Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0011224

Physical Location & Seq

Genomic Coordinates Reverse (-)

60163716 .. 60165563

Gene Structure 1848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG418300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTGTAAGATCTTGTTAAGCGTGGAAAGTGGATACGAATTAGAGGTGTTGCAGAAGGAGGTAGCTCATGTTTGTGAAGCTATGCTTGCATTTCCTCTGAGGTTTCCCGGGACTAGATTTAACAAGGGCCTTCAGGGGAGGAAGAAAATCATGAGCATAATTGATAAAGCAATGAGGGAAAGGAGAGGAAGAAGGTTAAGGGCTGATGAAGATGATTTTCTACAACAAATTTTGAGAAATGAATCAGGTGGCAATGGGCTAACAGATGAAGAGGTCAAAGACAATATATTAACCATGGTAATTGCAGGTCAAGATACTACAGCCACAGCAATGACCTGGATGGTCAAATTCTTAGGTGAAAATCCAGAGGTGCTTCACACTCTTATGAAAGAACAACTTGACTTGTGGAGAAAAACTTCGTCAAAGTCATTTTTAACACTGGAAAGTATTAACGAGATGCCGTTTGCTTCGAAGGTAGTGAAGGAATCCCTAAGGCTGGCTTCGATCGTGCCTTGGTTCCCAAGACTAGCTCTTGAGGATTGCGAGATGGAAGGATTTAGGATCAAGAAAGGGTGGAATGTAAATGTTGATGCTAAATCGGTACACCTTGATCCGACGGTGTACATCGATCCCGGCAAGTTCAATCCCTCGAGGTTTGATGATGAATATTCAAAAGGAGGACACAGAAGGTTCTTAGCTTTTGGGATGGGAGGGAGGACATGTTTGGGGATGAACATGGCTAAGGCTATGATGCTGGTTTTTCTTCACCGTCTCGTCACTACTTACAGGTGGAAGGTGATCGACCAAGATTCAAGCATTGAAAAATGGGGGCTCTTCTCAAAGTTAAGAAGTGGTTGTCCGGTGATTGTGACTCGTATGGACGAAGATATATTACTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

300

Amino Acids

34.33

Weight (kDa)

