Rh7DG395700

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019714
Physical Location & Seq
Forward (+)
54272567 .. 54281164
8598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG395700.1

Sequence Viewer

Length: 1047 bp
ATGATGGGTGAGTTTGTGGCCATGTTTAGGGAGAGAACCGGGTACCCCATATGTTTGTACAAATTTTGTATAATTAGGAGTTGGCAGAACTATCAATTCAAGATGCATTCGATTGATGTGTTCAACAAGGAGCCAATCATGTTATTATTAAGGCAAAATGGCTACATGAATCAACTGTGTGCCATTTTACAGGATATTCCATCCCTAACAGCTGAAGCTGCAAAGGAACATCCTGGCTTGGTTGACTGGGTACAGGCTTCGGCAGCTATTGCAATCGACGGCAACTTTAACAATATCTCTTTTCGTCTTAAGAAGGCCATCCTAGAGGAATGGAGACCGATTACAGGTACCGGCATTTCTTTTCCTGGAAATAAGATTCCTTCGTGGTGTTCTCATGTCGGTTATGGAGGTCGCCCAGTCAAATTTGAAATGCCATTTGGAAGGGATGCAGCGTTTTGTGTGTGCTTTGTTTATTCTCGCTCTCTAGGCGAGTTTGACTATGATGAGTCTAGGATTGGGTTTGTGGTTGTAAATCATACTAGGCGCACAGGTTTTTTTGCCCCCCAACAGGATTTTCAGACAACAAATTCCTCTAAAAAGTATCTTTTTTTACGCAATATGTTGCTGCAGGATGGATTAAATTTGGAAGGTGGTGACTCTATAAGCCTTCGAGTAGTACTGGGACATTATTTTAAGGTTCACCAAATAGGAGTTGAACTAATAAAGGATTATAGAGTCCTGATTTGCTGCACAGCAGCCGAAACAAAATCTATCCCATTCGGGGAGGCATTAGATCTTCTTGGTGATGATGATACTGATGACAATGTTGTTGATGATACTGATGACAACGTTGACAATGATACTGATGACAGTGTTGATGAGGCAGGAGCAAGCTACATCCCATTTGATGCTGATAATGGAACTGTTGGTGATTATGGTGAAGATGATGAGGGAGGAGGAAGACGTGATCCATTGGATGAGGATCGACCTACCAAGAGATTGAGGGGGTTTGATCTTAGTATTGGAACAACAAGGATGAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

348

Amino Acids

39.17

Weight (kDa)

