No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0353501 |
| rosa_laevigata | RLG00000012063 |
| rosa_roxburghii | Rroxscaffold_4G00325960 Rroxscaffold_5G00378580 Rroxscaffold_6G00410900 |
| rosa_rugosa | Rorug06G0205700 |
| rosa_samantha | Rh4CG126400 Rh5DG131500 Rh6CG219400 Rh6DG315700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 111 |
| AfaI | GTAC | 1 cut(s) | 200 |
| AgsI | TTSAA | 4 cut(s) | 182, 218, 254, 404 |
| AluBI | AGCT | 2 cut(s) | 342, 362 |
| AluI | AGCT | 2 cut(s) | 342, 362 |
| Alw26I | GTCTC | 1 cut(s) | 100 |
| AspA2I | CCTAGG | 1 cut(s) | 322 |
| AspS9I | GGNCC | 1 cut(s) | 63 |
| AsuHPI | GGTGA | 1 cut(s) | 359 |
| AvaII | GGWCC | 1 cut(s) | 63 |
| AvrII | CCTAGG | 1 cut(s) | 322 |
| BccI | CCATC | 1 cut(s) | 125 |
| BclI | TGATCA | 1 cut(s) | 238 |
| BcoDI | GTCTC | 1 cut(s) | 100 |
| BfaI | CTAG | 4 cut(s) | 170, 323, 345, 454 |
| BfuAI | ACCTGC | 1 cut(s) | 111 |
| BlnI | CCTAGG | 1 cut(s) | 322 |
| Bme18I | GGWCC | 1 cut(s) | 63 |
| BmgT120I | GGNCC | 1 cut(s) | 63 |
| BmiI | GGNNCC | 1 cut(s) | 64 |
| BmsI | GCATC | 1 cut(s) | 107 |
| BpmI | CTGGAG | 1 cut(s) | 322 |
| BsaJI | CCNNGG | 1 cut(s) | 322 |
| Bse3DI | GCAATG | 1 cut(s) | 448 |
| BseDI | CCNNGG | 1 cut(s) | 322 |
| BseGI | GGATG | 1 cut(s) | 229 |
| BseMI | GCAATG | 1 cut(s) | 448 |
| BseRI | GAGGAG | 2 cut(s) | 302, 354 |
| BslFI | GGGAC | 1 cut(s) | 76 |
| BsmAI | GTCTC | 1 cut(s) | 100 |
| BsmFI | GGGAC | 1 cut(s) | 76 |
| Bsp1407I | TGTACA | 1 cut(s) | 198 |
| Bsp143I | GATC | 2 cut(s) | 238, 281 |
| BspLI | GGNNCC | 1 cut(s) | 64 |
| BspMI | ACCTGC | 1 cut(s) | 111 |
| BsrDI | GCAATG | 1 cut(s) | 448 |
| BsrGI | TGTACA | 1 cut(s) | 198 |
| BssECI | CCNNGG | 1 cut(s) | 322 |
| BssMI | GATC | 2 cut(s) | 238, 281 |
| BssT1I | CCWWGG | 1 cut(s) | 322 |
| Bst4CI | ACNGT | 1 cut(s) | 288 |
| BstAUI | TGTACA | 1 cut(s) | 198 |
| BstC8I | GCNNGC | 2 cut(s) | 262, 266 |
| BstF5I | GGATG | 1 cut(s) | 229 |
| BstKTI | GATC | 2 cut(s) | 241, 284 |
| BstMAI | GTCTC | 1 cut(s) | 100 |
| BstMBI | GATC | 2 cut(s) | 238, 281 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 438 |
| BstNSI | RCATGY | 1 cut(s) | 268 |
| BtsCI | GGATG | 1 cut(s) | 229 |
| BtsIMutI | CAGTG | 1 cut(s) | 284 |
| BveI | ACCTGC | 1 cut(s) | 111 |
| Cac8I | GCNNGC | 2 cut(s) | 262, 266 |
| Cfr13I | GGNCC | 1 cut(s) | 63 |
| Csp6I | GTAC | 1 cut(s) | 199 |
| CviAII | CATG | 1 cut(s) | 265 |
| CviJI | RGCY | 4 cut(s) | 342, 362, 432, 448 |
| CviKI_1 | RGCY | 4 cut(s) | 342, 362, 432, 448 |
| CviQI | GTAC | 1 cut(s) | 199 |
| DpnI | GATC | 2 cut(s) | 240, 283 |
| DpnII | GATC | 2 cut(s) | 238, 281 |
| Eco130I | CCWWGG | 1 cut(s) | 322 |
| Eco47I | GGWCC | 1 cut(s) | 63 |
| EcoT14I | CCWWGG | 1 cut(s) | 322 |
| ErhI | CCWWGG | 1 cut(s) | 322 |
| FaeI | CATG | 1 cut(s) | 268 |
| FaiI | YATR | 6 cut(s) | 30, 41, 103, 186, 266, 393 |
