Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0011224

Physical Location & Seq

Genomic Coordinates Reverse (-)

61272465 .. 61278382

Gene Structure 5918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG419300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCTTCAATTTTGCCTCCGGAAAATCTTTGCTTTTCTTATTGGGCAGGGCTAGTCGTGTTAACTGCCTTAACATTCCTGATTTATCAGATTATGAAGCCCCCGCAGTACTACTCTCAACAAGAACCAAAGGTTGATATTCCTCCAGGAAGTCGAGGATTACCATTGATCGGAGAGACCTTACACTTCATGGCTGCCATTTATAGTGGCAAAGGGTTTTATGAGTTTGTCAGATTGCGCCGTCTCCGATACGGCAAATGCTTCAGGACCAACATATTTGGGGGGACGCATGTCTTTGTGTCAAGCACCAAGTCAGCCAAGGTAATTCTAAACAATGACTCGGGGAAATTCGGGAAGAGATACATAAAATCTATTGCGGAGCTAGTGGGAAATCAAAGCTTGCTTTGTGCTTCACACCAACACCACAAACTACTTCGTGGCCAATTGGGCAGTTTGTTCTCTACAAATTCTCTGTCAGTGTTCATCAAACAGTTCGATCAACTCATTGTTGAAGCTCTAAAAGGCTGGGAACATCAAAGCACTGTGGTTATACAAGATGAAGCGCTCAAGATAACTTGCAAAGCAATGTGTAAGATGTTGTTAAGCGTGGAAAGTGGATACGAATTAGAGGTGTTGCAGAAGGAGGTAGCTCATGTTTGTGAAGCAATGCTTGCATTTCCTCTGAGGTTTCCCGGAACTAGATTTAACAAGGGCCTTCAGGGGAGGAAGAAAATCATGAGCATAATTGATAAAGCAATGAGGGAAAGGAGAGGAAGAAGGTTAAGGGCTGATGAAGATGATTTTCTACAACAAATTTTGAGAAATGAAGCAGGTGGCAATGGGCTAACAGATGAAGAGGTCAAAGACAATATATTAACCATGGTAATTGCAGGTCAAGATACTACAGCCACAGCAGTGACCTGGATGGTCAAATTCTTAGGTGAAAATCCAGAGGTGCTTCACACTCTTATGAAAGAACAACTTGACTTGTGGAGAAAAACTTCGTCAAAGTCATTTTTAACACTGGAAAGTATTAACGAGATGCCGTTTGCTTCGAAGGTAGTAGCTCGTCATATCAGTGAGACACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

363

Amino Acids

41.04

Weight (kDa)

