Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0018382

Physical Location & Seq

Genomic Coordinates Reverse (-)

57097189 .. 57097944

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG384300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAGAAGAATCGCAAGTTCAAAACTCTCTTGGGCTACTTGCAGTGCTCGCTCAACTCCGTGAAAGAACGAATCATCCAACCTATGGAAGAAAAGCCCGAGAATTTCCCAGATGAAGGAATTGAAAGTTTGATGATACTAGTGCAGAAGGGCCTAAAGCTAATAACTGAGAAGTTCTCCAAGCTCCGACGTTGGGACCTCTATTTCTGCATGGATGATCACACCGTCGAACTTCTCGGTTTGGATAGTGTTCTCAGAGAGCTGATGGAGCAGTTTTGGGTAATGGAGTTACGTGATGTGAATGACATCAGAGGCTATATGCAATACTCGATGAGCCCCGAAGTGTACAACATGTTGAATGAAAATCTTCAGAGAATCGTAGATACTTTTGAGAAGGCATGGGAGTCGGATACCATGGCTCCGGAGGAGCCAAATCATGAAGAGGAAGAAGGAATGGAACAAGCGACGCTGTTGGTGTTTGAGACATTGTTTGAAACGGTCCATGAAGTGTTGAACAAGAAGAAGACGCCTGCGATGTTTGAATTGCTGCTTGGCGATATTTTTGACAGACTCTTATTGTTGAAACCCTTTATGGAAAAGAAGGCAAAAGCATTTGATGGCACAGACGAGGAACTAAGAAATTTCAAAGCAAAGATGGTGAAAGGTTGGAGATTGTTCGCAAGAGCTCTGGGTTTGGTATGTGGGGTGGCTACAATAAGAGAAAGTATGAGTGCATCAACAACCTGCTCGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

251

Amino Acids

29.36

Weight (kDa)