8.72

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	23 - 271	3.1e-60	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19630 AT1G19630 AT1G19630
fragaria_vesca	FvH4_2g39460 FvH4_2g39460 FvH4_2g39460 FvH4_2g39460 FvH4_2g39460
malus_domestica	MD08G1027400.v1.1
prunus_persica	Prupe.1G375900_v2.0.a1
pyrus_communis	pycom08g02130
rosa_chinensis	RchiOBHm_Chr6g0301491
rosa_laevigata	RLG00000011249
rosa_multiflora	Rmu_sc0014417.1_g000022
rosa_roxburghii	Rroxscaffold_7G00166710
rosa_rugosa	Rorug06G0305400
rosa_samantha	Rh6AG419300 Rh6CG432400 Rh6DG418300
rosa_wichuraiana	Rw6G036250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	649
Acc36I	ACCTGC	1 cut(s)	296
AclWI	GGATC	3 cut(s)	569, 605, 623
AcsI	RAATTY	2 cut(s)	228, 347
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	2 cut(s)	603, 623
AfiI	CCNNNNNNNGG	1 cut(s)	496
AflIII	ACRYGT	1 cut(s)	719
AgsI	TTSAA	4 cut(s)	643, 672, 813, 821
AhlI	ACTAGT	1 cut(s)	895
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	4 cut(s)	65, 80, 530, 698
AluI	AGCT	4 cut(s)	65, 80, 530, 698
Alw26I	GTCTC	1 cut(s)	776
AlwI	GGATC	3 cut(s)	569, 605, 623
Ama87I	CYCGRG	2 cut(s)	107, 649
AoxI	GGCC	1 cut(s)	127
ApoI	RAATTY	2 cut(s)	228, 347
Asp700I	GAANNNNTTC	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	3 cut(s)	108, 109, 633
AsuHPI	GGTGA	4 cut(s)	368, 758, 808, 874
AsuII	TTCGAA	1 cut(s)	470
AvaI	CYCGRG	2 cut(s)	107, 649
AxyI	CCTNAGG	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	834
BarI	GAAGNNNNNNTAC	1 cut(s)	876
BccI	CCATC	3 cut(s)	334, 541, 700
BceAI	ACGGC	1 cut(s)	445
BciT130I	CCWGG	1 cut(s)	337
BciVI	GTATCC	1 cut(s)	26
BcnI	CCSGG	3 cut(s)	108, 109, 633
BcoDI	GTCTC	1 cut(s)	776
BcuI	ACTAGT	1 cut(s)	895
BfaI	CTAG	3 cut(s)	114, 527, 896
BfmI	CTRYAG	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	296
BfuI	GTATCC	1 cut(s)	26
BglII	AGATCT	1 cut(s)	9
Bme1390I	CCNGG	4 cut(s)	108, 109, 337, 633
BmeT110I	CYCGRG	2 cut(s)	107, 649
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	518
BmrFI	CCNGG	4 cut(s)	108, 109, 337, 633
BmsI	GCATC	3 cut(s)	447, 580, 741
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu14I	TTCGAA	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	3 cut(s)	108, 109, 633
Bsa29I	ATCGAT	1 cut(s)	627
BsaJI	CCNNGG	3 cut(s)	107, 294, 512
BsaWI	WCCGGW	1 cut(s)	859
BsaXI	ACNNNNNCTCC	2 cut(s)	706, 736
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse1I	ACTGG	1 cut(s)	444
Bse21I	CCTNAGG	1 cut(s)	491
Bse3DI	GCAATG	3 cut(s)	177, 259, 336
BseBI	CCWGG	1 cut(s)	337
BseCI	ATCGAT	1 cut(s)	627
BseDI	CCNNGG	3 cut(s)	107, 294, 512
BseGI	GGATG	3 cut(s)	345, 711, 735
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMI	GCAATG	3 cut(s)	177, 259, 336
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	444
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	1 cut(s)	129
BshVI	ATCGAT	1 cut(s)	627
BsiEI	CGRYCG	1 cut(s)	507
BsiHKCI	CYCGRG	2 cut(s)	107, 649
BsiSI	CCGG	3 cut(s)	108, 633, 860
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmAI	GTCTC	1 cut(s)	776
BsmBI	CGTCTC	1 cut(s)	776
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	129
BsoBI	CYCGRG	2 cut(s)	107, 649
