Rh7AG399700
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019714
Physical Location & Seq
Forward (+)
52559504 .. 52568830
9327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG399700.1

Sequence Viewer

Length: 729 bp
ATGCTACCAGAATTTTCAGATGAATTCTCACTGGTTAGCCTAGGTATTTGGGCTTGCCGCAAGCTCATTAACTTTCCAGGCTTGGTTGACTGGGTACAGGCTTTGGCAGAAATTGCAATCGAGGGCAACTTTAACAATATCTCTTTTCCTCTTAAGAAGGCCATCCTAGAGGAATGGAGACCGATTTCAGGTGACGGCATTTCTTTTCCTGGAAATAAGATTCCTTCGTGGTGTTCTCCTCATGTCGGTTATGGAGGTCGCCCAGTCAAATTTGAAATGCCATTTCGAAGGGATATAGCGTTTTGTGTGTGCTTTGTTTATTCTCGCTCTTTAGGCGAGTTTGACTATGATGAGTCTAGGATTGGGTTTGTGGTTGTAAATCATACCAGGCGCAGAGGTAAACCTAGATATCAATCCGTCTGCGTCAGTGACAGTGTTGTTGATGATACTGATGACAACGTTGACAATGATACTGATGACAGTGTTGATGAGGCAGGAGCAAGCTGCATCCCATTTGATGTTGATAATGGAACTATTACTTGGATCAAGAAACTTCCACCAGCCAAGAAGGGAATTGAAAATGTCAGTAACATAAAGGATGGTTATAATCCTGCAACTTGGATGTTGGAAGTCACCAGTTCGGCGAAAGAAATAGCTTATGGTGTTGATTTTGCTGGTGTTTATAAAAAATCAGAGCTATACAGGAGAAACAAAACACATGCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

242

Amino Acids

27.15

Weight (kDa)

