Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0018382

Physical Location & Seq

Genomic Coordinates Reverse (-)

56703482 .. 56704963

Gene Structure 1482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG371600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCGGTTGCAACAATCGGAACGGCTTCGCTTGGACCAGTCTTTCAAGAACTCTGCGATCAAGTTACCCAATCGATGGAGAAGAATAGCAAGTTCAAAACTCTCTTGGGCTACTTGCAGTGCTCGCTCAACTCCGTGAAAGAACGAATCATCCAACCTATAGAAGAAAAGCCCGAGAATTTCCCAGATGAAGGAATTGAAAGTTTGATGATACTAGTGCAGAAGGGCCTAAAGCTAATAACTGAGAAGTTCTCCAAGCTCCGACGTTGGGACCTCTATTTCTGCATGGATGATCACACCGTCGAACTTCTCCGTTTGGATAGTATTCTCAGAGAGCTGATGGAGCAGTTTTGGGTAAGGGAGTTACGTGATGTGAATGACATCAGAGGCTATATGCAATACTCGATGAGCCCCGAAGTGTACAACATGTTGAATGAAAATCTTCAGAGAATCGTAGATACTTTTGAGAAGGCATGGGAGTCGAATACCATGGCTCCGGAGGAGCCAAATCATGAAGAGGAAGAAGGAATGGAACAAGCGGCGCTGTTGGTGTTTGAGACATTGTTTGAAACGGTCCATGAAGTGTTGAACAAGAAGAAGACGCCTGTGATGTTTGAATTGCTGCTTGGCGATATTTTTGACAGACTCTTATTGTTGAAACCCTTTATGGAAAAGAAGGCAAAAGCATTTGATGGCCCAGACGAGGAACTAAGAAATTTCAAAGCAAAGATGGTGAAAGGGGTGGAGATTGTTCGCAAGAGCTCTGGGTTTGGTATGTGGGGTGGCTACAATAAGAGAAAGTATGAGTGCATCAACAACCTACTCGGACTGAATCAATCTCTTGAAAGACTATTATGTATAACGAGATGGGTGGAGGCAAGGAAGGCGAGGCATTACTTGCTTTTCCTGAAATATTTGAAAACGGCTTCCAATGAATTAAAAAGCAGTTATCTGGTGCAGAATCAAACTGAGAGAGCTGATGGCAAAGAATGCGAGGAAGGCCTAATTGAAAGCAGTGTTGTGGTGCAGTATCAAGCTAAGAGGAAGGCCTTGGCTTTTAGGATGATGGTGGAGACGGTTAATGAATTTAAATGCAGTGGTACGTGTGGACCGTGTGGTGCAGAATCAAACTCTCGGTTTGCTGATTTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

384

Amino Acids

44.49

Weight (kDa)

