Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004709

Physical Location & Seq

Genomic Coordinates Forward (+)

65839951 .. 65843515

Gene Structure 3565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG502900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGAAGAGAGCTTTCAGAAATTGATGGGGATGGAGTTTTTGATTACCAATGTTTCTCTGGTCTCGACCGTTTTCACAGTGCTGGCAATATTGGCTGGAGTTTTGGGCTACTTGTATGCACCATACTGGGGAGTGAGAAGGGTTCCTGGCCCACGAACTATCCCTTTTCTAGGACACCTTCCCTTGCTGGCTAAGCATGGTCCTGATGTGTTCTCAGTTCTTGCCAAACAATATGGCCCTATCTTCAGGTTTCATATGGGTAGACAGCCACTTATAATTGTAGCAGATGCGGAGCTTTGTAGAGAAGTTGGAATCAAGAAATTCAAAGACATCCCAAACAGAAGCATACCATCTCCAATCTCAGGCTCCCCTCTTCACCAAAAGGGTCTCTTTTTCACCAGGGACACAAGATGGTCAACTATGAGAAACACCATATTATCAGTGTATCAACCTTCATACCTAGCTAGCCTTGTTCCCACCATGCAATCATTTATTGAATCTGCAACTCAAAACCTTGATGACTCTTCCAAAAAGGAAGACATTACCTTTTCAAACCTCTCACTCAGATTGGCCACTGACGTAATTGGACAAGCTGCCTTTGGTGTCAACTTTGGCCTTTCAAAATCACAGTCCATTAGTGATTCAATCAACAAGATTGATAATGGCCAAGACAAGAATGATGATGAAGTCTCGGACTTTATCAACCAACACATCTATTCCACTACTCAGCTGAAGATGGACTTGTCAGGTTCCGTATCAATCATATTGGGCCTACTCGTCCCCATATTGCAAGAGCCATTTAGGCAAATCTTGAAGAGAATTCCGGGCACTATGGACTGGAAAGTAGACCGGACTAACCAGAATTTGTCTAGCCGGCTTGATGGGATTGTAATGAAGAGAATGAAAGATAGTGAGCGAGGTTCGAAAAATTTCTTGTCGCTCATAATGAATGCAAGGGAGTCAGAAGGGGTAGCAAAGAGTGTGTTCACTCCAGATTACATTAGCGCAGTCACTTATGAGCATTTGCTTGCTGGGTCAGCCACCACATCTTTTACCTTGTCCTCAGCTGTCTACTTGATTTCTGGACACCCGGAAGTCGAAAGCAAGTTGCTAGCCGAAATCGACGGATTTGGTCCACATGATCAGATCCCAACAGCTCATGATCTTCAGCACAAATTCCCTTATCTTGAACAGGTTATTAAAGAGGCAATGAGGTTTTACATAGTTTCTCCTTTAGTTGCAAGAGAAACGTCAAGAGAAGTAGAAGTAGGAGGTTATCTTCTACCAAAGGTACTGCTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0006629 GO:0006720 GO:0006721 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009914 GO:0009926 GO:0009934 GO:0009962 GO:0009963 GO:0009987 GO:0010016 GO:0010223 GO:0010346 GO:0010817 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0019222 GO:0022603 GO:0032501 GO:0032502 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0048367 GO:0048509 GO:0048518 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901576 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

434

Amino Acids

48.4

Weight (kDa)

