Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005353

Physical Location & Seq

Genomic Coordinates Forward (+)

68068268 .. 68072782

Gene Structure 4515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG509000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGAGCTTGTCCAAGAAAGGATCCTTTACGAATGACACAAAGCTAGGCGCTGCTGCAAGCAAGGCAACTACTTTAAATCCAAATGCAGCAGAGTTTGTTCCCTTTTCCCTCAGATCTCCTTCATCTGGAAGCACCAGCACACCTCAGGCATTTTCTTCATCTCGAACCTTTGGAAAAGCAGTATTAGATCGAACAGAGTCTTCCACCTCGAATAATTCTGATGACGAGGCCCACCAATATTGGCGCCACCAGCTCCCTGATGATATCACCCCTGACTTTAAGGTCATGGGAGAAGATGAGTCACCAGGTCTTGGAAACATCTCTTTGGCGGGATTGTCCTTGCATGATGACAGTGAAGCAACACACTTTCCTGCTTCTACAGGCAGTGGATACTTATATAATGACATTAATGGTAATAGCTTTTCTGAAAAGTTAAGAGTTGCTACATCCCCCTATGGGGATGATCTTTCCTCGCCCAGTTTCATGCACATGTCAACCAAGCCTTGGGATAAGCAGATTCTGAATAGCAATCAGCTTGTTAGCAATGGTCATGAGGGGTCTCTTTATGATGGCATTTCTAGACATGGATTCATGAATGATATATTGGGTGAGCAACCAGTTGTTGATGATAGCGAAATTAACCCTGCCGATTTTTTGGCTTCACAGTTCCCCGGGTTTTCCTCTCAGAGCCTTGCAGAAGTTTACTTAGCCAATGGTGGTGACTTAAACCTGACTATTGAGATGTTGACTCAGTTGGAGCTTCAAGTTGATGGTGGTTTTAATGAAAATATGAATCCAAAGACCTTGTCAGCTCCTGATCTTAGTTCAATGGACTTTCCTGCACTAACTCCAACAGATGGTCAGCATGGTCATCCAAAATATGTTGGAGACGATGATTTCCAGCAAAGTGGCAATCCATATCGAACTTCTGACAAGGACAGCATGCTGATGTTTAAGTCTAGCTCATCCATTCCGTCTAGAGGTTCAATAGATTTTGCTTCAGCTGTCAGGAAATTGGCGACTCAGGATTCTGGTGGATGGAAGTATGAGAGGAATGGGTCTGCTGATGCTGCTATTGGCTCAAGTAGAGCTTCCCATCTTGTAAATAGCACTTACAATACTGGGCATGGAAGAGCCATCTACAGTGATAGGTCGCAGACTCGTGGTTCAGCTCGGACTGCTCCTGTTTGGCTTGAAACTGGAGATGCTGTTGGTAATGTTCCTTGGTCAACCAAATTACTTCTGTTTATGTCCATTCAGTTGTGGAACAAATCCCTTATCGATTTATACTTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 PAM2 PPR PPR_2 Smr

Protein Analysis

432

Amino Acids

46.68

Weight (kDa)

