Rw1G024860

Mitogen-activated protein kinase kinase kinase 7-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
51248770 .. 51252157
3388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024860.1

Sequence Viewer

Length: 1971 bp
ATGGAGCCTTTCCGAAGGCTTGGGGAGGCTTTAGGAAGTATTAAGTCCTTGATGGTGTTCCGAGACAGTATCCGCATCAATCAGCGGCAGTGCCTTTTGCTGCTCGACATCTTTGGCTCAGCATATGACTTAATAGCCGAGGAGATGAAACACAACCTGAGATTTGAAGAGAAGCACACTAAATGGAGGGTTCTTGAGAAACCATTAAAGGAGCTGCACAGGATCTTCAAAGAAGGAGAGTTCTACATTAGACACTGCTTGGACAACAAGGAATGGTGGGCGAAAGCCATCTCGCTCTATCAGAACACCGATTGCGTTGAGCTTCACATCCACAACTTGCTTTCCTGCATCCCAATTGTCATTGAAGCGATTGAAATTTCAGGAGAAGTGTCAGGGTCGGATTTGAGTGAGATGCAAAGGAGGAAAATTGTGTATGCGGAAAAGTACAAAGAAGCATATAGAGATTGGAAGCTTTTCCAATGGAGATTCGGGAAGCAGTACCTGATTACTCAAGATTTCTGCAATAGATTTGACACAGTATGGAAGGAAGATAGATGGACTCTTCTGAATCAAATCAGAGAAAAAAAACTGATCTCAGGTTCAACAAAGTATGATCGACGGCTCACAGATCTCCTTCTTAAAAGCTTAGAAGGGCCAGAGCCTTGGAATGGGAAGCTCTTGCCTAGCTCAATCCTGGTGGGATCTAAGGAATACCAAGTGAGGCGAAGACTAGGCAGTGGAAGTCAGTACAAAGAGATCTTATGGTTAGGTGAAAGCTTTGCCTCAAGGCAGTTCTATGGGGAAATTGAACCCTTGCTGCCAGAGATCTCTTCATTGTTATCGCTTTCCCACCCGAACGTTGTTCACTGCCTTTGCGGGTTTACAGATGAGGAAAAGAAAGAGTGTTTTCTCATTATGGAGCTGATGAGTAGAGACCTTGGCAGCTACATCAAGGAGATCTGTGGCCCGAGGAAGCAAATTCCATTTTCTCTTCCTGTTGCTATTGATTTGATGCTTCAAATTGCAAGAGGAATGGAATACCTCCACTCCAAGAAAATCTACCATGGAGAATTGAATCCTTGTAACATACTTGTCAAAGCAAGAGGAGTGTCCACAGAAGGTTACTTGCTGGCAAAGGTTTCGGGTTTCGGCCTAACTTCTGTTAAAAACTCCACCCAGAAAAACCCTACAAATCAGAATGGAAGCCCACCTGTTATATGGTATTCTCCAGAAGTTCTGGAAGAGCAAGAACATAGTGAAAGTAGTGAGAAAAAGTATACAGAAAAGTCCGATGTGTATAGCTTTGCGATGGTTTGCTTTGAGCTTCTTACAGGTAAAGTGCCTTTTGAGGATAGTCATCTTCAAGGGGACAAAATGAGCCGAAATATTAGGGCAGGCGAGAGGCCATTGTTCCCCTTCTATTCTCTGAGATATGCCACCAACCTCACAAAGAGATGTTGGCATGCGGATCCAAATCAAAGGCCAAGCTTCTCATCCATCTGTAGGATTCTTCGCTATGTTAAAAGGTTCCTTGCCATGAATCCTGACTATGACAGCCAGCTAGACCAACCAGTGCATATGGTAGATTACTGTGACATCGAGTGGGGGGTTCTGAAAAAGTTCCCTTCCTGGGGGAGCTCTGATCAATTACCATTATGGCAAATCCCATTTCAGATGTTTGTTTATAGGATAGCGGAGAAAGTCAGAAACTCAGGGCTGAAAGATACTTCAGAATCAGGAAGCGACGCTTCGATATGTGGGGATGGAATTGTGACCCCACCAGATGATCCATTCCCAGCAATACCCGAAAGGAAGTGTTCACCTGATAGTACGAACAAGAAACTTCCCTTGTTGAAGAGATCTTCAGATGTGAAAGCCAACAGAGTACCAGTATCAACAAAATATTGCTTGTACAGGATCTATATGCCTTGTCCAGACAACGCTCTGCAAACAAATCACAGGAATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