5.51

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 93	1.9e-06	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018382)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27330
rosa_laevigata	RLG00000011723
rosa_multiflora	Rmu_sc0000486.1_g000007
rosa_roxburghii	Rroxscaffold_7G00178260
rosa_rugosa	Rorug06G0258800
rosa_samantha	Rh6AG371100 Rh6BG379000 Rh6CG384300 Rh6DG371600 Rh7CG403600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	496
AciI	CCGC	2 cut(s)	5, 539
AcsI	RAATTY	3 cut(s)	178, 715, 1085
AcuI	CTGAAG	1 cut(s)	428
AcyI	GRCGYC	1 cut(s)	602
AfaI	GTAC	2 cut(s)	422, 1102
AfiI	CCNNNNNNNGG	4 cut(s)	76, 191, 268, 703
AflIII	ACRYGT	2 cut(s)	426, 1103
AhlI	ACTAGT	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	609, 641
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AluBI	AGCT	6 cut(s)	235, 259, 337, 762, 977, 1037
AluI	AGCT	6 cut(s)	235, 259, 337, 762, 977, 1037
Alw21I	GWGCWC	2 cut(s)	125, 764
Alw26I	GTCTC	2 cut(s)	551, 1067
Ama87I	CYCGRG	1 cut(s)	173
Aor13HI	TCCGGA	1 cut(s)	496
AoxI	GGCC	4 cut(s)	226, 694, 1000, 1047
ApeKI	GCWGC	1 cut(s)	622
ApoI	RAATTY	3 cut(s)	178, 715, 1085
Asp700I	GAANNNNTTC	2 cut(s)	25, 441
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	6 cut(s)	35, 226, 271, 574, 695, 1109
AsuHPI	GGTGA	1 cut(s)	745
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	4 cut(s)	35, 271, 574, 1109
BanII	GRGCYC	2 cut(s)	413, 764
BbsI	GAAGAC	1 cut(s)	605
Bbv12I	GWGCWC	2 cut(s)	125, 764
BbvI	GCAGC	1 cut(s)	609
BccI	CCATC	7 cut(s)	70, 334, 686, 724, 861, 974, 1060
BceAI	ACGGC	2 cut(s)	39, 939
BcgI	CGANNNNNNTGC	2 cut(s)	462, 496
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	551, 1067
BcuI	ACTAGT	1 cut(s)	214
BfaI	CTAG	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	545
BisI	GCNGC	2 cut(s)	540, 623
BlsI	GCNGC	2 cut(s)	541, 624
Bme18I	GGWCC	4 cut(s)	35, 271, 574, 1109
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	6 cut(s)	35, 226, 271, 574, 695, 1109
BmiI	GGNNCC	3 cut(s)	272, 495, 504
BmsI	GCATC	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	605
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
Bsa29I	ATCGAT	1 cut(s)	74
BsaAI	YACGTR	2 cut(s)	368, 1104
BsaHI	GRCGYC	1 cut(s)	602
BsaJI	CCNNGG	2 cut(s)	489, 1050
BsaWI	WCCGGW	1 cut(s)	496
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 191, 268, 703
Bse1I	ACTGG	1 cut(s)	38
BseAI	TCCGGA	1 cut(s)	496
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	489, 1050
BseGI	GGATG	3 cut(s)	150, 295, 1068
BseLI	CCNNNNNNNGG	4 cut(s)	76, 191, 268, 703
BseMII	CTCAG	3 cut(s)	234, 343, 960
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	1 cut(s)	609
BsgI	GTGCAG	4 cut(s)	239, 977, 1046, 1140
BshFI	GGCC	4 cut(s)	228, 696, 1002, 1049
BshVI	ATCGAT	1 cut(s)	74
BsiHKAI	GWGCWC	2 cut(s)	125, 764
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	4 cut(s)	76, 191, 268, 703
BsmAI	GTCTC	2 cut(s)	551, 1067
BsmBI	CGTCTC	1 cut(s)	1067
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	995
BsnI	GGCC	4 cut(s)	228, 696, 1002, 1049
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	3 cut(s)	125, 413, 764
Bsp13I	TCCGGA	1 cut(s)	496
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	58, 292
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	2 cut(s)	5, 539
BspANI	GGCC	4 cut(s)	228, 696, 1002, 1049
BspCNI	CTCAG	3 cut(s)	235, 342, 961