4.88

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26280 AT2G26280 AT2G26280 AT2G26280 AT2G26280 AT2G26280 AT2G26280
fragaria_vesca	FvH4_2g30791 FvH4_2g30791 FvH4_2g30791 FvH4_2g30791 FvH4_2g30791
malus_domestica	MD08G1046100.v1.1 MD15G1047700.v1.1
prunus_persica	Prupe.1G402100_v2.0.a1 Prupe.1G402100_v2.0.a1 Prupe.1G402100_v2.0.a1
pyrus_communis	pycom08g03810 pycom15g04690
rosa_chinensis	RchiOBHm_Chr6g0312051
rosa_laevigata	RLG00000010357
rosa_multiflora	Rmu_sc0005381.1_g000012
rosa_roxburghii	Rroxscaffold_7G00157090
rosa_rugosa	Rorug06G0392600 Rorug06G0392600
rosa_samantha	Rh6AG509000 Rh6BG520300 Rh6CG526200 Rh6DG511700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	243
AccB7I	CCANNNNNTGG	3 cut(s)	311, 504, 857
AciI	CCGC	1 cut(s)	329
AclWI	GGATC	2 cut(s)	15, 28
AcuI	CTGAAG	1 cut(s)	984
AcyI	GRCGYC	1 cut(s)	244
AfiI	CCNNNNNNNGG	7 cut(s)	125, 311, 456, 457, 504, 857, 980
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	4 cut(s)	764, 828, 987, 1196
AjnI	CCWGG	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	587, 619
Alw26I	GTCTC	2 cut(s)	564, 882
AlwI	GGATC	2 cut(s)	15, 28
AlwNI	CAGNNNCTG	2 cut(s)	520, 815
Ama87I	CYCGRG	1 cut(s)	671
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	4 cut(s)	50, 53, 86, 1070
ArsI	GACNNNNNNTTYG	2 cut(s)	791, 823
AseI	ATTAAT	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	50, 246
AspS9I	GGNCC	1 cut(s)	229
AsuC2I	CCSGG	2 cut(s)	672, 673
AsuHPI	GGTGA	4 cut(s)	259, 294, 620, 731
AvaI	CYCGRG	1 cut(s)	671
AxyI	CCTNAGG	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	1161
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	37, 40, 98, 1057
BccI	CCATC	6 cut(s)	563, 764, 851, 1032, 1104, 1145
BciT130I	CCWGG	1 cut(s)	306
BciVI	GTATCC	1 cut(s)	383
BcnI	CCSGG	2 cut(s)	672, 673
BcoDI	GTCTC	2 cut(s)	564, 882
BfaI	CTAG	4 cut(s)	44, 579, 960, 978
BfmI	CTRYAG	2 cut(s)	378, 1141
BfoI	RGCGCY	2 cut(s)	51, 247
BfuI	GTATCC	1 cut(s)	383
BglII	AGATCT	1 cut(s)	113
BisI	GCNGC	4 cut(s)	51, 54, 87, 1071
BlsI	GCNGC	4 cut(s)	52, 55, 88, 1072
Bme1390I	CCNGG	3 cut(s)	306, 672, 673
BmeT110I	CYCGRG	1 cut(s)	671
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	22, 245
BmrFI	CCNGG	3 cut(s)	306, 672, 673
BmrI	ACTGGG	2 cut(s)	471, 1131
BmsI	GCATC	2 cut(s)	1057, 1195
BmuI	ACTGGG	2 cut(s)	471, 1131
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	1221
BpuEI	CTTGAG	1 cut(s)	1066
BpuMI	CCSGG	2 cut(s)	672, 673
Bsa29I	ATCGAT	1 cut(s)	1281
BsaHI	GRCGYC	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	564
BsaJI	CCNNGG	4 cut(s)	503, 670, 671, 1223
BsaXI	ACNNNNNCTCC	2 cut(s)	1194, 1224
Bsc4I	CCNNNNNNNGG	7 cut(s)	125, 311, 456, 457, 504, 857, 980
Bse1I	ACTGG	4 cut(s)	477, 617, 1126, 1204
