Rh7CG417900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019714
Physical Location & Seq
Forward (+)
53976963 .. 53995769
18807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG417900.1

Sequence Viewer

Length: 513 bp
ATGGTGGAGCCTGCTCACATGGATATTTCATCCCTAACAGCTGAAGCTGCAAAGGAGCATCGCGGTGTGCCCTATATAGTAACAGATGGATTAAATTTGGAAGGTGGTGACTCTATAAGCCTTCGAGTAGTACTGGGACATTATTTTAAGGTTCACCAGATAGGAGTTGAACTAAGAAAGAATGATATGGATTTGACTTGCTTAGCAGGAGAAGTAGCAGAATCTATCCCATTTGGGGAGGCATTAGATCTTCTTGGTGATGATGATACTGATGACAACATTGATGATGATACTAGTGACAGTGTTGTTGATGATACTAGTGACAACGTTGATGATGATACTAGTGACAGTGTTGTTGATGATACTGATGACAACGTTGACAATGATACTAATGACAGTGTTGATGAGGCAGGAGCAAGCTGCATCCCATTTGATGCTGATAATGGAACTGTTAGTGATTATGGTGAAGATGATGAGGCAGGAGGAAGACGTGATCCATTGGCTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.13

Weight (kDa)

4.05

Isoelectric Point (pI)