656

Amino Acids

76.06

Weight (kDa)

8.53

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1221 PF06760 21 - 235 2.6e-103 Protein of unknown function (DUF1221)
PK_Tyr_Ser-Thr PF07714 270 - 503 1.4e-39 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 271 - 501 1.4e-31 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01450
fragaria_vesca FvH4_7g15980
malus_domestica MD01G1076300.v1.1 MD07G1145200.v1.1
prunus_persica Prupe.2G183700_v2.0.a1 Prupe.2G183700_v2.0.a1
pyrus_communis pycom07g14470
rosa_chinensis RchiOBHm_Chr1g0358861
rosa_laevigata RLG00000027921
rosa_multiflora Rmu_sc0008757.1_g000014
rosa_roxburghii Rroxscaffold_4G00297570
rosa_rugosa Rorug01G0265700
rosa_samantha Rh1AG279600 Rh1BG246400 Rh1CG263800 Rh1DG274800
rosa_wichuraiana Rw1G024860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1277
AciI CCGC 6 cut(s) 73, 85, 437, 876, 1466, 1694
AclI AACGTT 1 cut(s) 858
AclWI GGATC 6 cut(s) 230, 709, 1463, 1476, 1781, 1925
AcsI RAATTY 2 cut(s) 375, 978
AcuI CTGAAG 2 cut(s) 1713, 1848
AfaI GTAC 6 cut(s) 446, 500, 749, 1831, 1887, 1913
AfiI CCNNNNNNNGG 4 cut(s) 668, 1503, 1630, 1631
AjnI CCWGG 2 cut(s) 693, 1628
Alw21I GWGCWC 1 cut(s) 1640
Alw26I GTCTC 2 cut(s) 57, 927
AlwI GGATC 6 cut(s) 230, 709, 1463, 1476, 1781, 1925
AlwNI CAGNNNCTG 1 cut(s) 502
Ama87I CYCGRG 1 cut(s) 967
AoxI GGCC 5 cut(s) 653, 964, 1150, 1403, 1481
ApeKI GCWGC 4 cut(s) 100, 214, 817, 942
ApoI RAATTY 2 cut(s) 375, 978
Asp700I GAANNNNTTC 2 cut(s) 473, 1619
AspS9I GGNCC 2 cut(s) 653, 965
AsuHPI GGTGA 2 cut(s) 782, 1812
AvaI CYCGRG 1 cut(s) 967
BamHI GGATCC 1 cut(s) 1468
BanII GRGCYC 1 cut(s) 1640
BbsI GAAGAC 1 cut(s) 733
Bbv12I GWGCWC 1 cut(s) 1640
BbvI GCAGC 4 cut(s) 87, 201, 804, 954
BccI CCATC 6 cut(s) 46, 296, 549, 1303, 1505, 1757
BceAI ACGGC 1 cut(s) 635
BcgI CGANNNNNNTGC 2 cut(s) 1122, 1156
BciT130I CCWGG 2 cut(s) 695, 1630
BciVI GTATCC 1 cut(s) 80
BclI TGATCA 1 cut(s) 1642
BcoDI GTCTC 2 cut(s) 57, 927
BfaI CTAG 3 cut(s) 684, 731, 1562
BfmI CTRYAG 1 cut(s) 1501