Bse21I	CCTNAGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	306
BseCI	ATCGAT	1 cut(s)	1281
BseDI	CCNNGG	4 cut(s)	503, 670, 671, 1223
BseGI	GGATG	5 cut(s)	446, 466, 871, 965, 1043
BseLI	CCNNNNNNNGG	7 cut(s)	125, 311, 456, 457, 504, 857, 980
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	5 cut(s)	124, 158, 698, 764, 1037
BseNI	ACTGG	4 cut(s)	477, 617, 1126, 1204
BseXI	GCAGC	4 cut(s)	37, 40, 98, 1057
BsgI	GTGCAG	1 cut(s)	825
BshFI	GGCC	1 cut(s)	230
BshNI	GGYRCC	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	1281
BsiHKCI	CYCGRG	1 cut(s)	671
BsiSI	CCGG	1 cut(s)	672
BslI	CCNNNNNNNGG	7 cut(s)	125, 311, 456, 457, 504, 857, 980
BsmAI	GTCTC	2 cut(s)	564, 882
BsmBI	CGTCTC	1 cut(s)	882
BsnI	GGCC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	564
BsoBI	CYCGRG	1 cut(s)	671
Bsp143I	GATC	5 cut(s)	20, 113, 187, 463, 817
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	5 cut(s)	123, 157, 697, 763, 1036
BspDI	ATCGAT	1 cut(s)	1281
BspHI	TCATGA	2 cut(s)	550, 591
BspLI	GGNNCC	2 cut(s)	22, 245
BspPI	GGATC	2 cut(s)	15, 28
BspQI	GCTCTTC	1 cut(s)	1126
BspT107I	GGYRCC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	550
BsrI	ACTGG	4 cut(s)	477, 617, 1126, 1204
BssECI	CCNNGG	4 cut(s)	503, 670, 671, 1223
BssMI	GATC	5 cut(s)	20, 113, 187, 463, 817
BssNI	GRCGYC	1 cut(s)	244
BssSI	CACGAG	1 cut(s)	1161
BssT1I	CCWWGG	2 cut(s)	503, 1223
Bst2BI	CACGAG	1 cut(s)	1161
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	3 cut(s)	353, 666, 1145
Bst6I	CTCTTC	1 cut(s)	1126
BstACI	GRCGYC	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	58, 944
BstDEI	CTNAG	7 cut(s)	110, 144, 684, 706, 750, 821, 1023
BstF5I	GGATG	5 cut(s)	446, 466, 871, 965, 1043
BstH2I	RGCGCY	2 cut(s)	51, 247
BstHHI	GCGC	2 cut(s)	50, 246
BstKTI	GATC	5 cut(s)	23, 116, 190, 466, 820
BstMAI	GTCTC	2 cut(s)	564, 882
BstMBI	GATC	5 cut(s)	20, 113, 187, 463, 817
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 250, 1070, 1178
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	2 cut(s)	493, 946
BstSCI	CCNGG	3 cut(s)	304, 670, 671
BstSFI	CTRYAG	2 cut(s)	378, 1141
BstV1I	GCAGC	4 cut(s)	37, 40, 98, 1057
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	20, 113
BstXI	CCANNNNNNTGG	1 cut(s)	908
BstYI	RGATCY	2 cut(s)	20, 113
Bsu15I	ATCGAT	1 cut(s)	1281
Bsu36I	CCTNAGG	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	230
BsuTUI	ATCGAT	1 cut(s)	1281
BtsCI	GGATG	5 cut(s)	446, 466, 871, 965, 1043
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	3 cut(s)	358, 391, 1150
Cac8I	GCNNGC	2 cut(s)	58, 944
CaiI	CAGNNNCTG	2 cut(s)	520, 815
CciI	TCATGA	2 cut(s)	550, 591
CfoI	GCGC	2 cut(s)	50, 246
Cfr13I	GGNCC	1 cut(s)	229
Cfr9I	CCCGGG	1 cut(s)	671
ClaI	ATCGAT	1 cut(s)	1281
CsiI	ACCWGGT	1 cut(s)	304
