Rh6DG511700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005353
Physical Location & Seq
Forward (+)
66472362 .. 66476832
4471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG511700.1

Sequence Viewer

Length: 1308 bp
ATGAGCTTGTCCAAGAAAGGATCCTTCACGAATGACACAAAGCTAGGCGCTGCTGCAAGCAAGGCAACTACTTTAAATCCAAATGCAGCAGAGTTTGTTCCCTTTTCCCTCAGATCTCCTTCATCTGGAAGCACCAGCACAGCTCAGGCGGCAACAGCATTTTCTTCATCTGGAAGCTTTGGAAAAGCAGTATTAGATCGAACAGAGTCTTCCACCTCGAATAATTCTGATGATGAGGCCCACCAATATTGGCGCCACCAGCTCCCTGATGATATCACCCCTGACTTTAAGGTCATGGGAGAAGATGAGTCGCCAGGTCTTGGAAACATCTCTTTGGCCGGATTGTCCTTGCATGATGACAGTGAAGCAACACAGTTTCCTGCTTCTACAGGCAGTGGATACTTATATAATGACATTAATGGTAATAGCTTTTCTGAAAAGTTAAGAGTTGCTACATCCCCCTATGGGGAAGATCTTTCCTCGCCCAGTTTCATGCACATGTCAACCAAGCCTTGGGATAAGCAGATTCTGAATAGCAATCAGCTTGCTAGCAATGGTCATGAGGGGTCTCTTTATGATGGCATTTCTAGACATGGATTCATGAATGATATATTGGGTGAGCAACCAGTTGTTGATGATAGCGAAATTAACCCTGCCGAATTTTTGGCTTCACAGTTCCCCGGGTTTTCCACTCAGAGCCTTGCAGAAGTTTACTTTGCCAATGGTGGTGACTTAAACCTGACTATTGAGATGTTGACTCAGTTGGAGCTTCAAGTTGATGGTGGTTTTAATGAAAATATGAATCCAAAGACCTTGTCAGCTCCTGATCTTAGTTCGATGGACTTTCCTGCACTAACTCCAACAGATGGTCAGCATGGTCATCCAAAATATGCTGGAGACGATGATTTCCAGCAAAGTGGCAATCCTTATCGAACTTCTGACAAGGACAGCATGCTGATGTTTAAGTCTAGCTCATCCATTCCGTCTAGAGGTTCAATAGATTTTGCTTCAGCTGTCAGGAAATTGGCGACTCAGGATTCTGGTGGATGGAAGTATGAGAGGAATGGGTCTGCTGATGCCGCTATTGGCTCAAGTAGAGCTTCCCATCTTGTAAATAGCACTTACAATACTGGGCATGGAAGAGCCATCTACAGTGATAGGTCGCAGACTCGTGGTTCAGCTCGGACTGCTCCTGTTTGGCTTGAAACTGGAGATGCTGTTGGTAATGTTCCTTGGTCAACCAAATTACTTCTGTTTATGTCCATTCAGTTGTGGAACAAATCCCTTGTCGATTTATACTTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 PAM2 PPR PPR_2 Smr

Protein Analysis

435

Amino Acids

46.78

Weight (kDa)

