Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0018382

Physical Location & Seq

Genomic Coordinates Forward (+)

51750331 .. 51750792

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG403600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCGGTTGCAGCAATCGGAACGGCTTCGCTTGGACCAATCTTTCAAGAACTCTGTGATCAAGTTACCCAATCGATGGAGAAGAATCGCAAGTTCAAAACTCTCTTGGGCTACTTGCAGTGCTCGCTCAACTCCGTGAAAGAACGAATCATCCAACCTATAGAAGAAAAGCCCGAGAATTTCCCAGATGAAGGAATTGAAAGATTGATGATACTAGTGCAGAAGGGCCTAAAGCTAATAACTGAGAAGTTCTCCAAGGTCCGACGTTGGGACCTCTATTTCTGCATGGATGATCACACCGTCGAACTTCTCGGTTTGGATAGTGTTCTCAGAGAGCTGATGGAGCAGTTTTGGGTAATGGAGTTACGTGATGTGAATGACATCAGAGGCTATATGCAATACTCGATGAGCCCCGAAGTGTACAACATGTTGAATGGAACAAGCGACACTGTTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

153

Amino Acids

17.69

Weight (kDa)

4.87

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 93	2.3e-07	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018382)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27330
rosa_laevigata	RLG00000011723
rosa_multiflora	Rmu_sc0000486.1_g000007
rosa_roxburghii	Rroxscaffold_7G00178260
rosa_rugosa	Rorug06G0258800
rosa_samantha	Rh6AG371100 Rh6BG379000 Rh6CG384300 Rh6DG371600 Rh7CG403600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	76
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	3 cut(s)	76, 191, 268
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	4 cut(s)	47, 97, 200, 433
AhlI	ACTAGT	1 cut(s)	214
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AluBI	AGCT	2 cut(s)	235, 337
AluI	AGCT	2 cut(s)	235, 337
Alw21I	GWGCWC	1 cut(s)	125
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	178
Asp700I	GAANNNNTTC	1 cut(s)	25
AspS9I	GGNCC	4 cut(s)	35, 226, 259, 271
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	3 cut(s)	35, 259, 271
BanII	GRGCYC	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	70, 334
BceAI	ACGGC	1 cut(s)	39
BclI	TGATCA	2 cut(s)	58, 292
BcuI	ACTAGT	1 cut(s)	214
BfaI	CTAG	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme18I	GGWCC	3 cut(s)	35, 259, 271
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	4 cut(s)	35, 226, 259, 271
BmiI	GGNNCC	1 cut(s)	272
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
Bsa29I	ATCGAT	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 191, 268
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	150, 295
BseLI	CCNNNNNNNGG	3 cut(s)	76, 191, 268
BseMII	CTCAG	2 cut(s)	234, 343
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	228
BshVI	ATCGAT	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	3 cut(s)	76, 191, 268
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	228
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	125, 413
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	58, 292
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	2 cut(s)	235, 342
BspDI	ATCGAT	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	272
BsrGI	TGTACA	1 cut(s)	420
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	2 cut(s)	58, 292
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	301, 451
BstAUI	TGTACA	1 cut(s)	420
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	243, 329
BstF5I	GGATG	2 cut(s)	150, 295
BstKTI	GATC	2 cut(s)	61, 295
BstMBI	GATC	2 cut(s)	58, 292
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 124, 343
BstNSI	RCATGY	1 cut(s)	430
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	23
Bsu15I	ATCGAT	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	228
BsuTUI	ATCGAT	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	150, 295
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	125, 447
Cac8I	GCNNGC	1 cut(s)	125
Cfr13I	GGNCC	4 cut(s)	35, 226, 259, 271
ClaI	ATCGAT	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	2 cut(s)	286, 427
CviJI	RGCY	8 cut(s)	26, 111, 172, 228, 235, 337, 390, 411
CviKI_1	RGCY	8 cut(s)	26, 111, 172, 228, 235, 337, 390, 411
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	2 cut(s)	243, 329
DpnI	GATC	2 cut(s)	60, 294
DpnII	GATC	2 cut(s)	58, 292
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	413
Eco47I	GGWCC	3 cut(s)	35, 259, 271
Eco88I	CYCGRG	1 cut(s)	173
EcoO109I	RGGNCCY	2 cut(s)	226, 271
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	2 cut(s)	289, 430
FaiI	YATR	5 cut(s)	161, 287, 393, 395, 428
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	285, 426
FbaI	TGATCA	2 cut(s)	58, 292
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	2 cut(s)	137, 302
FriOI	GRGCYC	1 cut(s)	413
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	289, 430
HinfI	GANTC	2 cut(s)	85, 147
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	4 cut(s)	20, 263, 332, 386
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	2 cut(s)	267, 305
HpyAV	CCTTC	2 cut(s)	185, 217
HpyCH4III	ACNGT	2 cut(s)	301, 451
HpyCH4IV	ACGT	2 cut(s)	265, 367
HpyCH4V	TGCA	5 cut(s)	11, 118, 220, 285, 397
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 124, 343
HpyF3I	CTNAG	2 cut(s)	243, 329
HpySE526I	ACGT	2 cut(s)	265, 367
Hsp92II	CATG	2 cut(s)	289, 430
Ksp22I	TGATCA	2 cut(s)	58, 292
Kzo9I	GATC	2 cut(s)	58, 292
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	1 cut(s)	198
Lsp1109I	GCAGC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	2 cut(s)	265, 367
MaeIII	GTNAC	2 cut(s)	64, 363
MalI	GATC	2 cut(s)	60, 294
MboI	GATC	2 cut(s)	58, 292
MboII	GAAGA	2 cut(s)	94, 176
MhlI	GDGCHC	2 cut(s)	125, 413
MluCI	AATT	2 cut(s)	178, 195
MmeI	TCCRAC	2 cut(s)	178, 286
MnlI	CCTC	2 cut(s)	284, 380
MroXI	GAANNNNTTC	1 cut(s)	25
MwoI	GCNNNNNNNGC	3 cut(s)	11, 124, 343
NdeII	GATC	2 cut(s)	58, 292
NlaIII	CATG	2 cut(s)	289, 430
NlaIV	GGNNCC	1 cut(s)	272
NspI	RCATGY	1 cut(s)	430
PciI	ACATGT	1 cut(s)	426
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	85, 147
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	368
PpuMI	RGGWCCY	1 cut(s)	271
PscI	ACATGT	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	4 cut(s)	35, 226, 259, 271
PspPPI	RGGWCCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	58, 292
Sau96I	GGNCC	4 cut(s)	35, 226, 259, 271
SduI	GDGCHC	2 cut(s)	125, 413
SetI	ASST	7 cut(s)	160, 237, 261, 268, 276, 339, 370
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	3 cut(s)	35, 259, 271
SpeI	ACTAGT	1 cut(s)	214
Sse9I	AATT	2 cut(s)	178, 195
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	301, 451
TaiI	ACGT	2 cut(s)	268, 370
TaqI	TCGA	3 cut(s)	74, 303, 404
TasI	AATT	2 cut(s)	178, 195
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	2 cut(s)	85, 147
TscAI	CASTG	2 cut(s)	125, 454
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	204
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	2 cut(s)	125, 454
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	3 cut(s)	35, 259, 271
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	25
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.