CspCI	CAANNNNNGTGG	2 cut(s)	221, 256
DdeI	CTNAG	7 cut(s)	110, 144, 684, 706, 750, 821, 1023
DinI	GGCGCC	1 cut(s)	245
DpnI	GATC	5 cut(s)	22, 115, 189, 465, 819
DpnII	GATC	5 cut(s)	20, 113, 187, 463, 817
DraI	TTTAAA	1 cut(s)	75
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	1126
EarI	CTCTTC	1 cut(s)	1126
Eco130I	CCWWGG	2 cut(s)	503, 1223
Eco31I	GGTCTC	1 cut(s)	564
Eco32I	GATATC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	984
Eco81I	CCTNAGG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	265
EcoT14I	CCWWGG	2 cut(s)	503, 1223
EgeI	GGCGCC	1 cut(s)	245
EheI	GGCGCC	1 cut(s)	245
ErhI	CCWWGG	2 cut(s)	503, 1223
Esp3I	CGTCTC	1 cut(s)	882
FalI	AAGNNNNNCTT	2 cut(s)	1075, 1107
FauI	CCCGC	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	51, 54, 87, 1071
FokI	GGATG	5 cut(s)	433, 473, 858, 952, 1050
Fsp4HI	GCNGC	4 cut(s)	51, 54, 87, 1071
FspBI	CTAG	4 cut(s)	44, 579, 960, 978
GlaI	GCGC	2 cut(s)	49, 245
GluI	GCNGC	4 cut(s)	51, 54, 87, 1071
GsuI	CTGGAG	1 cut(s)	1221
HaeII	RGCGCY	2 cut(s)	51, 247
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	672
HhaI	GCGC	2 cut(s)	50, 246
Hin1I	GRCGYC	1 cut(s)	244
Hin6I	GCGC	2 cut(s)	48, 244
HinP1I	GCGC	2 cut(s)	48, 244
HincII	GTYRAC	3 cut(s)	495, 747, 1230
HindII	GTYRAC	3 cut(s)	495, 747, 1230
HinfI	GANTC	9 cut(s)	197, 299, 517, 588, 748, 793, 1021, 1028, 1159
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	4 cut(s)	259, 294, 620, 731
Hpy166II	GTNNAC	4 cut(s)	495, 703, 747, 1230
Hpy188I	TCNGA	7 cut(s)	113, 220, 427, 522, 687, 931, 1176
Hpy188III	TCNNGA	9 cut(s)	126, 162, 551, 579, 592, 815, 978, 1009, 1025
Hpy8I	GTNNAC	4 cut(s)	495, 703, 747, 1230
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	3 cut(s)	353, 666, 1145
HpyCH4V	TGCA	6 cut(s)	56, 86, 343, 487, 695, 842
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 250, 1070, 1178
HpyF3I	CTNAG	7 cut(s)	110, 144, 684, 706, 750, 821, 1023
Hsp92I	GRCGYC	1 cut(s)	244
HspAI	GCGC	2 cut(s)	48, 244
KasI	GGCGCC	1 cut(s)	243
Kzo9I	GATC	5 cut(s)	20, 113, 187, 463, 817
LguI	GCTCTTC	1 cut(s)	1126
LmnI	GCTCC	4 cut(s)	258, 757, 817, 1186
Lsp1109I	GCAGC	4 cut(s)	37, 40, 98, 1057
LweI	GCATC	2 cut(s)	1057, 1195
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	4 cut(s)	44, 579, 960, 978
MaeIII	GTNAC	2 cut(s)	300, 719
MalI	GATC	5 cut(s)	22, 115, 189, 465, 819
MboI	GATC	5 cut(s)	20, 113, 187, 463, 817
MboII	GAAGA	4 cut(s)	147, 192, 305, 1143
MflI	RGATCY	2 cut(s)	20, 113
MluCI	AATT	4 cut(s)	214, 636, 1013, 1235
Mly113I	GGCGCC	1 cut(s)	244
MlyI	GAGTC	5 cut(s)	206, 308, 742, 1015, 1153
MmeI	TCCRAC	3 cut(s)	735, 865, 875
MnlI	CCTC	9 cut(s)	119, 153, 217, 220, 481, 547, 691, 974, 1044
MseI	TTAA	9 cut(s)	74, 279, 408, 434, 639, 725, 780, 954, 1297