Bsp119I	TTCGAA	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp1407I	TGTACA	1 cut(s)	621
Bsp143I	GATC	6 cut(s)	9, 504, 561, 610, 628, 798
Bsp19I	CCATGG	1 cut(s)	294
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	90
BspDI	ATCGAT	1 cut(s)	627
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	518
BspMI	ACCTGC	1 cut(s)	296
BspPI	GGATC	3 cut(s)	569, 605, 623
BspQI	GCTCTTC	1 cut(s)	839
BspT104I	TTCGAA	1 cut(s)	470
BsrDI	GCAATG	3 cut(s)	177, 259, 336
BsrGI	TGTACA	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	3 cut(s)	107, 294, 512
BssMI	GATC	6 cut(s)	9, 504, 561, 610, 628, 798
BssT1I	CCWWGG	2 cut(s)	294, 512
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	2 cut(s)	619, 770
Bst6I	CTCTTC	2 cut(s)	264, 839
BstAUI	TGTACA	1 cut(s)	621
BstBI	TTCGAA	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	87, 498
BstDEI	CTNAG	5 cut(s)	98, 352, 491, 694, 741
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	3 cut(s)	345, 711, 735
BstKTI	GATC	6 cut(s)	12, 507, 564, 613, 631, 801
BstMAI	GTCTC	1 cut(s)	776
BstMBI	GATC	6 cut(s)	9, 504, 561, 610, 628, 798
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	337
BstNSI	RCATGY	1 cut(s)	723
BstSCI	CCNGG	4 cut(s)	106, 107, 335, 631
BstSFI	CTRYAG	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
Bsu15I	ATCGAT	1 cut(s)	627
Bsu36I	CCTNAGG	1 cut(s)	491
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	627
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	3 cut(s)	345, 711, 735
BtsIMutI	CAGTG	1 cut(s)	437
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	87, 498
CciI	TCATGA	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	127
Cfr9I	CCCGGG	1 cut(s)	107
ClaI	ATCGAT	1 cut(s)	627
Csp6I	GTAC	2 cut(s)	602, 622
CviAII	CATG	5 cut(s)	68, 151, 295, 720, 736
CviQI	GTAC	2 cut(s)	602, 622
DdeI	CTNAG	5 cut(s)	98, 352, 491, 694, 741
DpnI	GATC	6 cut(s)	11, 506, 563, 612, 630, 800
DpnII	GATC	6 cut(s)	9, 504, 561, 610, 628, 798
Eam1104I	CTCTTC	2 cut(s)	264, 839
EarI	CTCTTC	2 cut(s)	264, 839
Eco130I	CCWWGG	2 cut(s)	294, 512
Eco24I	GRGCYC	1 cut(s)	834
Eco57I	CTGAAG	1 cut(s)	116
Eco81I	CCTNAGG	1 cut(s)	491
Eco88I	CYCGRG	2 cut(s)	107, 649
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	335
EcoT14I	CCWWGG	2 cut(s)	294, 512
EcoT38I	GRGCYC	1 cut(s)	834
ErhI	CCWWGG	2 cut(s)	294, 512
Esp3I	CGTCTC	1 cut(s)	776
FaeI	CATG	5 cut(s)	71, 154, 298, 723, 739
FalI	AAGNNNNNCTT	6 cut(s)	69, 101, 381, 413, 484, 516
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	5 cut(s)	67, 150, 294, 719, 735
FokI	GGATG	3 cut(s)	352, 718, 742
FriOI	GRGCYC	1 cut(s)	834
FspBI	CTAG	3 cut(s)	114, 527, 896
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	3 cut(s)	108, 633, 860
Hin1II	CATG	5 cut(s)	71, 154, 298, 723, 739
HinfI	GANTC	4 cut(s)	242, 485, 809, 871
HpaII	CCGG	3 cut(s)	108, 633, 860
HphI	GGTGA	4 cut(s)	368, 758, 808, 874
Hpy166II	GTNNAC	2 cut(s)	604, 622
Hpy188I	TCNGA	2 cut(s)	99, 615
Hpy188III	TCNNGA	5 cut(s)	151, 311, 365, 533, 565
Hpy8I	GTNNAC	2 cut(s)	604, 622
Hpy99I	CGWCG	1 cut(s)	619
HpyAV	CCTTC	8 cut(s)	49, 140, 186, 466, 475, 545, 681, 787
HpyCH4III	ACNGT	2 cut(s)	619, 770