9.24

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	48 - 355	5.8e-31	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19630 AT1G19630 AT1G19630
fragaria_vesca	FvH4_2g39460 FvH4_2g39460 FvH4_2g39460 FvH4_2g39460 FvH4_2g39460
malus_domestica	MD08G1027400.v1.1
prunus_persica	Prupe.1G375900_v2.0.a1
pyrus_communis	pycom08g02130
rosa_chinensis	RchiOBHm_Chr6g0301491
rosa_laevigata	RLG00000011249
rosa_multiflora	Rmu_sc0014417.1_g000022
rosa_roxburghii	Rroxscaffold_7G00166710
rosa_rugosa	Rorug06G0305400
rosa_samantha	Rh6AG419300 Rh6CG432400 Rh6DG418300
rosa_wichuraiana	Rw6G036250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	821
Acc36I	ACCTGC	2 cut(s)	821, 881
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	2 cut(s)	104, 377
AcoI	YGGCCR	1 cut(s)	439
AcsI	RAATTY	4 cut(s)	347, 466, 813, 932
AcuI	CTGAAG	2 cut(s)	247, 701
AfaI	GTAC	1 cut(s)	110
AfeI	AGCGCT	1 cut(s)	564
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	9, 512
AjnI	CCWGG	2 cut(s)	145, 920
AleI	CACNNNNGTG	1 cut(s)	914
AluBI	AGCT	5 cut(s)	382, 399, 515, 650, 1067
AluI	AGCT	5 cut(s)	382, 399, 515, 650, 1067
Alw26I	GTCTC	3 cut(s)	170, 248, 1076
Ama87I	CYCGRG	1 cut(s)	340
Aor13HI	TCCGGA	1 cut(s)	19
Aor51HI	AGCGCT	1 cut(s)	564
AoxI	GGCC	2 cut(s)	439, 712
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	4 cut(s)	347, 466, 813, 932
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
Asp700I	GAANNNNTTC	1 cut(s)	1000
AspLEI	GCGC	2 cut(s)	240, 565
AspS9I	GGNCC	2 cut(s)	267, 712
AsuC2I	CCSGG	1 cut(s)	693
AsuHPI	GGTGA	1 cut(s)	953
AsuII	TTCGAA	1 cut(s)	1055
AvaI	CYCGRG	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	919
BceAI	ACGGC	3 cut(s)	225, 268, 1030
BciT130I	CCWGG	2 cut(s)	147, 922
BciVI	GTATCC	1 cut(s)	611
BcnI	CCSGG	1 cut(s)	693
BcoDI	GTCTC	3 cut(s)	170, 248, 1076
BfaI	CTAG	3 cut(s)	53, 383, 699
BfmI	CTRYAG	1 cut(s)	903
BfoI	RGCGCY	1 cut(s)	566
BfuAI	ACCTGC	2 cut(s)	821, 881
BfuI	GTATCC	1 cut(s)	611
BglI	GCCNNNNNGGC	1 cut(s)	447
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	3 cut(s)	147, 693, 922
Bme18I	GGWCC	1 cut(s)	267
BmeT110I	CYCGRG	1 cut(s)	340
BmgT120I	GGNCC	2 cut(s)	267, 712
BmrFI	CCNGG	3 cut(s)	147, 693, 922
BmsI	GCATC	1 cut(s)	1032
BoxI	GACNNNNGTC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	129
Bpu14I	TTCGAA	1 cut(s)	1055
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	693
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	318, 879
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	1029
Bse3DI	GCAATG	4 cut(s)	591, 672, 762, 844
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	2 cut(s)	147, 922
BseDI	CCNNGG	2 cut(s)	318, 879
BseGI	GGATG	1 cut(s)	930
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	4 cut(s)	591, 672, 762, 844
BseMII	CTCAG	1 cut(s)	674
BseNI	ACTGG	1 cut(s)	1029
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	525
BshFI	GGCC	2 cut(s)	441, 714
BsiHKCI	CYCGRG	1 cut(s)	340
BsiSI	CCGG	2 cut(s)	20, 693
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	3 cut(s)	170, 248, 1076
BsmBI	CGTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	2 cut(s)	441, 714
Bso31I	GGTCTC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	340