21.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g32051
rosa_roxburghii Rroxscaffold_3G00231500 Rroxscaffold_3G00231510
rosa_samantha Rh7AG399700 Rh7CG417900 Rh7DG395700 Rh7DG395800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 63
AciI CCGC 1 cut(s) 63
AclI AACGTT 2 cut(s) 327, 375
AclWI GGATC 1 cut(s) 488
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 1 cut(s) 170
AhlI ACTAGT 3 cut(s) 293, 317, 341
AjiI CACGTC 1 cut(s) 491
AluBI AGCT 3 cut(s) 41, 47, 420
AluI AGCT 3 cut(s) 41, 47, 420
AlwI GGATC 1 cut(s) 488
ApeKI GCWGC 2 cut(s) 47, 420
ApoI RAATTY 1 cut(s) 94
AsuHPI GGTGA 4 cut(s) 119, 146, 269, 476
BaeGI GKGCMC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 493
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 2 cut(s) 34, 407
BccI CCATC 1 cut(s) 80
BcuI ACTAGT 3 cut(s) 293, 317, 341
BfaI CTAG 3 cut(s) 294, 318, 342
BglII AGATCT 1 cut(s) 247
BisI GCNGC 2 cut(s) 48, 421
BlpI GCTNAGC 1 cut(s) 202
BlsI GCNGC 2 cut(s) 49, 422
BmcAI AGTACT 1 cut(s) 132
BmgBI CACGTC 1 cut(s) 491
BmiI GGNNCC 1 cut(s) 9
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 3 cut(s) 67, 424, 432
BmuI ACTGGG 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 493
Bpu10I CCTNAGC 1 cut(s) 504
Bpu1102I GCTNAGC 1 cut(s) 202
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 29, 423
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 72
BseXI GCAGC 2 cut(s) 34, 407
Bsh1236I CGCG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 2 cut(s) 247, 493
Bsp1720I GCTNAGC 1 cut(s) 202
BspACI CCGC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 496
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 488
BsrI ACTGG 1 cut(s) 138
BssMI GATC 2 cut(s) 247, 493
Bst4CI ACNGT 4 cut(s) 302, 350, 398, 451
BstC8I GCNNGC 2 cut(s) 12, 418
BstDEI CTNAG 3 cut(s) 173, 202, 504
BstF5I GGATG 2 cut(s) 29, 423
BstFNI CGCG 1 cut(s) 63
BstKTI GATC 2 cut(s) 250, 496
BstMBI GATC 2 cut(s) 247, 493
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSLI GKGCMC 1 cut(s) 72
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 34, 407
BstV2I GAAGAC 1 cut(s) 493
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BtgZI GCGATG 1 cut(s) 44
BtrI CACGTC 1 cut(s) 491
BtsCI GGATG 2 cut(s) 29, 423
BtsIMutI CAGTG 3 cut(s) 307, 355, 403
Cac8I GCNNGC 2 cut(s) 12, 418
Csp6I GTAC 1 cut(s) 131
CviAII CATG 1 cut(s) 19
CviJI RGCY 6 cut(s) 10, 41, 47, 120, 420, 503
CviKI_1 RGCY 6 cut(s) 10, 41, 47, 120, 420, 503
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 3 cut(s) 173, 202, 504
DpnI GATC 2 cut(s) 249, 495
DpnII GATC 2 cut(s) 247, 493
Eco57I CTGAAG 1 cut(s) 63
FaeI CATG 1 cut(s) 22
FaiI YATR 6 cut(s) 20, 75, 77, 116, 188, 462
FaqI GGGAC 1 cut(s) 150
FatI CATG 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 48, 421
FokI GGATG 2 cut(s) 16, 410
Fsp4HI GCNGC 2 cut(s) 48, 421
FspBI CTAG 3 cut(s) 294, 318, 342
GluI GCNGC 2 cut(s) 48, 421
Hin1II CATG 1 cut(s) 22
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 2 cut(s) 110, 221
HphI GGTGA 4 cut(s) 119, 146, 269, 476
Hpy166II GTNNAC 2 cut(s) 154, 379
Hpy8I GTNNAC 2 cut(s) 154, 379
HpyAV CCTTC 2 cut(s) 95, 131
HpyCH4III ACNGT 4 cut(s) 302, 350, 398, 451
HpyCH4IV ACGT 3 cut(s) 327, 375, 490
HpyCH4V TGCA 2 cut(s) 50, 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 3 cut(s) 173, 202, 504
HpySE526I ACGT 3 cut(s) 327, 375, 490
Hsp92II CATG 1 cut(s) 22
Kzo9I GATC 2 cut(s) 247, 493
LmnI GCTCC 3 cut(s) 7, 55, 413
LpnPI CCDG 6 cut(s) 24, 119, 170, 192, 396, 465
Lsp1109I GCAGC 2 cut(s) 34, 407
LweI GCATC 3 cut(s) 67, 424, 432
MaeI CTAG 3 cut(s) 294, 318, 342
MaeII ACGT 3 cut(s) 327, 375, 490
MaeIII GTNAC 5 cut(s) 79, 107, 296, 320, 344
MalI GATC 2 cut(s) 249, 495
MboI GATC 2 cut(s) 247, 493
MboII GAAGA 3 cut(s) 242, 479, 498
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 94
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 5 cut(s) 232, 400, 469, 476, 499
MseI TTAA 2 cut(s) 92, 147
MslI CAYNNNNRTG 1 cut(s) 63
MspA1I CMGCKG 1 cut(s) 41
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 2 cut(s) 247, 493
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 4 cut(s) 107, 296, 320, 344
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 2 cut(s) 49, 422
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Psp1406I AACGTT 2 cut(s) 327, 375
PspN4I GGNNCC 1 cut(s) 9
PsuI RGATCY 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 2 cut(s) 92, 147
SatI GCNGC 2 cut(s) 48, 421
Sau3AI GATC 2 cut(s) 247, 493
ScaI AGTACT 1 cut(s) 132
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 72
SetI ASST 8 cut(s) 43, 49, 106, 153, 330, 378, 422, 493
SfaNI GCATC 3 cut(s) 67, 424, 432
SmiMI CAYNNNNRTG 1 cut(s) 63
SpeI ACTAGT 3 cut(s) 293, 317, 341
Sse9I AATT 1 cut(s) 94
SsiI CCGC 1 cut(s) 63
SspMI CTAG 3 cut(s) 294, 318, 342
TaaI ACNGT 4 cut(s) 302, 350, 398, 451
TaiI ACGT 3 cut(s) 330, 378, 493
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 94
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 92, 147
Tru9I TTAA 2 cut(s) 92, 147
TscAI CASTG 3 cut(s) 307, 355, 403
TseFI GTSAC 4 cut(s) 107, 296, 320, 344
TseI GCWGC 2 cut(s) 47, 420
Tsp45I GTSAC 4 cut(s) 107, 296, 320, 344
TspDTI ATGAA 1 cut(s) 18
TspRI CASTG 3 cut(s) 307, 355, 403
XapI RAATTY 1 cut(s) 94
XspI CTAG 3 cut(s) 294, 318, 342
ZrmI AGTACT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.