HpyCH4V	TGCA	3 cut(s)	52, 89, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	5 cut(s)	98, 352, 491, 694, 741
Hsp92II	CATG	5 cut(s)	71, 154, 298, 723, 739
Kzo9I	GATC	6 cut(s)	9, 504, 561, 610, 628, 798
LguI	GCTCTTC	1 cut(s)	839
LweI	GCATC	3 cut(s)	447, 580, 741
MaeI	CTAG	3 cut(s)	114, 527, 896
MaeIII	GTNAC	2 cut(s)	775, 868
MalI	GATC	6 cut(s)	11, 506, 563, 612, 630, 800
MboI	GATC	6 cut(s)	9, 504, 561, 610, 628, 798
MboII	GAAGA	7 cut(s)	154, 201, 221, 281, 755, 826, 896
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	834
MluCI	AATT	5 cut(s)	38, 159, 228, 300, 347
MlyI	GAGTC	1 cut(s)	865
MmeI	TCCRAC	1 cut(s)	638
MroXI	GAANNNNTTC	1 cut(s)	415
MseI	TTAA	7 cut(s)	17, 120, 197, 290, 434, 450, 845
MslI	CAYNNNNRTG	3 cut(s)	72, 329, 383
MspI	CCGG	3 cut(s)	108, 633, 860
MspR9I	CCNGG	4 cut(s)	108, 109, 337, 633
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	3 cut(s)	108, 109, 633
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	6 cut(s)	9, 504, 561, 610, 628, 798
NlaIII	CATG	5 cut(s)	71, 154, 298, 723, 739
NlaIV	GGNNCC	1 cut(s)	518
NmuCI	GTSAC	2 cut(s)	775, 868
NspI	RCATGY	1 cut(s)	723
NspV	TTCGAA	1 cut(s)	470
PaeR7I	CTCGAG	1 cut(s)	649
PagI	TCATGA	1 cut(s)	150
PciI	ACATGT	1 cut(s)	719
PciSI	GCTCTTC	1 cut(s)	839
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	242, 485, 809
Ple19I	CGATCG	1 cut(s)	507
PleI	GAGTC	1 cut(s)	865
PpsI	GAGTC	1 cut(s)	865
PscI	ACATGT	1 cut(s)	719
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	518
PspPI	GGNCC	1 cut(s)	127
PspXI	VCTCGAGB	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	9
PvuI	CGATCG	1 cut(s)	507
RsaI	GTAC	2 cut(s)	603, 623
RsaNI	GTAC	2 cut(s)	602, 622
RseI	CAYNNNNRTG	3 cut(s)	72, 329, 383
SapI	GCTCTTC	1 cut(s)	839
SaqAI	TTAA	7 cut(s)	17, 120, 197, 290, 434, 450, 845
Sau3AI	GATC	6 cut(s)	9, 504, 561, 610, 628, 798
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	865
ScrFI	CCNGG	4 cut(s)	108, 109, 337, 633
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	3 cut(s)	447, 580, 741
SfcI	CTRYAG	1 cut(s)	318
Sfr274I	CTCGAG	1 cut(s)	649
SfuI	TTCGAA	1 cut(s)	470
SlaI	CTCGAG	1 cut(s)	649
SmaI	CCCGGG	1 cut(s)	109
SmiMI	CAYNNNNRTG	3 cut(s)	72, 329, 383
SmlI	CTYRAG	2 cut(s)	533, 649
SmoI	CTYRAG	2 cut(s)	533, 649
SpeI	ACTAGT	1 cut(s)	895
Sse9I	AATT	5 cut(s)	38, 159, 228, 300, 347
SspI	AATATT	1 cut(s)	668
SspMI	CTAG	3 cut(s)	114, 527, 896
StyD4I	CCNGG	4 cut(s)	106, 107, 335, 631
StyI	CCWWGG	2 cut(s)	294, 512
TaaI	ACNGT	2 cut(s)	619, 770
TaqI	TCGA	5 cut(s)	470, 503, 627, 650, 801
TasI	AATT	5 cut(s)	38, 159, 228, 300, 347
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	3 cut(s)	242, 485, 809
Tru1I	TTAA	7 cut(s)	17, 120, 197, 290, 434, 450, 845
Tru9I	TTAA	7 cut(s)	17, 120, 197, 290, 434, 450, 845
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	2 cut(s)	775, 868
Tsp45I	GTSAC	2 cut(s)	775, 868
TspDTI	ATGAA	6 cut(s)	222, 255, 282, 401, 678, 746
TspMI	CCCGGG	1 cut(s)	107
TspRI	CASTG	1 cut(s)	444
XapI	RAATTY	2 cut(s)	228, 347
XceI	RCATGY	1 cut(s)	723
XhoI	CTCGAG	1 cut(s)	649
XmaI	CCCGGG	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	3 cut(s)	114, 527, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.