4.78

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g32051
rosa_roxburghii Rroxscaffold_3G00231500 Rroxscaffold_3G00231510
rosa_samantha Rh7AG399700 Rh7CG417900 Rh7DG395700 Rh7DG395800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 42, 347
AccB1I GGYRCC 2 cut(s) 42, 347
AclI AACGTT 1 cut(s) 849
AclWI GGATC 2 cut(s) 962, 990
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 4 cut(s) 62, 422, 586, 640
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 5 cut(s) 44, 59, 252, 349, 678
AfiI CCNNNNNNNGG 4 cut(s) 27, 344, 568, 781
AflII CTTAAG 1 cut(s) 308
AgsI TTSAA 4 cut(s) 100, 124, 428, 716
AjiI CACGTC 1 cut(s) 965
AjnI CCWGG 2 cut(s) 232, 364
AjuI GAANNNNNNNTTGG 4 cut(s) 420, 452, 558, 590
AluBI AGCT 4 cut(s) 212, 218, 266, 894
AluI AGCT 4 cut(s) 212, 218, 266, 894
Alw26I GTCTC 1 cut(s) 328
AlwI GGATC 2 cut(s) 962, 990
AoxI GGCC 2 cut(s) 18, 315
ApeKI GCWGC 6 cut(s) 218, 263, 449, 625, 747, 755
ApoI RAATTY 4 cut(s) 62, 422, 586, 640
Asp718I GGTACC 2 cut(s) 42, 347
AspLEI GCGC 1 cut(s) 546
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 6 cut(s) 20, 665, 692, 815, 941, 950
BalI TGGCCA 1 cut(s) 20
BanI GGYRCC 2 cut(s) 42, 347
BbsI GAAGAC 1 cut(s) 967
BbvI GCAGC 6 cut(s) 205, 275, 461, 612, 734, 767
BccI CCATC 3 cut(s) 208, 326, 626
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 2 cut(s) 234, 366
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 328
BfaI CTAG 4 cut(s) 323, 485, 510, 540
BfmI CTRYAG 1 cut(s) 626
BfrI CTTAAG 1 cut(s) 308
BglII AGATCT 1 cut(s) 793
BisI GCNGC 6 cut(s) 219, 264, 450, 626, 748, 756
BlsI GCNGC 6 cut(s) 220, 265, 451, 627, 749, 757
BmcAI AGTACT 1 cut(s) 678
Bme1390I CCNGG 3 cut(s) 40, 234, 366
BmgBI CACGTC 1 cut(s) 965
BmiI GGNNCC 3 cut(s) 44, 132, 349
BmrFI CCNGG 3 cut(s) 40, 234, 366
BmrI ACTGGG 3 cut(s) 256, 410, 689
BmsI GCATC 3 cut(s) 93, 436, 898
BmuI ACTGGG 3 cut(s) 256, 410, 689
BpiI GAAGAC 1 cut(s) 967
BpuMI CCSGG 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 981
BsaI GGTCTC 1 cut(s) 328
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 344, 568, 781
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 3 cut(s) 251, 416, 684
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 2 cut(s) 234, 366
BseGI GGATG 8 cut(s) 200, 229, 318, 451, 637, 897, 982, 1041
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 4 cut(s) 27, 344, 568, 781
BseNI ACTGG 3 cut(s) 251, 416, 684
BseRI GAGGAG 1 cut(s) 969
BseXI GCAGC 6 cut(s) 205, 275, 461, 612, 734, 767
BsgI GTGCAG 1 cut(s) 733
BshFI GGCC 2 cut(s) 20, 317
BshNI GGYRCC 2 cut(s) 42, 347
BsiSI CCGG 2 cut(s) 39, 351
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 4 cut(s) 27, 344, 568, 781
BsmAI GTCTC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 696
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 2 cut(s) 20, 317
Bso31I GGTCTC 1 cut(s) 328
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 4 cut(s) 793, 967, 982, 1012
BspANI GGCC 2 cut(s) 20, 317
BspLI GGNNCC 3 cut(s) 44, 132, 349
BspMAI CTGCAG 1 cut(s) 630
BspPI GGATC 2 cut(s) 962, 990
BspT107I GGYRCC 2 cut(s) 42, 347
BspTI CTTAAG 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 350
BsrGI TGTACA 1 cut(s) 57
BsrI ACTGG 3 cut(s) 251, 416, 684
BssAI RCCGGY 1 cut(s) 350
BssMI GATC 4 cut(s) 793, 967, 982, 1012
Bst2UI CCWGG 2 cut(s) 234, 366
Bst4CI ACNGT 3 cut(s) 177, 872, 925
BstAFI CTTAAG 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 892
BstDEI CTNAG 1 cut(s) 1016
BstF5I GGATG 8 cut(s) 200, 229, 318, 451, 637, 897, 982, 1041
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 4 cut(s) 796, 970, 985, 1015
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 4 cut(s) 793, 967, 982, 1012
BstMWI GCNNNNNNNGC 4 cut(s) 218, 263, 269, 486
BstNI CCWGG 2 cut(s) 234, 366
BstSCI CCNGG 3 cut(s) 38, 232, 364
BstSFI CTRYAG 1 cut(s) 626
BstV1I GCAGC 6 cut(s) 205, 275, 461, 612, 734, 767
BstV2I GAAGAC 1 cut(s) 967
BstX2I RGATCY 1 cut(s) 793
BstYI RGATCY 1 cut(s) 793
BsuRI GGCC 2 cut(s) 20, 317
BtrI CACGTC 1 cut(s) 965
BtsCI GGATG 8 cut(s) 200, 229, 318, 451, 637, 897, 982, 1041
BtsIMutI CAGTG 1 cut(s) 877
Cac8I GCNNGC 1 cut(s) 892
CfoI GCGC 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 350
Csp6I GTAC 5 cut(s) 43, 58, 251, 348, 677
CviAII CATG 4 cut(s) 22, 139, 166, 395
CviQI GTAC 5 cut(s) 43, 58, 251, 348, 677
DdeI CTNAG 1 cut(s) 1016