4.8

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 252
AccB7I CCANNNNNTGG 3 cut(s) 320, 513, 866
AciI CCGC 2 cut(s) 149, 1080
AclWI GGATC 2 cut(s) 15, 28
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 1 cut(s) 659
AcuI CTGAAG 1 cut(s) 993
AcyI GRCGYC 1 cut(s) 253
AfiI CCNNNNNNNGG 7 cut(s) 125, 320, 465, 466, 513, 866, 989
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 3 cut(s) 773, 996, 1205
AjnI CCWGG 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 596, 628
Alw26I GTCTC 2 cut(s) 573, 891
AlwI GGATC 2 cut(s) 15, 28
AlwNI CAGNNNCTG 2 cut(s) 529, 824
Ama87I CYCGRG 1 cut(s) 680
AoxI GGCC 2 cut(s) 237, 336
ApeKI GCWGC 3 cut(s) 50, 53, 86
ApoI RAATTY 1 cut(s) 659
ArsI GACNNNNNNTTYG 4 cut(s) 800, 832, 1272, 1304
AseI ATTAAT 1 cut(s) 417
AspLEI GCGC 2 cut(s) 50, 255
AspS9I GGNCC 1 cut(s) 238
AsuC2I CCSGG 2 cut(s) 681, 682
AsuHPI GGTGA 3 cut(s) 268, 629, 740
AsuNHI GCTAGC 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 680
BamHI GGATCC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 252
BauI CACGAG 1 cut(s) 1170
BbsI GAAGAC 1 cut(s) 201
BbvI GCAGC 3 cut(s) 37, 40, 98
BccI CCATC 7 cut(s) 572, 773, 832, 860, 1041, 1113, 1154
BciT130I CCWGG 1 cut(s) 315
BciVI GTATCC 1 cut(s) 392
BcnI CCSGG 2 cut(s) 681, 682
BcoDI GTCTC 2 cut(s) 573, 891
BfaI CTAG 5 cut(s) 44, 549, 588, 969, 987
BfmI CTRYAG 2 cut(s) 387, 1150
BfoI RGCGCY 2 cut(s) 51, 256
BfuI GTATCC 1 cut(s) 392
BglII AGATCT 2 cut(s) 113, 472
BisI GCNGC 5 cut(s) 51, 54, 87, 150, 1080
BlsI GCNGC 5 cut(s) 52, 55, 88, 151, 1081
Bme1390I CCNGG 3 cut(s) 315, 681, 682
BmeT110I CYCGRG 1 cut(s) 680
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 22, 254
BmrFI CCNGG 3 cut(s) 315, 681, 682
BmrI ACTGGG 2 cut(s) 480, 1140
BmsI GCATC 2 cut(s) 1066, 1204
BmtI GCTAGC 1 cut(s) 552
BmuI ACTGGG 2 cut(s) 480, 1140
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 2 cut(s) 915, 1230
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 1075
BpuMI CCSGG 2 cut(s) 681, 682
BsaHI GRCGYC 1 cut(s) 253
BsaI GGTCTC 1 cut(s) 573
BsaJI CCNNGG 4 cut(s) 512, 679, 680, 1232
BsaXI ACNNNNNCTCC 2 cut(s) 1203, 1233
Bsc4I CCNNNNNNNGG 7 cut(s) 125, 320, 465, 466, 513, 866, 989
Bse1I ACTGG 4 cut(s) 486, 626, 1135, 1213
Bse3DI GCAATG 1 cut(s) 559
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 4 cut(s) 512, 679, 680, 1232
BseGI GGATG 4 cut(s) 455, 880, 974, 1052
BseLI CCNNNNNNNGG 7 cut(s) 125, 320, 465, 466, 513, 866, 989
BseMI GCAATG 1 cut(s) 559
BseMII CTCAG 5 cut(s) 124, 158, 707, 773, 1046
BseNI ACTGG 4 cut(s) 486, 626, 1135, 1213