MslI	CAYNNNNRTG	2 cut(s)	488, 947
MspA1I	CMGCKG	1 cut(s)	1004
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	3 cut(s)	306, 672, 673
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	4 cut(s)	62, 250, 1070, 1178
NarI	GGCGCC	1 cut(s)	244
NciI	CCSGG	2 cut(s)	672, 673
NdeII	GATC	5 cut(s)	20, 113, 187, 463, 817
NlaIV	GGNNCC	2 cut(s)	22, 245
NmuCI	GTSAC	2 cut(s)	300, 719
NspI	RCATGY	2 cut(s)	493, 946
PaeI	GCATGC	1 cut(s)	946
PagI	TCATGA	2 cut(s)	550, 591
PciI	ACATGT	1 cut(s)	489
PciSI	GCTCTTC	1 cut(s)	1126
PfeI	GAWTC	4 cut(s)	517, 588, 793, 1028
PflFI	GACNNNGTC	1 cut(s)	805
PflMI	CCANNNNNTGG	3 cut(s)	311, 504, 857
PkrI	GCNGC	4 cut(s)	52, 55, 88, 1072
PleI	GAGTC	5 cut(s)	205, 307, 742, 1015, 1153
PluTI	GGCGCC	1 cut(s)	247
PpsI	GAGTC	5 cut(s)	205, 307, 742, 1015, 1153
PscI	ACATGT	1 cut(s)	489
PshBI	ATTAAT	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	22, 245
PspPI	GGNCC	1 cut(s)	229
PstNI	CAGNNNCTG	2 cut(s)	520, 815
PsuI	RGATCY	2 cut(s)	20, 113
PsyI	GACNNNGTC	1 cut(s)	805
PvuII	CAGCTG	1 cut(s)	1004
RseI	CAYNNNNRTG	2 cut(s)	488, 947
SapI	GCTCTTC	1 cut(s)	1126
SaqAI	TTAA	9 cut(s)	74, 279, 408, 434, 639, 725, 780, 954, 1297
SatI	GCNGC	4 cut(s)	51, 54, 87, 1071
Sau3AI	GATC	5 cut(s)	20, 113, 187, 463, 817
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	5 cut(s)	206, 308, 742, 1015, 1153
ScrFI	CCNGG	3 cut(s)	306, 672, 673
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	1057, 1195
SfcI	CTRYAG	2 cut(s)	378, 1141
SfoI	GGCGCC	1 cut(s)	245
SmaI	CCCGGG	1 cut(s)	673
SmiMI	CAYNNNNRTG	2 cut(s)	488, 947
SmlI	CTYRAG	1 cut(s)	1081
SmoI	CTYRAG	1 cut(s)	1081
SphI	GCATGC	1 cut(s)	946
Sse9I	AATT	4 cut(s)	214, 636, 1013, 1235
SsiI	CCGC	1 cut(s)	329
SspDI	GGCGCC	1 cut(s)	243
SspI	AATATT	1 cut(s)	239
SspMI	CTAG	4 cut(s)	44, 579, 960, 978
StyD4I	CCNGG	3 cut(s)	304, 670, 671
StyI	CCWWGG	2 cut(s)	503, 1223
TaaI	ACNGT	3 cut(s)	353, 666, 1145
TaqI	TCGA	5 cut(s)	163, 190, 209, 922, 1281
TasI	AATT	4 cut(s)	214, 636, 1013, 1235
TfiI	GAWTC	4 cut(s)	517, 588, 793, 1028
Tru1I	TTAA	9 cut(s)	74, 279, 408, 434, 639, 725, 780, 954, 1297
Tru9I	TTAA	9 cut(s)	74, 279, 408, 434, 639, 725, 780, 954, 1297
TscAI	CASTG	3 cut(s)	358, 391, 1150
TseFI	GTSAC	2 cut(s)	300, 719
TseI	GCWGC	4 cut(s)	50, 53, 86, 1070
Tsp45I	GTSAC	2 cut(s)	300, 719
TspDTI	ATGAA	7 cut(s)	111, 147, 472, 580, 608, 798, 806
TspGWI	ACGGA	1 cut(s)	963
TspMI	CCCGGG	1 cut(s)	671
TspRI	CASTG	3 cut(s)	358, 391, 1150
Tth111I	GACNNNGTC	1 cut(s)	805
Van91I	CCANNNNNTGG	3 cut(s)	311, 504, 857
VspI	ATTAAT	1 cut(s)	408
XbaI	TCTAGA	2 cut(s)	578, 977
XceI	RCATGY	2 cut(s)	493, 946
XmaI	CCCGGG	1 cut(s)	671
XspI	CTAG	4 cut(s)	44, 579, 960, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.