7.17

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	49 - 430	1.1e-52	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26170 AT2G26170
fragaria_vesca	FvH4_2g31660 FvH4_2g31680 FvH4_2g31680 FvH4_2g31680 FvH4_2g31680 FvH4_2g31680
malus_domestica	MD02G1142400.v1.1 MD08G1064200.v1.1 MD15G1057500.v1.1 MD15G1057600.v1.1
prunus_persica	Prupe.1G410100_v2.0.a1 Prupe.1G410100_v2.0.a1 Prupe.1G410300_v2.0.a1 Prupe.1G410300_v2.0.a1 Prupe.1G410300_v2.0.a1
pyrus_communis	pycom08g05270 pycom15g05410 pycom15g05420 pycom15g22400
rosa_chinensis	RchiOBHm_Chr6g0311161
rosa_laevigata	RLG00000010431
rosa_multiflora	Rmu_sc0008967.1_g000014 Rmu_sc0016962.1_g000003
rosa_roxburghii	Rroxscaffold_7G00157950
rosa_rugosa	Rorug06G0386000
rosa_samantha	Rh6BG510700 Rh6CG516400 Rh6DG502900
rosa_wichuraiana	Rw6G043550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AccI	GTMKAC	3 cut(s)	262, 846, 1071
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	1 cut(s)	1141
AcoI	YGGCCR	2 cut(s)	570, 664
AcsI	RAATTY	5 cut(s)	320, 819, 862, 928, 1175
AcuI	CTGAAG	3 cut(s)	229, 752, 1151
AfaI	GTAC	1 cut(s)	1293
AfiI	CCNNNNNNNGG	3 cut(s)	128, 170, 362
AgsI	TTSAA	7 cut(s)	325, 497, 552, 621, 645, 814, 1190
AjnI	CCWGG	2 cut(s)	145, 398
AluBI	AGCT	7 cut(s)	12, 295, 464, 593, 730, 1067, 1157
AluI	AGCT	7 cut(s)	12, 295, 464, 593, 730, 1067, 1157
Alw26I	GTCTC	3 cut(s)	67, 392, 694
AlwI	GGATC	1 cut(s)	1141
AoxI	GGCC	6 cut(s)	148, 235, 570, 613, 664, 769
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	5 cut(s)	320, 819, 862, 928, 1175
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
Asp700I	GAANNNNTTC	1 cut(s)	929
AspLEI	GCGC	1 cut(s)	1007
AspS9I	GGNCC	5 cut(s)	149, 200, 236, 769, 1133
AsuC2I	CCSGG	2 cut(s)	825, 1091
AsuHPI	GGTGA	2 cut(s)	368, 388
AsuII	TTCGAA	1 cut(s)	923
AsuNHI	GCTAGC	2 cut(s)	464, 1111
AvaII	GGWCC	2 cut(s)	200, 1133
BaeGI	GKGCMC	1 cut(s)	830
BaeI	ACNNNNGTAYC	1 cut(s)	1283
BalI	TGGCCA	2 cut(s)	572, 666
BbsI	GAAGAC	1 cut(s)	543
BbvCI	CCTCAGC	1 cut(s)	1063
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	6 cut(s)	19, 25, 358, 405, 730, 875
BciT130I	CCWGG	2 cut(s)	147, 400
BclI	TGATCA	1 cut(s)	1141
BcnI	CCSGG	2 cut(s)	825, 1091
BcoDI	GTCTC	3 cut(s)	67, 392, 694
BfaI	CTAG	5 cut(s)	170, 461, 465, 870, 1112
BglI	GCCNNNNNGGC	1 cut(s)	802
BisI	GCNGC	1 cut(s)	594
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	595
Bme1390I	CCNGG	4 cut(s)	147, 400, 825, 1091
Bme18I	GGWCC	2 cut(s)	200, 1133
BmgT120I	GGNCC	5 cut(s)	149, 200, 236, 769, 1133
BmiI	GGNNCC	3 cut(s)	144, 367, 751
BmrFI	CCNGG	4 cut(s)	147, 400, 825, 1091
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	277
BmtI	GCTAGC	2 cut(s)	468, 1115
BmuI	ACTGGG	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	543