BseXI GCAGC 3 cut(s) 37, 40, 98
BsgI GTGCAG 1 cut(s) 834
BshFI GGCC 2 cut(s) 239, 338
BshNI GGYRCC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 680
BsiSI CCGG 2 cut(s) 339, 681
BslI CCNNNNNNNGG 7 cut(s) 125, 320, 465, 466, 513, 866, 989
BsmAI GTCTC 2 cut(s) 573, 891
BsmBI CGTCTC 1 cut(s) 891
BsnI GGCC 2 cut(s) 239, 338
Bso31I GGTCTC 1 cut(s) 573
BsoBI CYCGRG 1 cut(s) 680
Bsp143I GATC 5 cut(s) 20, 113, 196, 472, 826
BspACI CCGC 2 cut(s) 149, 1080
BspANI GGCC 2 cut(s) 239, 338
BspCNI CTCAG 5 cut(s) 123, 157, 706, 772, 1045
BspHI TCATGA 2 cut(s) 559, 600
BspLI GGNNCC 2 cut(s) 22, 254
BspOI GCTAGC 1 cut(s) 552
BspPI GGATC 2 cut(s) 15, 28
BspQI GCTCTTC 1 cut(s) 1135
BspT107I GGYRCC 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 573
BsrDI GCAATG 1 cut(s) 559
BsrI ACTGG 4 cut(s) 486, 626, 1135, 1213
BssECI CCNNGG 4 cut(s) 512, 679, 680, 1232
BssMI GATC 5 cut(s) 20, 113, 196, 472, 826
BssNI GRCGYC 1 cut(s) 253
BssSI CACGAG 1 cut(s) 1170
BssT1I CCWWGG 2 cut(s) 512, 1232
Bst2BI CACGAG 1 cut(s) 1170
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 4 cut(s) 362, 375, 675, 1154
Bst6I CTCTTC 1 cut(s) 1135
BstACI GRCGYC 1 cut(s) 253
BstC8I GCNNGC 4 cut(s) 58, 546, 550, 953
BstDEI CTNAG 6 cut(s) 110, 144, 693, 759, 830, 1032
BstF5I GGATG 4 cut(s) 455, 880, 974, 1052
BstH2I RGCGCY 2 cut(s) 51, 256
BstHHI GCGC 2 cut(s) 50, 255
BstKTI GATC 5 cut(s) 23, 116, 199, 475, 829
BstMAI GTCTC 2 cut(s) 573, 891
BstMBI GATC 5 cut(s) 20, 113, 196, 472, 826
BstMWI GCNNNNNNNGC 6 cut(s) 62, 149, 155, 259, 1079, 1187
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 2 cut(s) 502, 955
BstSCI CCNGG 3 cut(s) 313, 679, 680
BstSFI CTRYAG 2 cut(s) 387, 1150
BstV1I GCAGC 3 cut(s) 37, 40, 98
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 3 cut(s) 20, 113, 472
BstXI CCANNNNNNTGG 1 cut(s) 917
BstYI RGATCY 3 cut(s) 20, 113, 472
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 2 cut(s) 239, 338
BtsCI GGATG 4 cut(s) 455, 880, 974, 1052
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 3 cut(s) 367, 400, 1159
Cac8I GCNNGC 4 cut(s) 58, 546, 550, 953
CaiI CAGNNNCTG 2 cut(s) 529, 824
CciI TCATGA 2 cut(s) 559, 600
CfoI GCGC 2 cut(s) 50, 255
Cfr13I GGNCC 1 cut(s) 238
Cfr9I CCCGGG 1 cut(s) 680
CspCI CAANNNNNGTGG 2 cut(s) 230, 265
DdeI CTNAG 6 cut(s) 110, 144, 693, 759, 830, 1032
DinI GGCGCC 1 cut(s) 254
DpnI GATC 5 cut(s) 22, 115, 198, 474, 828
DpnII GATC 5 cut(s) 20, 113, 196, 472, 826
DraI TTTAAA 1 cut(s) 75
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 1135
EarI CTCTTC 1 cut(s) 1135