| FaqI | GGGAC | 1 cut(s) | 76 |
| FatI | CATG | 1 cut(s) | 264 |
| FbaI | TGATCA | 1 cut(s) | 238 |
| FokI | GGATG | 1 cut(s) | 236 |
| FspBI | CTAG | 4 cut(s) | 170, 323, 345, 454 |
| GsuI | CTGGAG | 1 cut(s) | 322 |
| Hin1II | CATG | 1 cut(s) | 268 |
| HincII | GTYRAC | 1 cut(s) | 350 |
| HindII | GTYRAC | 1 cut(s) | 350 |
| HinfI | GANTC | 1 cut(s) | 4 |
| HphI | GGTGA | 1 cut(s) | 359 |
| Hpy166II | GTNNAC | 1 cut(s) | 350 |
| Hpy188I | TCNGA | 2 cut(s) | 9, 281 |
| Hpy188III | TCNNGA | 1 cut(s) | 148 |
| Hpy8I | GTNNAC | 1 cut(s) | 350 |
| HpyCH4III | ACNGT | 1 cut(s) | 288 |
| HpyCH4V | TGCA | 4 cut(s) | 97, 120, 391, 441 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 438 |
| Hsp92II | CATG | 1 cut(s) | 268 |
| Ksp22I | TGATCA | 1 cut(s) | 238 |
| Kzo9I | GATC | 2 cut(s) | 238, 281 |
| LmnI | GCTCC | 1 cut(s) | 367 |
| LpnPI | CCDG | 6 cut(s) | 106, 153, 232, 331, 352, 434 |
| LweI | GCATC | 1 cut(s) | 107 |
| MaeI | CTAG | 4 cut(s) | 170, 323, 345, 454 |
| MaeIII | GTNAC | 1 cut(s) | 145 |
| MalI | GATC | 2 cut(s) | 240, 283 |
| MboI | GATC | 2 cut(s) | 238, 281 |
| MfeI | CAATTG | 2 cut(s) | 174, 328 |
| MluCI | AATT | 4 cut(s) | 174, 194, 304, 328 |
| MmeI | TCCRAC | 1 cut(s) | 144 |
| MnlI | CCTC | 4 cut(s) | 320, 323, 346, 375 |
| MseI | TTAA | 1 cut(s) | 374 |
| MunI | CAATTG | 2 cut(s) | 174, 328 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 438 |
| NdeII | GATC | 2 cut(s) | 238, 281 |
| NlaIII | CATG | 1 cut(s) | 268 |
| NlaIV | GGNNCC | 1 cut(s) | 64 |
| NmuCI | GTSAC | 1 cut(s) | 145 |
| NspI | RCATGY | 1 cut(s) | 268 |
| PaeI | GCATGC | 1 cut(s) | 268 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PspN4I | GGNNCC | 1 cut(s) | 64 |
| PspPI | GGNCC | 1 cut(s) | 63 |
| RsaI | GTAC | 1 cut(s) | 200 |
| RsaNI | GTAC | 1 cut(s) | 199 |
| SaqAI | TTAA | 1 cut(s) | 374 |
| Sau3AI | GATC | 2 cut(s) | 238, 281 |
| Sau96I | GGNCC | 1 cut(s) | 63 |
| SetI | ASST | 5 cut(s) | 38, 125, 142, 344, 364 |
| SfaNI | GCATC | 1 cut(s) | 107 |
| SinI | GGWCC | 1 cut(s) | 63 |
| SphI | GCATGC | 1 cut(s) | 268 |
| Sse9I | AATT | 4 cut(s) | 174, 194, 304, 328 |
| SspMI | CTAG | 4 cut(s) | 170, 323, 345, 454 |
| StyI | CCWWGG | 1 cut(s) | 322 |
| TaaI | ACNGT | 1 cut(s) | 288 |
| TaqI | TCGA | 1 cut(s) | 189 |
| TasI | AATT | 4 cut(s) | 174, 194, 304, 328 |
| TatI | WGTACW | 1 cut(s) | 198 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| Tru1I | TTAA | 1 cut(s) | 374 |
| Tru9I | TTAA | 1 cut(s) | 374 |
| TscAI | CASTG | 1 cut(s) | 291 |
| TseFI | GTSAC | 1 cut(s) | 145 |
| Tsp45I | GTSAC | 1 cut(s) | 145 |
| TspDTI | ATGAA | 2 cut(s) | 17, 207 |
| TspRI | CASTG | 1 cut(s) | 291 |
| VpaK11BI | GGWCC | 1 cut(s) | 63 |
| XceI | RCATGY | 1 cut(s) | 268 |
| XmaJI | CCTAGG | 1 cut(s) | 322 |
| XspI | CTAG | 4 cut(s) | 170, 323, 345, 454 |