5.13

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g32051
rosa_roxburghii Rroxscaffold_3G00231500 Rroxscaffold_3G00231510
rosa_samantha Rh7AG399700 Rh7CG417900 Rh7DG395700 Rh7DG395800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 606, 684
AciI CCGC 1 cut(s) 58
AclI AACGTT 1 cut(s) 459
AclWI GGATC 1 cut(s) 551
AcsI RAATTY 3 cut(s) 11, 23, 269
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 2 cut(s) 188, 245
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 2 cut(s) 275, 578
AjnI CCWGG 3 cut(s) 76, 208, 386
AjuI GAANNNNNNNTTGG 2 cut(s) 523, 555
AluBI AGCT 4 cut(s) 64, 504, 656, 697
AluI AGCT 4 cut(s) 64, 504, 656, 697
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 551
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 504
ApoI RAATTY 3 cut(s) 11, 23, 269
AspA2I CCTAGG 1 cut(s) 40
AspLEI GCGC 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 203, 625
AsuII TTCGAA 1 cut(s) 286
AvrII CCTAGG 1 cut(s) 40
BbvI GCAGC 1 cut(s) 491
BccI CCATC 2 cut(s) 170, 593
BceAI ACGGC 1 cut(s) 211
BciT130I CCWGG 3 cut(s) 78, 210, 388
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 4 cut(s) 41, 167, 357, 405
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 2 cut(s) 58, 505
BlnI CCTAGG 1 cut(s) 40
BlsI GCNGC 2 cut(s) 59, 506
Bme1390I CCNGG 3 cut(s) 78, 210, 388
BmrFI CCNGG 3 cut(s) 78, 210, 388
BmrI ACTGGG 2 cut(s) 100, 257
BmsI GCATC 1 cut(s) 516
BmuI ACTGGG 2 cut(s) 100, 257
Bpu14I TTCGAA 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 412
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 245
Bse1I ACTGG 4 cut(s) 36, 95, 263, 636
Bse8I GATNNNNATC 1 cut(s) 412
BseBI CCWGG 3 cut(s) 78, 210, 388
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 4 cut(s) 162, 507, 604, 627
BseJI GATNNNNATC 1 cut(s) 412
BseLI CCNNNNNNNGG 2 cut(s) 188, 245
BseNI ACTGG 4 cut(s) 36, 95, 263, 636
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 491
BshFI GGCC 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 188, 245
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 172
Bsp119I TTCGAA 1 cut(s) 286
Bsp143I GATC 1 cut(s) 543
BspACI CCGC 1 cut(s) 58
BspANI GGCC 1 cut(s) 161
BspPI GGATC 1 cut(s) 551
BspT104I TTCGAA 1 cut(s) 286
BspTI CTTAAG 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 172
BsrI ACTGG 4 cut(s) 36, 95, 263, 636
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 1 cut(s) 543
BssT1I CCWWGG 1 cut(s) 40
Bst2UI CCWGG 3 cut(s) 78, 210, 388
Bst4CI ACNGT 2 cut(s) 434, 482
BstAFI CTTAAG 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 286
BstC8I GCNNGC 3 cut(s) 55, 62, 502
BstF5I GGATG 4 cut(s) 162, 507, 604, 627
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 1 cut(s) 546
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 543
BstMWI GCNNNNNNNGC 2 cut(s) 113, 333
BstNI CCWGG 3 cut(s) 78, 210, 388
BstNSI RCATGY 1 cut(s) 722
BstSCI CCNGG 3 cut(s) 76, 208, 386
BstV1I GCAGC 1 cut(s) 491
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 4 cut(s) 162, 507, 604, 627
BtsIMutI CAGTG 4 cut(s) 29, 433, 439, 487
Cac8I GCNNGC 3 cut(s) 55, 62, 502
CfoI GCGC 1 cut(s) 393
CseI GACGC 1 cut(s) 412
Csp6I GTAC 1 cut(s) 95
CviAII CATG 2 cut(s) 242, 719
CviQI GTAC 1 cut(s) 95
DpnI GATC 1 cut(s) 545
DpnII GATC 1 cut(s) 543
Eco130I CCWWGG 1 cut(s) 40
Eco31I GGTCTC 1 cut(s) 172
Eco32I GATATC 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 23
EcoRII CCWGG 3 cut(s) 76, 208, 386
EcoRV GATATC 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 2 cut(s) 245, 722
FatI CATG 2 cut(s) 241, 718
Fnu4HI GCNGC 2 cut(s) 58, 505
FokI GGATG 4 cut(s) 149, 494, 611, 634
Fsp4HI GCNGC 2 cut(s) 58, 505
FspBI CTAG 4 cut(s) 41, 167, 357, 405
GlaI GCGC 1 cut(s) 392
GluI GCNGC 2 cut(s) 58, 505
HaeIII GGCC 1 cut(s) 161
HgaI GACGC 1 cut(s) 412
HhaI GCGC 1 cut(s) 393
Hin1II CATG 2 cut(s) 245, 722
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 2 cut(s) 88, 463
HindII GTYRAC 2 cut(s) 88, 463
HinfI GANTC 2 cut(s) 220, 353
HphI GGTGA 2 cut(s) 203, 625
Hpy166II GTNNAC 3 cut(s) 88, 401, 463
Hpy188I TCNGA 2 cut(s) 19, 694
Hpy188III TCNNGA 1 cut(s) 547
Hpy8I GTNNAC 3 cut(s) 88, 401, 463
HpyAV CCTTC 4 cut(s) 151, 234, 282, 562
HpyCH4III ACNGT 2 cut(s) 434, 482
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 3 cut(s) 116, 507, 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 333
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 2 cut(s) 245, 722
HspAI GCGC 1 cut(s) 391
Kzo9I GATC 1 cut(s) 543
LmnI GCTCC 1 cut(s) 497
Lsp1109I GCAGC 1 cut(s) 491
LweI GCATC 1 cut(s) 516
MaeI CTAG 4 cut(s) 41, 167, 357, 405
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 4 cut(s) 191, 428, 587, 631
MalI GATC 1 cut(s) 545
MboI GATC 1 cut(s) 543
MluCI AATT 5 cut(s) 11, 23, 111, 269, 573
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 606
MnlI CCTC 7 cut(s) 115, 159, 163, 248, 249, 389, 484
MseI TTAA 3 cut(s) 69, 132, 153
MspCI CTTAAG 1 cut(s) 152
MspR9I CCNGG 3 cut(s) 78, 210, 388
MvaI CCWGG 3 cut(s) 78, 210, 388
MwoI GCNNNNNNNGC 2 cut(s) 113, 333
NdeII GATC 1 cut(s) 543
NlaIII CATG 2 cut(s) 245, 722
NmuCI GTSAC 3 cut(s) 191, 428, 631
NspI RCATGY 1 cut(s) 722
NspV TTCGAA 1 cut(s) 286
PfeI GAWTC 1 cut(s) 220
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 2 cut(s) 59, 506
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
PsiI TTATAA 2 cut(s) 606, 684
Psp1406I AACGTT 1 cut(s) 459
Psp6I CCWGG 3 cut(s) 76, 208, 386
PspGI CCWGG 3 cut(s) 76, 208, 386
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SaqAI TTAA 3 cut(s) 69, 132, 153
SatI GCNGC 2 cut(s) 58, 505
Sau3AI GATC 1 cut(s) 543
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 3 cut(s) 78, 210, 388
SfaNI GCATC 1 cut(s) 516
SfuI TTCGAA 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 5 cut(s) 11, 23, 111, 269, 573
SsiI CCGC 1 cut(s) 58
SspMI CTAG 4 cut(s) 41, 167, 357, 405
StyD4I CCNGG 3 cut(s) 76, 208, 386
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 2 cut(s) 434, 482
TaiI ACGT 1 cut(s) 462
TaqI TCGA 2 cut(s) 120, 286
TaqII GACCGA 1 cut(s) 196
TasI AATT 5 cut(s) 11, 23, 111, 269, 573
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 3 cut(s) 69, 132, 153
Tru9I TTAA 3 cut(s) 69, 132, 153
TscAI CASTG 4 cut(s) 36, 433, 439, 487
TseFI GTSAC 3 cut(s) 191, 428, 631
TseI GCWGC 1 cut(s) 504
Tsp45I GTSAC 3 cut(s) 191, 428, 631
TspDTI ATGAA 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 4 cut(s) 36, 433, 439, 487
Vha464I CTTAAG 1 cut(s) 152
XapI RAATTY 3 cut(s) 11, 23, 269
XceI RCATGY 1 cut(s) 722
XmaJI CCTAGG 1 cut(s) 40
XspI CTAG 4 cut(s) 41, 167, 357, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.