Eco130I CCWWGG 2 cut(s) 512, 1232
Eco31I GGTCTC 1 cut(s) 573
Eco32I GATATC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 993
Eco88I CYCGRG 1 cut(s) 680
EcoRII CCWGG 1 cut(s) 313
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 512, 1232
EgeI GGCGCC 1 cut(s) 254
EheI GGCGCC 1 cut(s) 254
ErhI CCWWGG 2 cut(s) 512, 1232
Esp3I CGTCTC 1 cut(s) 891
FalI AAGNNNNNCTT 2 cut(s) 1084, 1116
Fnu4HI GCNGC 5 cut(s) 51, 54, 87, 150, 1080
FokI GGATG 4 cut(s) 442, 867, 961, 1059
Fsp4HI GCNGC 5 cut(s) 51, 54, 87, 150, 1080
FspBI CTAG 5 cut(s) 44, 549, 588, 969, 987
GlaI GCGC 2 cut(s) 49, 254
GluI GCNGC 5 cut(s) 51, 54, 87, 150, 1080
GsuI CTGGAG 2 cut(s) 915, 1230
HaeII RGCGCY 2 cut(s) 51, 256
HaeIII GGCC 2 cut(s) 239, 338
HapII CCGG 2 cut(s) 339, 681
HhaI GCGC 2 cut(s) 50, 255
Hin1I GRCGYC 1 cut(s) 253
Hin6I GCGC 2 cut(s) 48, 253
HinP1I GCGC 2 cut(s) 48, 253
HincII GTYRAC 3 cut(s) 504, 756, 1239
HindII GTYRAC 3 cut(s) 504, 756, 1239
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 9 cut(s) 206, 308, 526, 597, 757, 802, 1030, 1037, 1168
HpaII CCGG 2 cut(s) 339, 681
HphI GGTGA 3 cut(s) 268, 629, 740
Hpy166II GTNNAC 4 cut(s) 504, 712, 756, 1239
Hpy188I TCNGA 7 cut(s) 113, 229, 436, 531, 696, 940, 1185
Hpy8I GTNNAC 4 cut(s) 504, 712, 756, 1239
HpyAV CCTTC 2 cut(s) 34, 129
HpyCH4III ACNGT 4 cut(s) 362, 375, 675, 1154
HpyCH4V TGCA 6 cut(s) 56, 86, 352, 496, 704, 851
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 149, 155, 259, 1079, 1187
HpyF3I CTNAG 6 cut(s) 110, 144, 693, 759, 830, 1032
Hsp92I GRCGYC 1 cut(s) 253
HspAI GCGC 2 cut(s) 48, 253
KasI GGCGCC 1 cut(s) 252
Kzo9I GATC 5 cut(s) 20, 113, 196, 472, 826
LguI GCTCTTC 1 cut(s) 1135
LmnI GCTCC 4 cut(s) 267, 766, 826, 1195
Lsp1109I GCAGC 3 cut(s) 37, 40, 98
LweI GCATC 2 cut(s) 1066, 1204
MaeI CTAG 5 cut(s) 44, 549, 588, 969, 987
MaeIII GTNAC 1 cut(s) 728
MalI GATC 5 cut(s) 22, 115, 198, 474, 828
MboI GATC 5 cut(s) 20, 113, 196, 472, 826
MboII GAAGA 5 cut(s) 156, 201, 314, 482, 1152
MflI RGATCY 3 cut(s) 20, 113, 472
MluCI AATT 5 cut(s) 223, 645, 659, 1022, 1244
Mly113I GGCGCC 1 cut(s) 253
MlyI GAGTC 5 cut(s) 215, 317, 751, 1024, 1162
MmeI TCCRAC 2 cut(s) 744, 884
MnlI CCTC 7 cut(s) 119, 226, 229, 490, 556, 983, 1053
MseI TTAA 9 cut(s) 74, 288, 417, 443, 648, 734, 789, 963, 1306
MslI CAYNNNNRTG 2 cut(s) 497, 956
MspA1I CMGCKG 1 cut(s) 1013
MspI CCGG 2 cut(s) 339, 681
MspR9I CCNGG 3 cut(s) 315, 681, 682
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 6 cut(s) 62, 149, 155, 259, 1079, 1187
NarI GGCGCC 1 cut(s) 253
NciI CCSGG 2 cut(s) 681, 682