Bsp119I	TTCGAA	1 cut(s)	1055
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	168, 496
Bsp19I	CCATGG	1 cut(s)	879
BspACI	CCGC	2 cut(s)	104, 377
BspANI	GGCC	2 cut(s)	441, 714
BspCNI	CTCAG	1 cut(s)	675
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	735
BspMI	ACCTGC	2 cut(s)	821, 881
BspT104I	TTCGAA	1 cut(s)	1055
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	4 cut(s)	591, 672, 762, 844
BsrI	ACTGG	1 cut(s)	1029
BssECI	CCNNGG	2 cut(s)	318, 879
BssMI	GATC	2 cut(s)	168, 496
BssT1I	CCWWGG	2 cut(s)	318, 879
Bst2UI	CCWGG	2 cut(s)	147, 922
Bst4CI	ACNGT	2 cut(s)	492, 544
Bst6I	CTCTTC	2 cut(s)	350, 849
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstBI	TTCGAA	1 cut(s)	1055
BstC8I	GCNNGC	2 cut(s)	401, 672
BstDEI	CTNAG	2 cut(s)	683, 937
BstDSI	CCRYGG	1 cut(s)	879
BstF5I	GGATG	1 cut(s)	930
BstH2I	RGCGCY	1 cut(s)	566
BstHHI	GCGC	2 cut(s)	240, 565
BstKTI	GATC	2 cut(s)	171, 499
BstMAI	GTCTC	3 cut(s)	170, 248, 1076
BstMBI	GATC	2 cut(s)	168, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	447, 671
BstNI	CCWGG	2 cut(s)	147, 922
BstNSI	RCATGY	1 cut(s)	293
BstPAI	GACNNNNGTC	1 cut(s)	290
BstSCI	CCNGG	3 cut(s)	145, 691, 920
BstSFI	CTRYAG	1 cut(s)	903
BstV1I	GCAGC	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	611
BsuRI	GGCC	2 cut(s)	441, 714
BtgI	CCRYGG	1 cut(s)	879
BtsCI	GGATG	1 cut(s)	930
BtsI	GCAGTG	1 cut(s)	921
BtsIMutI	CAGTG	6 cut(s)	483, 540, 921, 1022, 1084, 1087
BveI	ACCTGC	2 cut(s)	821, 881
Cac8I	GCNNGC	2 cut(s)	401, 672
CciI	TCATGA	1 cut(s)	735
CfoI	GCGC	2 cut(s)	240, 565
Cfr13I	GGNCC	2 cut(s)	267, 712
CseI	GACGC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	5 cut(s)	190, 290, 653, 736, 880
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	683, 937
DpnI	GATC	2 cut(s)	170, 498
DpnII	GATC	2 cut(s)	168, 496
EaeI	YGGCCR	1 cut(s)	439
Eam1104I	CTCTTC	2 cut(s)	350, 849
EarI	CTCTTC	2 cut(s)	350, 849
Eco130I	CCWWGG	2 cut(s)	318, 879
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	267
Eco47III	AGCGCT	1 cut(s)	564
Eco57I	CTGAAG	2 cut(s)	247, 701
Eco88I	CYCGRG	1 cut(s)	340
EcoO109I	RGGNCCY	1 cut(s)	712
EcoRII	CCWGG	2 cut(s)	145, 920
EcoT14I	CCWWGG	2 cut(s)	318, 879
ErhI	CCWWGG	2 cut(s)	318, 879
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	5 cut(s)	193, 293, 656, 739, 883
FalI	AAGNNNNNCTT	4 cut(s)	654, 686, 966, 998
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	5 cut(s)	189, 289, 652, 735, 879
FauI	CCCGC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	937
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	3 cut(s)	53, 383, 699
GlaI	GCGC	2 cut(s)	239, 564
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	529
GsuI	CTGGAG	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	566
HaeIII	GGCC	2 cut(s)	441, 714
HapII	CCGG	2 cut(s)	20, 693
HgaI	GACGC	1 cut(s)	295
HhaI	GCGC	2 cut(s)	240, 565
Hin1II	CATG	5 cut(s)	193, 293, 656, 739, 883
Hin6I	GCGC	2 cut(s)	238, 563
HinP1I	GCGC	2 cut(s)	238, 563
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	397
HinfI	GANTC	1 cut(s)	338
HpaI	GTTAAC	1 cut(s)	63
HpaII	CCGG	2 cut(s)	20, 693
HphI	GGTGA	1 cut(s)	953