BpmI	CTGGAG	2 cut(s)	117, 975
Bpu10I	CCTNAGC	1 cut(s)	1063
Bpu1102I	GCTNAGC	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	923
BpuMI	CCSGG	2 cut(s)	825, 1091
BsaI	GGTCTC	2 cut(s)	67, 392
BsaJI	CCNNGG	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	849
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 170, 362
Bse118I	RCCGGY	1 cut(s)	873
Bse1I	ACTGG	2 cut(s)	131, 842
Bse3DI	GCAATG	1 cut(s)	1215
BseBI	CCWGG	2 cut(s)	147, 400
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	2 cut(s)	36, 330
BseLI	CCNNNNNNNGG	3 cut(s)	128, 170, 362
BseMI	GCAATG	1 cut(s)	1215
BseMII	CTCAG	5 cut(s)	228, 375, 577, 740, 1077
BseNI	ACTGG	2 cut(s)	131, 842
BseSI	GKGCMC	1 cut(s)	830
BseXI	GCAGC	1 cut(s)	580
BseYI	CCCAGC	1 cut(s)	1031
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	6 cut(s)	150, 237, 572, 615, 666, 771
BsiEI	CGRYCG	1 cut(s)	69
BsiSI	CCGG	4 cut(s)	824, 850, 874, 1091
BslFI	GGGAC	2 cut(s)	416, 764
BslI	CCNNNNNNNGG	3 cut(s)	128, 170, 362
BsmAI	GTCTC	3 cut(s)	67, 392, 694
BsmFI	GGGAC	2 cut(s)	416, 764
BsmI	GAATGC	1 cut(s)	955
BsnI	GGCC	6 cut(s)	150, 237, 572, 615, 666, 771
Bso31I	GGTCTC	2 cut(s)	67, 392
Bsp119I	TTCGAA	1 cut(s)	923
Bsp1286I	GDGCHC	1 cut(s)	830
Bsp143I	GATC	3 cut(s)	1141, 1146, 1162
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	6 cut(s)	150, 237, 572, 615, 666, 771
BspCNI	CTCAG	5 cut(s)	227, 374, 576, 739, 1076
BspHI	TCATGA	1 cut(s)	1159
BspLI	GGNNCC	3 cut(s)	144, 367, 751
BspOI	GCTAGC	2 cut(s)	468, 1115
BspPI	GGATC	1 cut(s)	1141
BspT104I	TTCGAA	1 cut(s)	923
BspTNI	GGTCTC	2 cut(s)	67, 392
BsrDI	GCAATG	1 cut(s)	1215
BsrFI	RCCGGY	1 cut(s)	873
BsrI	ACTGG	2 cut(s)	131, 842
BssAI	RCCGGY	1 cut(s)	873
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	3 cut(s)	1141, 1146, 1162
Bst2UI	CCWGG	2 cut(s)	147, 400
Bst4CI	ACNGT	3 cut(s)	70, 79, 630
Bst6I	CTCTTC	4 cut(s)	378, 529, 809, 890
BstBI	TTCGAA	1 cut(s)	923
BstC8I	GCNNGC	6 cut(s)	84, 189, 466, 875, 1029, 1113
BstDEI	CTNAG	6 cut(s)	192, 214, 361, 563, 726, 1063
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	36, 330
BstHHI	GCGC	1 cut(s)	1007
BstKTI	GATC	3 cut(s)	1144, 1149, 1165
BstMAI	GTCTC	3 cut(s)	67, 392, 694
BstMBI	GATC	3 cut(s)	1141, 1146, 1162
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 193, 802, 1037
BstNI	CCWGG	2 cut(s)	147, 400
BstSCI	CCNGG	4 cut(s)	145, 398, 823, 1089
BstSLI	GKGCMC	1 cut(s)	830
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	1146
BstYI	RGATCY	1 cut(s)	1146
BsuRI	GGCC	6 cut(s)	150, 237, 572, 615, 666, 771
BtsCI	GGATG	2 cut(s)	36, 330
BtsIMutI	CAGTG	3 cut(s)	84, 447, 573
Cac8I	GCNNGC	6 cut(s)	84, 189, 466, 875, 1029, 1113
CciI	TCATGA	1 cut(s)	1159
CfoI	GCGC	1 cut(s)	1007
Cfr10I	RCCGGY	1 cut(s)	873