BspDI	ATCGAT	1 cut(s)	74
BspEI	TCCGGA	1 cut(s)	496
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	3 cut(s)	272, 495, 504
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	489, 1050
BssMI	GATC	2 cut(s)	58, 292
BssNI	GRCGYC	1 cut(s)	602
BssT1I	CCWWGG	2 cut(s)	489, 1050
Bst4CI	ACNGT	4 cut(s)	301, 574, 1078, 1113
Bst6I	CTCTTC	1 cut(s)	510
BstACI	GRCGYC	1 cut(s)	602
BstAPI	GCANNNNNTGC	2 cut(s)	898, 990
BstAUI	TGTACA	1 cut(s)	420
BstBAI	YACGTR	2 cut(s)	368, 1104
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	5 cut(s)	243, 329, 710, 969, 1038
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	3 cut(s)	150, 295, 1068
BstH2I	RGCGCY	1 cut(s)	545
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	2 cut(s)	61, 295
BstMAI	GTCTC	2 cut(s)	551, 1067
BstMBI	GATC	2 cut(s)	58, 292
BstMWI	GCNNNNNNNGC	6 cut(s)	124, 343, 884, 898, 990, 999
BstNSI	RCATGY	1 cut(s)	430
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	609
BstV2I	GAAGAC	1 cut(s)	605
Bsu15I	ATCGAT	1 cut(s)	74
BsuRI	GGCC	4 cut(s)	228, 696, 1002, 1049
BsuTUI	ATCGAT	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	3 cut(s)	150, 295, 1068
BtsI	GCAGTG	3 cut(s)	125, 1021, 1102
BtsIMutI	CAGTG	3 cut(s)	125, 1021, 1102
Cac8I	GCNNGC	1 cut(s)	125
CciI	TCATGA	1 cut(s)	511
CfoI	GCGC	1 cut(s)	544
Cfr13I	GGNCC	6 cut(s)	35, 226, 271, 574, 695, 1109
ClaI	ATCGAT	1 cut(s)	74
CseI	GACGC	1 cut(s)	610
Csp6I	GTAC	2 cut(s)	421, 1101
CviAII	CATG	6 cut(s)	286, 427, 474, 490, 512, 578
CviQI	GTAC	2 cut(s)	421, 1101
DdeI	CTNAG	5 cut(s)	243, 329, 710, 969, 1038
DpnI	GATC	2 cut(s)	60, 294
DpnII	GATC	2 cut(s)	58, 292
DraI	TTTAAA	1 cut(s)	1090
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	762
Eco130I	CCWWGG	2 cut(s)	489, 1050
Eco147I	AGGCCT	2 cut(s)	1002, 1049
Eco24I	GRGCYC	2 cut(s)	413, 764
Eco47I	GGWCC	4 cut(s)	35, 271, 574, 1109
Eco53kI	GAGCTC	1 cut(s)	762
Eco57I	CTGAAG	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	762
EcoO109I	RGGNCCY	2 cut(s)	226, 271
EcoT14I	CCWWGG	2 cut(s)	489, 1050
EcoT38I	GRGCYC	2 cut(s)	413, 764
ErhI	CCWWGG	2 cut(s)	489, 1050
Esp3I	CGTCTC	1 cut(s)	1067
FaeI	CATG	6 cut(s)	289, 430, 477, 493, 515, 581
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	6 cut(s)	285, 426, 473, 489, 511, 577
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	540, 623
FokI	GGATG	3 cut(s)	137, 302, 1075
FriOI	GRGCYC	2 cut(s)	413, 764
Fsp4HI	GCNGC	2 cut(s)	540, 623
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	2 cut(s)	540, 623
HaeII	RGCGCY	1 cut(s)	545
HaeIII	GGCC	4 cut(s)	228, 696, 1002, 1049
HapII	CCGG	1 cut(s)	497
HgaI	GACGC	1 cut(s)	610
HhaI	GCGC	1 cut(s)	544
Hin1I	GRCGYC	1 cut(s)	602
Hin1II	CATG	6 cut(s)	289, 430, 477, 493, 515, 581
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HinfI	GANTC	7 cut(s)	147, 450, 479, 645, 832, 961, 1124
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	2 cut(s)	421, 1109
Hpy188I	TCNGA	6 cut(s)	20, 263, 332, 386, 447, 827
Hpy188III	TCNNGA	5 cut(s)	47, 497, 512, 842, 907
Hpy8I	GTNNAC	2 cut(s)	421, 1109
Hpy99I	CGWCG	2 cut(s)	267, 305
HpyAV	CCTTC	8 cut(s)	185, 217, 463, 518, 670, 877, 992, 1039
HpyCH4III	ACNGT	4 cut(s)	301, 574, 1078, 1113
HpyCH4IV	ACGT	3 cut(s)	265, 367, 1103
HpyF10VI	GCNNNNNNNGC	6 cut(s)	124, 343, 884, 898, 990, 999
HpyF3I	CTNAG	5 cut(s)	243, 329, 710, 969, 1038
HpySE526I	ACGT	3 cut(s)	265, 367, 1103