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	5 cut(s)	90, 173, 233, 248, 684
Hpy188III	TCNNGA	8 cut(s)	20, 79, 265, 352, 568, 736, 896, 950
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	4 cut(s)	634, 725, 771, 1051
HpyCH4III	ACNGT	2 cut(s)	492, 544
HpyCH4V	TGCA	4 cut(s)	579, 637, 674, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	447, 671
HpyF3I	CTNAG	2 cut(s)	683, 937
Hsp92II	CATG	5 cut(s)	193, 293, 656, 739, 883
HspAI	GCGC	2 cut(s)	238, 563
Kpn2I	TCCGGA	1 cut(s)	19
KspAI	GTTAAC	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	168, 496
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	1032
MaeI	CTAG	3 cut(s)	53, 383, 699
MaeIII	GTNAC	1 cut(s)	916
MalI	GATC	2 cut(s)	170, 498
MboI	GATC	2 cut(s)	168, 496
MboII	GAAGA	5 cut(s)	367, 739, 786, 806, 866
MfeI	CAATTG	1 cut(s)	443
MlsI	TGGCCA	1 cut(s)	441
MluNI	TGGCCA	1 cut(s)	441
MlyI	GAGTC	1 cut(s)	332
Mox20I	TGGCCA	1 cut(s)	441
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	1000
MscI	TGGCCA	1 cut(s)	441
MseI	TTAA	8 cut(s)	62, 71, 602, 705, 782, 875, 1019, 1035
MslI	CAYNNNNRTG	4 cut(s)	657, 914, 968, 1077
Msp20I	TGGCCA	1 cut(s)	441
MspI	CCGG	2 cut(s)	20, 693
MspR9I	CCNGG	3 cut(s)	147, 693, 922
MunI	CAATTG	1 cut(s)	443
MvaI	CCWGG	2 cut(s)	147, 922
MwoI	GCNNNNNNNGC	2 cut(s)	447, 671
NciI	CCSGG	1 cut(s)	693
NcoI	CCATGG	1 cut(s)	879
NdeII	GATC	2 cut(s)	168, 496
NlaIII	CATG	5 cut(s)	193, 293, 656, 739, 883
NmuCI	GTSAC	1 cut(s)	916
NspI	RCATGY	1 cut(s)	293
NspV	TTCGAA	1 cut(s)	1055
OliI	CACNNNNGTG	1 cut(s)	914
PagI	TCATGA	1 cut(s)	735
PaqCI	CACCTGC	1 cut(s)	821
PdmI	GAANNNNTTC	1 cut(s)	1000
PfoI	TCCNGGA	2 cut(s)	145, 691
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PshAI	GACNNNNGTC	1 cut(s)	290
Psp6I	CCWGG	2 cut(s)	145, 920
PspFI	CCCAGC	1 cut(s)	525
PspGI	CCWGG	2 cut(s)	145, 920
PspPI	GGNCC	2 cut(s)	267, 712
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	4 cut(s)	657, 914, 968, 1077
SaqAI	TTAA	8 cut(s)	62, 71, 602, 705, 782, 875, 1019, 1035
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	168, 496
Sau96I	GGNCC	2 cut(s)	267, 712
ScaI	AGTACT	1 cut(s)	110
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	3 cut(s)	147, 693, 922
SfaNI	GCATC	1 cut(s)	1032
SfcI	CTRYAG	1 cut(s)	903
SfuI	TTCGAA	1 cut(s)	1055
SinI	GGWCC	1 cut(s)	267
SmiMI	CAYNNNNRTG	4 cut(s)	657, 914, 968, 1077
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SsiI	CCGC	2 cut(s)	104, 377
SspMI	CTAG	3 cut(s)	53, 383, 699
StyD4I	CCNGG	3 cut(s)	145, 691, 920
StyI	CCWWGG	2 cut(s)	318, 879
TaaI	ACNGT	2 cut(s)	492, 544
TaqI	TCGA	3 cut(s)	154, 495, 1055
TatI	WGTACW	1 cut(s)	108
Tru1I	TTAA	8 cut(s)	62, 71, 602, 705, 782, 875, 1019, 1035
Tru9I	TTAA	8 cut(s)	62, 71, 602, 705, 782, 875, 1019, 1035
TscAI	CASTG	5 cut(s)	483, 547, 921, 1029, 1084
TseFI	GTSAC	1 cut(s)	916
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	916
TspDTI	ATGAA	8 cut(s)	110, 178, 472, 573, 807, 840, 867, 986
TspRI	CASTG	5 cut(s)	483, 547, 921, 1029, 1084
VpaK11BI	GGWCC	1 cut(s)	267
XapI	RAATTY	4 cut(s)	347, 466, 813, 932
XceI	RCATGY	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	1000
XspI	CTAG	3 cut(s)	53, 383, 699
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.