Cfr13I	GGNCC	5 cut(s)	149, 200, 236, 769, 1133
Csp6I	GTAC	1 cut(s)	1292
CviAII	CATG	4 cut(s)	197, 481, 1139, 1160
CviQI	GTAC	1 cut(s)	1292
DdeI	CTNAG	6 cut(s)	192, 214, 361, 563, 726, 1063
DpnI	GATC	3 cut(s)	1143, 1148, 1164
DpnII	GATC	3 cut(s)	1141, 1146, 1162
EaeI	YGGCCR	2 cut(s)	570, 664
Eam1104I	CTCTTC	4 cut(s)	378, 529, 809, 890
EarI	CTCTTC	4 cut(s)	378, 529, 809, 890
Eco31I	GGTCTC	2 cut(s)	67, 392
Eco47I	GGWCC	2 cut(s)	200, 1133
Eco57I	CTGAAG	3 cut(s)	229, 752, 1151
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	819
EcoRII	CCWGG	2 cut(s)	145, 398
FaeI	CATG	4 cut(s)	200, 484, 1142, 1163
FalI	AAGNNNNNCTT	4 cut(s)	374, 406, 725, 757
FaqI	GGGAC	2 cut(s)	416, 764
FatI	CATG	4 cut(s)	196, 480, 1138, 1159
FauNDI	CATATG	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	1141
FblI	GTMKAC	3 cut(s)	262, 846, 1071
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	2 cut(s)	43, 317
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	5 cut(s)	170, 461, 465, 870, 1112
GlaI	GCGC	1 cut(s)	1006
GluI	GCNGC	1 cut(s)	594
GsaI	CCCAGC	1 cut(s)	1035
GsuI	CTGGAG	2 cut(s)	117, 975
HaeIII	GGCC	6 cut(s)	150, 237, 572, 615, 666, 771
HapII	CCGG	4 cut(s)	824, 850, 874, 1091
HhaI	GCGC	1 cut(s)	1007
Hin1II	CATG	4 cut(s)	200, 484, 1142, 1163
Hin6I	GCGC	1 cut(s)	1005
HinP1I	GCGC	1 cut(s)	1005
HincII	GTYRAC	2 cut(s)	417, 607
HindII	GTYRAC	2 cut(s)	417, 607
HinfI	GANTC	5 cut(s)	312, 497, 521, 641, 959
HpaII	CCGG	4 cut(s)	824, 850, 874, 1091
HphI	GGTGA	2 cut(s)	368, 388
Hpy166II	GTNNAC	7 cut(s)	263, 417, 607, 847, 987, 1072, 1136
Hpy188I	TCNGA	5 cut(s)	18, 566, 694, 964, 1146
Hpy188III	TCNNGA	9 cut(s)	64, 203, 316, 811, 992, 1083, 1160, 1187, 1254
Hpy8I	GTNNAC	7 cut(s)	263, 417, 607, 847, 987, 1072, 1136
Hpy99I	CGWCG	1 cut(s)	1127
HpyAV	CCTTC	4 cut(s)	132, 188, 462, 959
HpyCH4III	ACNGT	3 cut(s)	70, 79, 630
HpyCH4IV	ACGT	2 cut(s)	579, 1250
HpyCH4V	TGCA	6 cut(s)	119, 484, 503, 790, 953, 1241
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 193, 802, 1037
HpyF3I	CTNAG	6 cut(s)	192, 214, 361, 563, 726, 1063
HpySE526I	ACGT	2 cut(s)	579, 1250
Hsp92II	CATG	4 cut(s)	200, 484, 1142, 1163
HspAI	GCGC	1 cut(s)	1005
KroI	GCCGGC	1 cut(s)	873
KroNI	GCCGGC	1 cut(s)	875
Ksp22I	TGATCA	1 cut(s)	1141
Kzo9I	GATC	3 cut(s)	1141, 1146, 1162
LmnI	GCTCC	2 cut(s)	292, 371
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	5 cut(s)	170, 461, 465, 870, 1112
MaeII	ACGT	2 cut(s)	579, 1250
MaeIII	GTNAC	1 cut(s)	1009
MalI	GATC	3 cut(s)	1143, 1148, 1164
MboI	GATC	3 cut(s)	1141, 1146, 1162
MflI	RGATCY	1 cut(s)	1146
MhlI	GDGCHC	1 cut(s)	830
MlsI	TGGCCA	2 cut(s)	572, 666
MluCI	AATT	8 cut(s)	20, 276, 320, 582, 819, 862, 928, 1175
MluNI	TGGCCA	2 cut(s)	572, 666
MlyI	GAGTC	2 cut(s)	515, 968