NdeII GATC 5 cut(s) 20, 113, 196, 472, 826
NheI GCTAGC 1 cut(s) 548
NlaIV GGNNCC 2 cut(s) 22, 254
NmuCI GTSAC 1 cut(s) 728
NspI RCATGY 2 cut(s) 502, 955
PaeI GCATGC 1 cut(s) 955
PagI TCATGA 2 cut(s) 559, 600
PciI ACATGT 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 1135
PfeI GAWTC 4 cut(s) 526, 597, 802, 1037
PflFI GACNNNGTC 1 cut(s) 814
PflMI CCANNNNNTGG 3 cut(s) 320, 513, 866
PkrI GCNGC 5 cut(s) 52, 55, 88, 151, 1081
PleI GAGTC 5 cut(s) 214, 316, 751, 1024, 1162
PluTI GGCGCC 1 cut(s) 256
PpsI GAGTC 5 cut(s) 214, 316, 751, 1024, 1162
PscI ACATGT 1 cut(s) 498
PshBI ATTAAT 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 22, 254
PspPI GGNCC 1 cut(s) 238
PstNI CAGNNNCTG 2 cut(s) 529, 824
PsuI RGATCY 3 cut(s) 20, 113, 472
PsyI GACNNNGTC 1 cut(s) 814
PvuII CAGCTG 1 cut(s) 1013
RseI CAYNNNNRTG 2 cut(s) 497, 956
SapI GCTCTTC 1 cut(s) 1135
SaqAI TTAA 9 cut(s) 74, 288, 417, 443, 648, 734, 789, 963, 1306
SatI GCNGC 5 cut(s) 51, 54, 87, 150, 1080
Sau3AI GATC 5 cut(s) 20, 113, 196, 472, 826
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 5 cut(s) 215, 317, 751, 1024, 1162
ScrFI CCNGG 3 cut(s) 315, 681, 682
SfaNI GCATC 2 cut(s) 1066, 1204
SfcI CTRYAG 2 cut(s) 387, 1150
SfoI GGCGCC 1 cut(s) 254
SmaI CCCGGG 1 cut(s) 682
SmiMI CAYNNNNRTG 2 cut(s) 497, 956
SmlI CTYRAG 1 cut(s) 1090
SmoI CTYRAG 1 cut(s) 1090
SphI GCATGC 1 cut(s) 955
Sse9I AATT 5 cut(s) 223, 645, 659, 1022, 1244
SsiI CCGC 2 cut(s) 149, 1080
SspDI GGCGCC 1 cut(s) 252
SspI AATATT 1 cut(s) 248
SspMI CTAG 5 cut(s) 44, 549, 588, 969, 987
StyD4I CCNGG 3 cut(s) 313, 679, 680
StyI CCWWGG 2 cut(s) 512, 1232
TaaI ACNGT 4 cut(s) 362, 375, 675, 1154
TaqI TCGA 5 cut(s) 199, 218, 836, 931, 1290
TasI AATT 5 cut(s) 223, 645, 659, 1022, 1244
TauI GCSGC 2 cut(s) 152, 1082
TfiI GAWTC 4 cut(s) 526, 597, 802, 1037
Tru1I TTAA 9 cut(s) 74, 288, 417, 443, 648, 734, 789, 963, 1306
Tru9I TTAA 9 cut(s) 74, 288, 417, 443, 648, 734, 789, 963, 1306
TscAI CASTG 3 cut(s) 367, 400, 1159
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 3 cut(s) 50, 53, 86
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 7 cut(s) 111, 156, 481, 589, 617, 807, 815
TspGWI ACGGA 1 cut(s) 972
TspMI CCCGGG 1 cut(s) 680
TspRI CASTG 3 cut(s) 367, 400, 1159
Tth111I GACNNNGTC 1 cut(s) 814
Van91I CCANNNNNTGG 3 cut(s) 320, 513, 866
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 1 cut(s) 659
XbaI TCTAGA 2 cut(s) 587, 986
XceI RCATGY 2 cut(s) 502, 955
XmaI CCCGGG 1 cut(s) 680
XspI CTAG 5 cut(s) 44, 549, 588, 969, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.