BfuI GTATCC 1 cut(s) 80
BglII AGATCT 5 cut(s) 628, 756, 825, 957, 1859
BisI GCNGC 5 cut(s) 86, 101, 215, 818, 943
BlpI GCTNAGC 1 cut(s) 118
BlsI GCNGC 5 cut(s) 87, 102, 216, 819, 944
Bme1390I CCNGG 2 cut(s) 695, 1630
BmeT110I CYCGRG 1 cut(s) 967
BmgT120I GGNCC 2 cut(s) 653, 965
BmiI GGNNCC 3 cut(s) 6, 1470, 1529
BmrFI CCNGG 2 cut(s) 695, 1630
BmsI GCATC 4 cut(s) 84, 357, 402, 1002
BpiI GAAGAC 1 cut(s) 733
BpmI CTGGAG 1 cut(s) 1212
Bpu1102I GCTNAGC 1 cut(s) 118
BpuEI CTTGAG 3 cut(s) 215, 495, 769
BsaBI GATNNNNATC 2 cut(s) 1356, 1473
BsaI GGTCTC 1 cut(s) 927
BsaJI CCNNGG 6 cut(s) 138, 662, 937, 968, 1063, 1629
BsaXI ACNNNNNCTCC 2 cut(s) 1031, 1061
Bsc4I CCNNNNNNNGG 4 cut(s) 668, 1503, 1630, 1631
Bse1I ACTGG 2 cut(s) 1571, 1889
Bse8I GATNNNNATC 2 cut(s) 1356, 1473
BseBI CCWGG 2 cut(s) 695, 1630
BseDI CCNNGG 6 cut(s) 138, 662, 937, 968, 1063, 1629
BseGI GGATG 4 cut(s) 327, 348, 1493, 1768
BseJI GATNNNNATC 2 cut(s) 1356, 1473
BseLI CCNNNNNNNGG 4 cut(s) 668, 1503, 1630, 1631
BseMII CTCAG 5 cut(s) 132, 149, 609, 1418, 1725
BseNI ACTGG 2 cut(s) 1571, 1889
BseRI GAGGAG 2 cut(s) 155, 1119
BseXI GCAGC 4 cut(s) 87, 201, 804, 954
BseYI CCCAGC 1 cut(s) 1795
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 5 cut(s) 655, 966, 1152, 1405, 1483
BsiHKAI GWGCWC 1 cut(s) 1640
BsiHKCI CYCGRG 1 cut(s) 967
BslFI GGGAC 1 cut(s) 1382
BslI CCNNNNNNNGG 4 cut(s) 668, 1503, 1630, 1631
BsmAI GTCTC 2 cut(s) 57, 927
BsmFI GGGAC 1 cut(s) 1382
BsnI GGCC 5 cut(s) 655, 966, 1152, 1405, 1483
Bso31I GGTCTC 1 cut(s) 927
BsoBI CYCGRG 1 cut(s) 967
Bsp1286I GDGCHC 1 cut(s) 1640
Bsp1407I TGTACA 1 cut(s) 1911
Bsp1720I GCTNAGC 1 cut(s) 118
Bsp19I CCATGG 1 cut(s) 1063
BspACI CCGC 6 cut(s) 73, 85, 437, 876, 1466, 1694
BspANI GGCC 5 cut(s) 655, 966, 1152, 1405, 1483
BspCNI CTCAG 5 cut(s) 131, 150, 608, 1419, 1724
BspLI GGNNCC 3 cut(s) 6, 1470, 1529
BspPI GGATC 6 cut(s) 230, 709, 1463, 1476, 1781, 1925
BspQI GCTCTTC 1 cut(s) 1236
BspTNI GGTCTC 1 cut(s) 927
BsrGI TGTACA 1 cut(s) 1911
BsrI ACTGG 2 cut(s) 1571, 1889
BssECI CCNNGG 6 cut(s) 138, 662, 937, 968, 1063, 1629
BssNAI GTATAC 1 cut(s) 1278
BssT1I CCWWGG 3 cut(s) 662, 937, 1063