DpnI GATC 4 cut(s) 795, 969, 984, 1014
DpnII GATC 4 cut(s) 793, 967, 982, 1012
EaeI YGGCCR 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 232, 364
EcoT22I ATGCAT 1 cut(s) 108
FaeI CATG 4 cut(s) 25, 142, 169, 398
FaqI GGGAC 1 cut(s) 696
FatI CATG 4 cut(s) 21, 138, 165, 394
FauNDI CATATG 1 cut(s) 50
Fnu4HI GCNGC 6 cut(s) 219, 264, 450, 626, 748, 756
FokI GGATG 7 cut(s) 187, 216, 305, 458, 644, 884, 989
Fsp4HI GCNGC 6 cut(s) 219, 264, 450, 626, 748, 756
FspBI CTAG 4 cut(s) 323, 485, 510, 540
GlaI GCGC 1 cut(s) 545
GluI GCNGC 6 cut(s) 219, 264, 450, 626, 748, 756
HaeIII GGCC 2 cut(s) 20, 317
HapII CCGG 2 cut(s) 39, 351
HhaI GCGC 1 cut(s) 546
Hin1II CATG 4 cut(s) 25, 142, 169, 398
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HincII GTYRAC 2 cut(s) 244, 853
HindII GTYRAC 2 cut(s) 244, 853
HinfI GANTC 5 cut(s) 169, 376, 506, 656, 735
HpaII CCGG 2 cut(s) 39, 351
HphI GGTGA 6 cut(s) 20, 665, 692, 815, 941, 950
Hpy166II GTNNAC 3 cut(s) 244, 700, 853
Hpy188I TCNGA 1 cut(s) 579
Hpy188III TCNNGA 2 cut(s) 100, 739
Hpy8I GTNNAC 3 cut(s) 244, 700, 853
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 5 cut(s) 307, 390, 435, 641, 677
HpyCH4III ACNGT 3 cut(s) 177, 872, 925
HpyCH4IV ACGT 2 cut(s) 849, 964
HpyCH4V TGCA 6 cut(s) 106, 221, 272, 449, 628, 750
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 263, 269, 486
HpyF3I CTNAG 1 cut(s) 1016
HpySE526I ACGT 2 cut(s) 849, 964
Hsp92II CATG 4 cut(s) 25, 142, 169, 398
HspAI GCGC 1 cut(s) 544
KpnI GGTACC 2 cut(s) 46, 351
Kzo9I GATC 4 cut(s) 793, 967, 982, 1012
LmnI GCTCC 2 cut(s) 130, 887
Lsp1109I GCAGC 6 cut(s) 205, 275, 461, 612, 734, 767
LweI GCATC 3 cut(s) 93, 436, 898
MaeI CTAG 4 cut(s) 323, 485, 510, 540
MaeII ACGT 2 cut(s) 849, 964
MaeIII GTNAC 1 cut(s) 653
MalI GATC 4 cut(s) 795, 969, 984, 1014
MboI GATC 4 cut(s) 793, 967, 982, 1012
MboII GAAGA 3 cut(s) 788, 953, 972
MflI RGATCY 1 cut(s) 793
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 6 cut(s) 62, 72, 95, 422, 586, 640
MluNI TGGCCA 1 cut(s) 20
MlyI GAGTC 3 cut(s) 515, 650, 744
Mox20I TGGCCA 1 cut(s) 20
Mph1103I ATGCAT 1 cut(s) 108
MscI TGGCCA 1 cut(s) 20
MseI TTAA 5 cut(s) 149, 288, 309, 638, 693
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 212
MspCI CTTAAG 1 cut(s) 308
MspI CCGG 2 cut(s) 39, 351
MspR9I CCNGG 3 cut(s) 40, 234, 366
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 2 cut(s) 234, 366
MwoI GCNNNNNNNGC 4 cut(s) 218, 263, 269, 486
NciI CCSGG 1 cut(s) 40
NdeI CATATG 1 cut(s) 50
NdeII GATC 4 cut(s) 793, 967, 982, 1012
NlaIII CATG 4 cut(s) 25, 142, 169, 398
NlaIV GGNNCC 3 cut(s) 44, 132, 349
NmuCI GTSAC 1 cut(s) 653
NsiI ATGCAT 1 cut(s) 108
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 169, 376
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 6 cut(s) 220, 265, 451, 627, 749, 757
PleI GAGTC 3 cut(s) 514, 650, 743
PpsI GAGTC 3 cut(s) 514, 650, 743
Psp1406I AACGTT 1 cut(s) 849
Psp6I CCWGG 2 cut(s) 232, 364
PspGI CCWGG 2 cut(s) 232, 364
PspN4I GGNNCC 3 cut(s) 44, 132, 349
PstI CTGCAG 1 cut(s) 630
PsuI RGATCY 1 cut(s) 793
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 5 cut(s) 44, 59, 252, 349, 678
RsaNI GTAC 5 cut(s) 43, 58, 251, 348, 677
SaqAI TTAA 5 cut(s) 149, 288, 309, 638, 693
SatI GCNGC 6 cut(s) 219, 264, 450, 626, 748, 756
Sau3AI GATC 4 cut(s) 793, 967, 982, 1012
ScaI AGTACT 1 cut(s) 678
SchI GAGTC 3 cut(s) 515, 650, 744
ScrFI CCNGG 3 cut(s) 40, 234, 366
SfaNI GCATC 3 cut(s) 93, 436, 898
SfcI CTRYAG 1 cut(s) 626
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 6 cut(s) 62, 72, 95, 422, 586, 640
SspMI CTAG 4 cut(s) 323, 485, 510, 540
StyD4I CCNGG 3 cut(s) 38, 232, 364
TaaI ACNGT 3 cut(s) 177, 872, 925
TaiI ACGT 2 cut(s) 852, 967
TaqI TCGA 4 cut(s) 110, 276, 670, 985
TaqII GACCGA 1 cut(s) 352
TasI AATT 6 cut(s) 62, 72, 95, 422, 586, 640
TatI WGTACW 2 cut(s) 57, 676
TfiI GAWTC 2 cut(s) 169, 376
Tru1I TTAA 5 cut(s) 149, 288, 309, 638, 693
Tru9I TTAA 5 cut(s) 149, 288, 309, 638, 693
TscAI CASTG 1 cut(s) 877
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 6 cut(s) 218, 263, 449, 625, 747, 755
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 1 cut(s) 877
Vha464I CTTAAG 1 cut(s) 308
XapI RAATTY 4 cut(s) 62, 422, 586, 640
XspI CTAG 4 cut(s) 323, 485, 510, 540
ZrmI AGTACT 1 cut(s) 678
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.