4.95

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018382)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27330
rosa_laevigata	RLG00000011723
rosa_multiflora	Rmu_sc0000486.1_g000007
rosa_roxburghii	Rroxscaffold_7G00178260
rosa_rugosa	Rorug06G0258800
rosa_samantha	Rh6AG371100 Rh6BG379000 Rh6CG384300 Rh6DG371600 Rh7CG403600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	752
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccIII	TCCGGA	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	103, 640
AcuI	CTGAAG	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	527
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	3 cut(s)	85, 116, 193
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	8 cut(s)	22, 125, 358, 494, 514, 542, 583, 646
AhlI	ACTAGT	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	534, 566
AloI	GAACNNNNNNTCC	2 cut(s)	60, 92
AluBI	AGCT	4 cut(s)	160, 184, 262, 686
AluI	AGCT	4 cut(s)	160, 184, 262, 686
Alw21I	GWGCWC	2 cut(s)	50, 688
Alw26I	GTCTC	1 cut(s)	476
Ama87I	CYCGRG	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	547
ApoI	RAATTY	2 cut(s)	103, 640
Asp700I	GAANNNNTTC	1 cut(s)	366
AspS9I	GGNCC	3 cut(s)	151, 196, 499
AsuHPI	GGTGA	1 cut(s)	670
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	2 cut(s)	196, 499
BanII	GRGCYC	2 cut(s)	338, 688
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	2 cut(s)	50, 688
BbvI	GCAGC	1 cut(s)	534
BccI	CCATC	3 cut(s)	259, 611, 649
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BciVI	GTATCC	1 cut(s)	403
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	476
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	752
BfuI	GTATCC	1 cut(s)	403
BisI	GCNGC	1 cut(s)	548
BlsI	GCNGC	1 cut(s)	549
Bme18I	GGWCC	2 cut(s)	196, 499
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	3 cut(s)	151, 196, 499
BmiI	GGNNCC	3 cut(s)	197, 420, 429
BmsI	GCATC	1 cut(s)	743
BpiI	GAAGAC	1 cut(s)	530
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
BsaAI	YACGTR	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	421
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 116, 193
BseAI	TCCGGA	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	2 cut(s)	75, 220
BseLI	CCNNNNNNNGG	3 cut(s)	85, 116, 193
BseMII	CTCAG	2 cut(s)	159, 268
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	534
BsgI	GTGCAG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	50, 688
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	3 cut(s)	85, 116, 193
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	50, 338, 688
Bsp13I	TCCGGA	1 cut(s)	421
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	414
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	2 cut(s)	160, 267
BspEI	TCCGGA	1 cut(s)	421
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	3 cut(s)	197, 420, 429
BspMI	ACCTGC	1 cut(s)	752
BsrGI	TGTACA	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	226, 499
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	527
BstAUI	TGTACA	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	50, 531
BstDEI	CTNAG	3 cut(s)	168, 254, 635
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	75, 220
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 268
BstNSI	RCATGY	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	534
BstV2I	GAAGAC	1 cut(s)	530
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	548
BtsCI	GGATG	2 cut(s)	75, 220
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	752
Cac8I	GCNNGC	2 cut(s)	50, 531
CciI	TCATGA	1 cut(s)	436
Cfr13I	GGNCC	3 cut(s)	151, 196, 499
CseI	GACGC	2 cut(s)	475, 535
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	6 cut(s)	211, 352, 399, 415, 437, 503
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	3 cut(s)	168, 254, 635
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Ecl136II	GAGCTC	1 cut(s)	686
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	2 cut(s)	338, 688
Eco47I	GGWCC	2 cut(s)	196, 499
Eco53kI	GAGCTC	1 cut(s)	686
Eco57I	CTGAAG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	686
EcoO109I	RGGNCCY	2 cut(s)	151, 196
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	2 cut(s)	338, 688
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	6 cut(s)	214, 355, 402, 418, 440, 506
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	6 cut(s)	210, 351, 398, 414, 436, 502
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	548
FokI	GGATG	2 cut(s)	62, 227
FriOI	GRGCYC	2 cut(s)	338, 688
Fsp4HI	GCNGC	1 cut(s)	548
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	1 cut(s)	548
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	1 cut(s)	422
HgaI	GACGC	2 cut(s)	475, 535
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	6 cut(s)	214, 355, 402, 418, 440, 506
HinfI	GANTC	5 cut(s)	10, 72, 375, 404, 570
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	1 cut(s)	670
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	6 cut(s)	188, 257, 311, 372, 409, 751
Hpy188III	TCNNGA	2 cut(s)	422, 437
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	3 cut(s)	192, 230, 469
HpyAV	CCTTC	5 cut(s)	110, 142, 388, 443, 595
HpyCH4III	ACNGT	2 cut(s)	226, 499
HpyCH4IV	ACGT	2 cut(s)	190, 292
HpyCH4V	TGCA	5 cut(s)	43, 145, 210, 322, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 268
HpyF3I	CTNAG	3 cut(s)	168, 254, 635
HpySE526I	ACGT	2 cut(s)	190, 292
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	6 cut(s)	214, 355, 402, 418, 440, 506
Kpn2I	TCCGGA	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	4 cut(s)	189, 268, 424, 427
LpnPI	CCDG	4 cut(s)	123, 435, 543, 674
Lsp1109I	GCAGC	1 cut(s)	534
LweI	GCATC	1 cut(s)	743
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	2 cut(s)	190, 292
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	7 cut(s)	19, 101, 359, 452, 458, 532, 535
MhlI	GDGCHC	3 cut(s)	50, 338, 688
MluCI	AATT	4 cut(s)	103, 120, 542, 640
MlyI	GAGTC	2 cut(s)	413, 564
MmeI	TCCRAC	4 cut(s)	103, 211, 387, 647
MnlI	CCTC	5 cut(s)	209, 305, 418, 436, 622
MroI	TCCGGA	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	366
MspI	CCGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	2 cut(s)	49, 268
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	6 cut(s)	214, 355, 402, 418, 440, 506
NlaIV	GGNNCC	3 cut(s)	197, 420, 429
NspI	RCATGY	1 cut(s)	355
PagI	TCATGA	1 cut(s)	436
PciI	ACATGT	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	3 cut(s)	10, 72, 375
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	549
PleI	GAGTC	2 cut(s)	412, 564
PpsI	GAGTC	2 cut(s)	412, 564
Ppu21I	YACGTR	1 cut(s)	293
PpuMI	RGGWCCY	1 cut(s)	196
PscI	ACATGT	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	688
Psp5II	RGGWCCY	1 cut(s)	196
PspN4I	GGNNCC	3 cut(s)	197, 420, 429
PspPI	GGNCC	3 cut(s)	151, 196, 499
PspPPI	RGGWCCY	1 cut(s)	196
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	688
SatI	GCNGC	1 cut(s)	548
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	3 cut(s)	151, 196, 499
SchI	GAGTC	2 cut(s)	413, 564
SduI	GDGCHC	3 cut(s)	50, 338, 688
SfaNI	GCATC	1 cut(s)	743
SinI	GGWCC	2 cut(s)	196, 499
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	4 cut(s)	103, 120, 542, 640
SspMI	CTAG	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	688
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	226, 499
TaiI	ACGT	2 cut(s)	193, 295
TaqI	TCGA	2 cut(s)	228, 329
TasI	AATT	4 cut(s)	103, 120, 542, 640
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	3 cut(s)	10, 72, 375
TscAI	CASTG	1 cut(s)	50
TseI	GCWGC	1 cut(s)	547
TspDTI	ATGAA	4 cut(s)	129, 375, 453, 519
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	50
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	2 cut(s)	196, 499
XapI	RAATTY	2 cut(s)	103, 640
XceI	RCATGY	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.