Bst1107I GTATAC 1 cut(s) 1278
Bst2UI CCWGG 2 cut(s) 695, 1630
Bst4CI ACNGT 3 cut(s) 68, 538, 1592
Bst6I CTCTTC 6 cut(s) 162, 567, 835, 996, 1236, 1850
BstAUI TGTACA 1 cut(s) 1911
BstC8I GCNNGC 4 cut(s) 1131, 1396, 1464, 1559
BstDEI CTNAG 7 cut(s) 118, 158, 595, 646, 705, 1427, 1711
BstDSI CCRYGG 1 cut(s) 1063
BstF5I GGATG 4 cut(s) 327, 348, 1493, 1768
BstMAI GTCTC 2 cut(s) 57, 927
BstNI CCWGG 2 cut(s) 695, 1630
BstNSI RCATGY 1 cut(s) 1466
BstSCI CCNGG 2 cut(s) 693, 1628
BstSFI CTRYAG 1 cut(s) 1501
BstV1I GCAGC 4 cut(s) 87, 201, 804, 954
BstV2I GAAGAC 1 cut(s) 733
BstX2I RGATCY 9 cut(s) 222, 628, 701, 756, 825, 957, 1468, 1859, 1917
BstXI CCANNNNNNTGG 1 cut(s) 663
BstYI RGATCY 9 cut(s) 222, 628, 701, 756, 825, 957, 1468, 1859, 1917
BstZ17I GTATAC 1 cut(s) 1278
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 5 cut(s) 655, 966, 1152, 1405, 1483
BtgI CCRYGG 1 cut(s) 1063
BtgZI GCGATG 1 cut(s) 1322
BtsCI GGATG 4 cut(s) 327, 348, 1493, 1768
BtsI GCAGTG 4 cut(s) 95, 253, 742, 865
BtsIMutI CAGTG 5 cut(s) 95, 253, 742, 865, 1578
Cac8I GCNNGC 4 cut(s) 1131, 1396, 1464, 1559
CaiI CAGNNNCTG 1 cut(s) 502
Cfr13I GGNCC 2 cut(s) 653, 965
CseI GACGC 1 cut(s) 1754
Csp6I GTAC 6 cut(s) 445, 499, 748, 1830, 1886, 1912
CspCI CAANNNNNGTGG 2 cut(s) 678, 713
CviAII CATG 3 cut(s) 1064, 1463, 1537
CviQI GTAC 6 cut(s) 445, 499, 748, 1830, 1886, 1912
DdeI CTNAG 7 cut(s) 118, 158, 595, 646, 705, 1427, 1711
Eam1104I CTCTTC 6 cut(s) 162, 567, 835, 996, 1236, 1850
EarI CTCTTC 6 cut(s) 162, 567, 835, 996, 1236, 1850
Ecl136II GAGCTC 1 cut(s) 1638
Eco130I CCWWGG 3 cut(s) 662, 937, 1063
Eco24I GRGCYC 1 cut(s) 1640
Eco31I GGTCTC 1 cut(s) 927
Eco53kI GAGCTC 1 cut(s) 1638
Eco57I CTGAAG 2 cut(s) 1713, 1848
Eco88I CYCGRG 1 cut(s) 967
EcoICRI GAGCTC 1 cut(s) 1638
EcoRII CCWGG 2 cut(s) 693, 1628
EcoT14I CCWWGG 3 cut(s) 662, 937, 1063
EcoT38I GRGCYC 1 cut(s) 1640
ErhI CCWWGG 3 cut(s) 662, 937, 1063
FaeI CATG 3 cut(s) 1067, 1466, 1540
FalI AAGNNNNNCTT 2 cut(s) 1732, 1764
FaqI GGGAC 1 cut(s) 1382
FatI CATG 3 cut(s) 1063, 1462, 1536
FauI CCCGC 1 cut(s) 869
FauNDI CATATG 2 cut(s) 124, 1578
FbaI TGATCA 1 cut(s) 1642
FblI GTMKAC 1 cut(s) 1277