Hsp92I	GRCGYC	1 cut(s)	602
Hsp92II	CATG	6 cut(s)	289, 430, 477, 493, 515, 581
HspAI	GCGC	1 cut(s)	542
Kpn2I	TCCGGA	1 cut(s)	496
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	58, 292
LmnI	GCTCC	4 cut(s)	264, 343, 499, 502
LpnPI	CCDG	8 cut(s)	51, 198, 510, 618, 711, 750, 920, 938
Lsp1109I	GCAGC	1 cut(s)	609
LweI	GCATC	1 cut(s)	819
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	3 cut(s)	265, 367, 1103
MaeIII	GTNAC	2 cut(s)	64, 363
MalI	GATC	2 cut(s)	60, 294
MboI	GATC	2 cut(s)	58, 292
MboII	GAAGA	7 cut(s)	94, 176, 434, 527, 533, 607, 610
MhlI	GDGCHC	3 cut(s)	125, 413, 764
MluCI	AATT	7 cut(s)	178, 195, 617, 715, 935, 1005, 1085
MlyI	GAGTC	2 cut(s)	488, 639
MmeI	TCCRAC	2 cut(s)	178, 286
MnlI	CCTC	9 cut(s)	284, 380, 493, 511, 697, 868, 882, 988, 1035
MroI	TCCGGA	1 cut(s)	496
MroXI	GAANNNNTTC	2 cut(s)	25, 441
MseI	TTAA	4 cut(s)	938, 1080, 1089, 1148
MspI	CCGG	1 cut(s)	497
Mva1269I	GAATGC	1 cut(s)	995
MwoI	GCNNNNNNNGC	6 cut(s)	124, 343, 884, 898, 990, 999
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	2 cut(s)	58, 292
NlaIII	CATG	6 cut(s)	289, 430, 477, 493, 515, 581
NlaIV	GGNNCC	3 cut(s)	272, 495, 504
NspI	RCATGY	1 cut(s)	430
PagI	TCATGA	1 cut(s)	511
PceI	AGGCCT	2 cut(s)	1002, 1049
PciI	ACATGT	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	1109
PctI	GAATGC	1 cut(s)	995
PdmI	GAANNNNTTC	2 cut(s)	25, 441
PfeI	GAWTC	5 cut(s)	147, 450, 832, 961, 1124
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	541, 624
PleI	GAGTC	2 cut(s)	487, 639
PpsI	GAGTC	2 cut(s)	487, 639
Ppu21I	YACGTR	2 cut(s)	368, 1104
PpuMI	RGGWCCY	1 cut(s)	271
PscI	ACATGT	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	764
Psp5II	RGGWCCY	1 cut(s)	271
PspN4I	GGNNCC	3 cut(s)	272, 495, 504
PspPI	GGNCC	6 cut(s)	35, 226, 271, 574, 695, 1109
PspPPI	RGGWCCY	1 cut(s)	271
RsaI	GTAC	2 cut(s)	422, 1102
RsaNI	GTAC	2 cut(s)	421, 1101
SacI	GAGCTC	1 cut(s)	764
SaqAI	TTAA	4 cut(s)	938, 1080, 1089, 1148
SatI	GCNGC	2 cut(s)	540, 623
Sau3AI	GATC	2 cut(s)	58, 292
Sau96I	GGNCC	6 cut(s)	35, 226, 271, 574, 695, 1109
SchI	GAGTC	2 cut(s)	488, 639
SduI	GDGCHC	3 cut(s)	125, 413, 764
SfaNI	GCATC	1 cut(s)	819
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	4 cut(s)	35, 271, 574, 1109
SmiI	ATTTAAAT	1 cut(s)	1090
SpeI	ACTAGT	1 cut(s)	214
Sse9I	AATT	7 cut(s)	178, 195, 617, 715, 935, 1005, 1085
SseBI	AGGCCT	2 cut(s)	1002, 1049
SsiI	CCGC	2 cut(s)	5, 539
SspI	AATATT	1 cut(s)	914
SspMI	CTAG	1 cut(s)	215
SstI	GAGCTC	1 cut(s)	764
StuI	AGGCCT	2 cut(s)	1002, 1049
StyI	CCWWGG	2 cut(s)	489, 1050
SwaI	ATTTAAAT	1 cut(s)	1090
TaaI	ACNGT	4 cut(s)	301, 574, 1078, 1113
TaiI	ACGT	3 cut(s)	268, 370, 1106
TaqI	TCGA	4 cut(s)	74, 303, 404, 482
TasI	AATT	7 cut(s)	178, 195, 617, 715, 935, 1005, 1085
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	5 cut(s)	147, 450, 832, 961, 1124
Tru1I	TTAA	4 cut(s)	938, 1080, 1089, 1148
Tru9I	TTAA	4 cut(s)	938, 1080, 1089, 1148
TscAI	CASTG	3 cut(s)	125, 1021, 1102
TseI	GCWGC	1 cut(s)	622
TspDTI	ATGAA	6 cut(s)	204, 450, 528, 594, 948, 1098
TspGWI	ACGGA	2 cut(s)	124, 302
TspRI	CASTG	3 cut(s)	125, 1021, 1102
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	4 cut(s)	35, 271, 574, 1109
XapI	RAATTY	3 cut(s)	178, 715, 1085
XceI	RCATGY	1 cut(s)	430
XmnI	GAANNNNTTC	2 cut(s)	25, 441
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.