
rosa_multiflora Rmu_sc0007232.1_g000006
rosa_roxburghii Rroxscaffold_171G00441450 Rroxscaffold_7G00172600 Rroxscaffold_7G00172620
rosa_samantha Rh6AG362900 Rh6CG377400 Rh6CG377600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 199
AciI CCGC 1 cut(s) 11
AclI AACGTT 1 cut(s) 239
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 1 cut(s) 339
AgsI TTSAA 4 cut(s) 110, 206, 259, 354
AluBI AGCT 3 cut(s) 26, 63, 299
AluI AGCT 3 cut(s) 26, 63, 299
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 201
AsuII TTCGAA 1 cut(s) 292
AsuNHI GCTAGC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 50
BccI CCATC 3 cut(s) 151, 259, 410
BcgI CGANNNNNNTGC 1 cut(s) 425
BfaI CTAG 2 cut(s) 23, 228
BfmI CTRYAG 1 cut(s) 329
BfuAI ACCTGC 1 cut(s) 199
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 2 cut(s) 125, 211
BmtI GCTAGC 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 94
Bpu14I TTCGAA 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 89
BseGI GGATG 3 cut(s) 116, 226, 270
BseMII CTCAG 2 cut(s) 229, 416
BseNI ACTGG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 50
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 292
BspACI CCGC 1 cut(s) 11
BspCNI CTCAG 2 cut(s) 228, 417
BspMAI CTGCAG 1 cut(s) 333
BspMI ACCTGC 1 cut(s) 199
BspOI GCTAGC 1 cut(s) 26
BspT104I TTCGAA 1 cut(s) 292
BsrI ACTGG 1 cut(s) 89
Bst6I CTCTTC 2 cut(s) 153, 254
BstBI TTCGAA 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 3 cut(s) 152, 215, 425
BstF5I GGATG 3 cut(s) 116, 226, 270
BstMWI GCNNNNNNNGC 2 cut(s) 72, 176
BstSFI CTRYAG 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 50
BtsCI GGATG 3 cut(s) 116, 226, 270
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 338
CviAII CATG 3 cut(s) 92, 398, 408
CviJI RGCY 6 cut(s) 26, 63, 248, 279, 299, 421
CviKI_1 RGCY 6 cut(s) 26, 63, 248, 279, 299, 421
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 3 cut(s) 152, 215, 425
Eam1104I CTCTTC 2 cut(s) 153, 254
EarI CTCTTC 2 cut(s) 153, 254
FaeI CATG 3 cut(s) 95, 401, 411
FaqI GGGAC 1 cut(s) 102
FatI CATG 3 cut(s) 91, 397, 407
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 3 cut(s) 103, 233, 277
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 2 cut(s) 23, 228
GluI GCNGC 1 cut(s) 64
Hin1II CATG 3 cut(s) 95, 401, 411
HinfI GANTC 5 cut(s) 110, 164, 343, 373, 394
HphI GGTGA 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 378
Hpy188III TCNNGA 2 cut(s) 284, 310
HpyAV CCTTC 1 cut(s) 431
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 3 cut(s) 170, 331, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 176
HpyF3I CTNAG 3 cut(s) 152, 215, 425
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 3 cut(s) 95, 401, 411
LpnPI CCDG 7 cut(s) 70, 165, 202, 204, 210, 262, 317
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 2 cut(s) 125, 211
MaeI CTAG 2 cut(s) 23, 228
MaeII ACGT 1 cut(s) 239
MboII GAAGA 4 cut(s) 140, 271, 314, 342
MluCI AATT 2 cut(s) 122, 317
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 7 cut(s) 27, 185, 255, 328, 336, 396, 420
MseI TTAA 2 cut(s) 44, 454
Mva1269I GAATGC 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 72, 176
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 3 cut(s) 95, 401, 411
NspV TTCGAA 1 cut(s) 292
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 4 cut(s) 110, 343, 373, 394
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp1406I AACGTT 1 cut(s) 239
PstI CTGCAG 1 cut(s) 333
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 44, 454
SatI GCNGC 1 cut(s) 64
SchI GAGTC 1 cut(s) 173
SetI ASST 7 cut(s) 28, 65, 193, 242, 301, 339, 431
SfaNI GCATC 2 cut(s) 125, 211
SfcI CTRYAG 1 cut(s) 329
SfuI TTCGAA 1 cut(s) 292
Sse9I AATT 2 cut(s) 122, 317
SsiI CCGC 1 cut(s) 11
SspMI CTAG 2 cut(s) 23, 228
TaiI ACGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 292
TasI AATT 2 cut(s) 122, 317
TfiI GAWTC 4 cut(s) 110, 343, 373, 394
Tru1I TTAA 2 cut(s) 44, 454
Tru9I TTAA 2 cut(s) 44, 454
TseI GCWGC 1 cut(s) 63
XapI RAATTY 1 cut(s) 122
XspI CTAG 2 cut(s) 23, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.