Fnu4HI GCNGC 5 cut(s) 86, 101, 215, 818, 943
FokI GGATG 4 cut(s) 314, 335, 1480, 1775
FriOI GRGCYC 1 cut(s) 1640
Fsp4HI GCNGC 5 cut(s) 86, 101, 215, 818, 943
FspBI CTAG 3 cut(s) 684, 731, 1562
GluI GCNGC 5 cut(s) 86, 101, 215, 818, 943
GsaI CCCAGC 1 cut(s) 1799
GsuI CTGGAG 1 cut(s) 1212
HaeIII GGCC 5 cut(s) 655, 966, 1152, 1405, 1483
HgaI GACGC 1 cut(s) 1754
Hin1II CATG 3 cut(s) 1067, 1466, 1540
HindIII AAGCTT 4 cut(s) 470, 643, 775, 1486
HinfI GANTC 8 cut(s) 486, 559, 568, 1075, 1507, 1540, 1733, 1963
HphI GGTGA 2 cut(s) 782, 1812
Hpy166II GTNNAC 5 cut(s) 865, 882, 1113, 1278, 1820
Hpy188III TCNNGA 9 cut(s) 194, 381, 490, 512, 1229, 1238, 1544, 1737, 1934
Hpy8I GTNNAC 5 cut(s) 865, 882, 1113, 1278, 1820
Hpy99I CGWCG 2 cut(s) 621, 1748
HpyAV CCTTC 8 cut(s) 9, 227, 538, 644, 644, 1112, 1426, 1635
HpyCH4III ACNGT 3 cut(s) 68, 538, 1592
HpyCH4IV ACGT 1 cut(s) 858
HpyCH4V TGCA 7 cut(s) 217, 348, 415, 522, 1025, 1576, 1948
HpyF3I CTNAG 7 cut(s) 118, 158, 595, 646, 705, 1427, 1711
HpySE526I ACGT 1 cut(s) 858
Hsp92II CATG 3 cut(s) 1067, 1466, 1540
Ksp22I TGATCA 1 cut(s) 1642
LguI GCTCTTC 1 cut(s) 1236
LmnI GCTCC 4 cut(s) 4, 211, 919, 1635
Lsp1109I GCAGC 4 cut(s) 87, 201, 804, 954
LweI GCATC 4 cut(s) 84, 357, 402, 1002
MaeI CTAG 3 cut(s) 684, 731, 1562
MaeII ACGT 1 cut(s) 858
MaeIII GTNAC 4 cut(s) 1082, 1121, 1592, 1771
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 9 cut(s) 222, 628, 701, 756, 825, 957, 1468, 1859, 1917
MhlI GDGCHC 1 cut(s) 1640
MluCI AATT 9 cut(s) 354, 375, 426, 804, 978, 1020, 1070, 1646, 1767
MlyI GAGTC 1 cut(s) 553
MmeI TCCRAC 1 cut(s) 378
MroXI GAANNNNTTC 2 cut(s) 473, 1619
MseI TTAA 6 cut(s) 42, 131, 206, 639, 1164, 1521
MspA1I CMGCKG 1 cut(s) 85
MspR9I CCNGG 2 cut(s) 695, 1630
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 2 cut(s) 695, 1630
NcoI CCATGG 1 cut(s) 1063
NdeI CATATG 2 cut(s) 124, 1578
NlaIII CATG 3 cut(s) 1067, 1466, 1540
NlaIV GGNNCC 3 cut(s) 6, 1470, 1529
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 1592, 1771
NspI RCATGY 1 cut(s) 1466
PaeI GCATGC 1 cut(s) 1466
PciSI GCTCTTC 1 cut(s) 1236
PdmI GAANNNNTTC 2 cut(s) 473, 1619