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	7 cut(s)	381, 566, 911, 1072, 1198, 1206, 1265
Mox20I	TGGCCA	2 cut(s)	572, 666
MroNI	GCCGGC	1 cut(s)	873
MroXI	GAANNNNTTC	1 cut(s)	929
MscI	TGGCCA	2 cut(s)	572, 666
MseI	TTAA	1 cut(s)	1200
Msp20I	TGGCCA	2 cut(s)	572, 666
MspA1I	CMGCKG	2 cut(s)	730, 1067
MspI	CCGG	4 cut(s)	824, 850, 874, 1091
MspR9I	CCNGG	4 cut(s)	147, 400, 825, 1091
Mva1269I	GAATGC	1 cut(s)	955
MvaI	CCWGG	2 cut(s)	147, 400
MwoI	GCNNNNNNNGC	4 cut(s)	92, 193, 802, 1037
NaeI	GCCGGC	1 cut(s)	875
NciI	CCSGG	2 cut(s)	825, 1091
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	3 cut(s)	1141, 1146, 1162
NgoMIV	GCCGGC	1 cut(s)	873
NheI	GCTAGC	2 cut(s)	464, 1111
NlaIII	CATG	4 cut(s)	200, 484, 1142, 1163
NlaIV	GGNNCC	3 cut(s)	144, 367, 751
NmuCI	GTSAC	1 cut(s)	1009
NspV	TTCGAA	1 cut(s)	923
PagI	TCATGA	1 cut(s)	1159
PctI	GAATGC	1 cut(s)	955
PdiI	GCCGGC	1 cut(s)	875
PdmI	GAANNNNTTC	1 cut(s)	929
PfeI	GAWTC	3 cut(s)	312, 497, 641
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	2 cut(s)	515, 967
PpsI	GAGTC	2 cut(s)	515, 967
PsiI	TTATAA	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	145, 398
PspFI	CCCAGC	1 cut(s)	1031
PspGI	CCWGG	2 cut(s)	145, 398
PspN4I	GGNNCC	3 cut(s)	144, 367, 751
PspPI	GGNCC	5 cut(s)	149, 200, 236, 769, 1133
PsuI	RGATCY	1 cut(s)	1146
PvuII	CAGCTG	2 cut(s)	730, 1067
RsaI	GTAC	1 cut(s)	1293
RsaNI	GTAC	1 cut(s)	1292
SaqAI	TTAA	1 cut(s)	1200
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	3 cut(s)	1141, 1146, 1162
Sau96I	GGNCC	5 cut(s)	149, 200, 236, 769, 1133
SchI	GAGTC	2 cut(s)	515, 968
ScrFI	CCNGG	4 cut(s)	147, 400, 825, 1091
SduI	GDGCHC	1 cut(s)	830
SfaNI	GCATC	1 cut(s)	277
SfuI	TTCGAA	1 cut(s)	923
SinI	GGWCC	2 cut(s)	200, 1133
Sse9I	AATT	8 cut(s)	20, 276, 320, 582, 819, 862, 928, 1175
SsiI	CCGC	1 cut(s)	290
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	5 cut(s)	170, 461, 465, 870, 1112
StyD4I	CCNGG	4 cut(s)	145, 398, 823, 1089
TaaI	ACNGT	3 cut(s)	70, 79, 630
TaiI	ACGT	2 cut(s)	582, 1253
TaqI	TCGA	4 cut(s)	65, 923, 1098, 1122
TasI	AATT	8 cut(s)	20, 276, 320, 582, 819, 862, 928, 1175
TfiI	GAWTC	3 cut(s)	312, 497, 641
Tru1I	TTAA	1 cut(s)	1200
Tru9I	TTAA	1 cut(s)	1200
TscAI	CASTG	3 cut(s)	84, 447, 580
TseFI	GTSAC	1 cut(s)	1009
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	1 cut(s)	1009
TspDTI	ATGAA	6 cut(s)	242, 444, 699, 908, 917, 962
TspGWI	ACGGA	2 cut(s)	742, 1140
TspRI	CASTG	3 cut(s)	84, 447, 580
VpaK11BI	GGWCC	2 cut(s)	200, 1133
XagI	CCTNNNNNAGG	1 cut(s)	168
XapI	RAATTY	5 cut(s)	320, 819, 862, 928, 1175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XmiI	GTMKAC	3 cut(s)	262, 846, 1071
XmnI	GAANNNNTTC	1 cut(s)	929
XspI	CTAG	5 cut(s)	170, 461, 465, 870, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.