PfeI GAWTC 7 cut(s) 486, 568, 1075, 1507, 1540, 1733, 1963
PkrI GCNGC 5 cut(s) 87, 102, 216, 819, 944
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
Psp124BI GAGCTC 1 cut(s) 1640
Psp1406I AACGTT 1 cut(s) 858
Psp6I CCWGG 2 cut(s) 693, 1628
PspFI CCCAGC 1 cut(s) 1795
PspGI CCWGG 2 cut(s) 693, 1628
PspN4I GGNNCC 3 cut(s) 6, 1470, 1529
PspPI GGNCC 2 cut(s) 653, 965
PstNI CAGNNNCTG 1 cut(s) 502
PsuI RGATCY 9 cut(s) 222, 628, 701, 756, 825, 957, 1468, 1859, 1917
RsaI GTAC 6 cut(s) 446, 500, 749, 1831, 1887, 1913
RsaNI GTAC 6 cut(s) 445, 499, 748, 1830, 1886, 1912
SacI GAGCTC 1 cut(s) 1640
SapI GCTCTTC 1 cut(s) 1236
SaqAI TTAA 6 cut(s) 42, 131, 206, 639, 1164, 1521
SatI GCNGC 5 cut(s) 86, 101, 215, 818, 943
Sau96I GGNCC 2 cut(s) 653, 965
SchI GAGTC 1 cut(s) 553
ScrFI CCNGG 2 cut(s) 695, 1630
SduI GDGCHC 1 cut(s) 1640
SfaNI GCATC 4 cut(s) 84, 357, 402, 1002
SfcI CTRYAG 1 cut(s) 1501
SmlI CTYRAG 3 cut(s) 194, 510, 784
SmoI CTYRAG 3 cut(s) 194, 510, 784
SphI GCATGC 1 cut(s) 1466
Sse9I AATT 9 cut(s) 354, 375, 426, 804, 978, 1020, 1070, 1646, 1767
SsiI CCGC 6 cut(s) 73, 85, 437, 876, 1466, 1694
SspI AATATT 2 cut(s) 1387, 1904
SspMI CTAG 3 cut(s) 684, 731, 1562
SstI GAGCTC 1 cut(s) 1640
StyD4I CCNGG 2 cut(s) 693, 1628
StyI CCWWGG 3 cut(s) 662, 937, 1063
TaaI ACNGT 3 cut(s) 68, 538, 1592
TaiI ACGT 1 cut(s) 861
TaqI TCGA 4 cut(s) 105, 616, 1599, 1751
TasI AATT 9 cut(s) 354, 375, 426, 804, 978, 1020, 1070, 1646, 1767
TatI WGTACW 3 cut(s) 444, 747, 1911
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 7 cut(s) 486, 568, 1075, 1507, 1540, 1733, 1963
Tru1I TTAA 6 cut(s) 42, 131, 206, 639, 1164, 1521
Tru9I TTAA 6 cut(s) 42, 131, 206, 639, 1164, 1521
TscAI CASTG 5 cut(s) 95, 260, 742, 872, 1578
TseFI GTSAC 2 cut(s) 1592, 1771
TseI GCWGC 4 cut(s) 100, 214, 817, 942
Tsp45I GTSAC 2 cut(s) 1592, 1771
TspDTI ATGAA 3 cut(s) 161, 822, 1553
TspRI CASTG 5 cut(s) 95, 260, 742, 872, 1578
XapI RAATTY 2 cut(s) 375, 978
XceI RCATGY 1 cut(s) 1466
XcmI CCANNNNNNNNNTGG 1 cut(s) 1215
XmiI GTMKAC 1 cut(s) 1277
XmnI GAANNNNTTC 2 cut(s) 473, 1619
XspI CTAG 3 cut(s) 684, 731, 1562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.