Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0013716

Physical Location & Seq

Genomic Coordinates Forward (+)

61040969 .. 61044789

Gene Structure 3821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G032760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCCGGAGTACGGCGGGGACGGATCGGAGTTCACGGTGCGGCGGCGGTTCAAGGACGTGGTGACGTTATCGGACCGGTTGTCCGAGTCGTACCGCGGGTTCTTCATCCCAATCCGACCCGATAAGAGCGTGGTGGAGAGCCAGGTGATGCAAATCGAGCAGTTCGTCGAGCAGAGAAGGGCGGCGTTGAGTAAGTACCTGAACAAGCTCGCGGCGCACCCGGCGATCAGGAGGAGCGAGGAATTGAGAGTGTTTTTGGTTGTGAAAGGGAAGCTGCCGTTGATGAGGAGTGTGGATGTGGCGTCGAGGATGTTGGATGGGGCGGTGAGGCTGCCGAGGCAGTTGGTTGGTGAGGCGGTGGATGTGAACGAGGCGGCGCAGCCGGCCAAGGGCGGGAGAGACTTGATGAGGATCTTCAGAGAGTTGAAGCAGTCTGTGGTGAATGACTGGGGAGGTGTGAAGCCAATGGTGGCGGAGGAGGATAAGGAGTTCTTGGAGAAGAAGGAGAAGGTGGTGGAGCTTGAGCAACAGCTTAGCAATATGTCACAGCAGGCTGAGTTGCTAGTAAAAGCTCAGCAAGATATGGGAGAGACTATGGGGGAATTGGGTTTGGCGTTTGTGAAGCTGACCAAGCTTGAAACGGAAGGAGCCATGTTCGAATCTCAAACAACACGAGCCACTGACATGAAAAATGTGGCTACAGCAGCTGTTAAATCTAGCCGATTGTATCGGGAGTTAAATGCACAAACTGTTAAACATTTGGACAAACTCCATGAATATCTTGGAGTAATGTTAGCAGTCAACGGTGCGTTTTCAGACCGAACAAGCGCTTTACTAACGGTGCAAACTCTTTCATCAGACTTGGTTTCCCTGCAGTCAAGGATTGAGAAGCTTGAAGCTGCAGCATCCAAAATATTTGGTGGAGACAGGTCCAGGATGCGGAAAATAGAGGAGTTAAAAGAAACTTTAAAAGTTAGTGAGGAAGCCAAAGCTTGTGCAGTTAAAGAGTATGAACGCATCAAGGAAAATAACAGGAATGAACTTGAAAGGCTTGATAGAGAGAGACATGACGATTTTATGGGAATGTTGAAAGGATTTGTTCTTAATCAGGCAGGATATGCAGAAAAGATGGCAAATGCATGGGAGAAGCTTGCGGAAGAAACCAGTGGGTACGCAAAAGATGGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009791 GO:0009987 GO:0010008 GO:0010467 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019538 GO:0019898 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032585 GO:0032588 GO:0032991 GO:0035091 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0051179 GO:0051234 GO:0051604 GO:0071704 GO:0071840 GO:0090351 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

396

Amino Acids

44.69

Weight (kDa)

6.97

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PX	PF00787	6 - 87	7.4e-17	PX domain
Vps5	PF09325	154 - 386	1.9e-20	Vps5 C terminal like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013716)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25340 FvH4_7g25340 FvH4_7g25340
malus_domestica	MD01G1159500.v1.1 MD07G1228000.v1.1
prunus_persica	Prupe.2G257500_v2.0.a1
pyrus_communis	pycom01g17580 pycom07g20640
rosa_chinensis	RchiOBHm_Chr1g0371251
rosa_laevigata	RLG00000026976
rosa_roxburghii	Rroxscaffold_4G00285840
rosa_rugosa	Rorug01G0362400 Rorug01G0362400
rosa_samantha	Rh1AG372500 Rh1BG336000 Rh1CG349400 Rh1DG367100
rosa_wichuraiana	Rw1G032760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	96, 212
AclWI	GGATC	2 cut(s)	31, 419
AcoI	YGGCCR	1 cut(s)	384
AcuI	CTGAAG	1 cut(s)	400
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	4 cut(s)	11, 92, 197, 1172
AfeI	AGCGCT	1 cut(s)	829
AfiI	CCNNNNNNNGG	4 cut(s)	11, 389, 393, 939
AgeI	ACCGGT	1 cut(s)	75
AgsI	TTSAA	6 cut(s)	52, 427, 638, 896, 1046, 1090
AhdI	GACNNNNNGTC	1 cut(s)	79
AjiI	CACGTC	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	141, 932
AloI	GAACNNNNNNTCC	2 cut(s)	473, 505
Alw26I	GTCTC	4 cut(s)	393, 584, 918, 1057
AlwI	GGATC	2 cut(s)	31, 419
AlwNI	CAGNNNCTG	1 cut(s)	707
Aor51HI	AGCGCT	1 cut(s)	829
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	7 cut(s)	274, 331, 379, 704, 899, 902, 1185
AsiGI	ACCGGT	1 cut(s)	75
AspLEI	GCGC	3 cut(s)	217, 379, 830
AspS9I	GGNCC	2 cut(s)	73, 930
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	5 cut(s)	73, 157, 337, 362, 451
AsuII	TTCGAA	1 cut(s)	657
AvaII	GGWCC	2 cut(s)	73, 930
BauI	CACGAG	1 cut(s)	672
BbvI	GCAGC	6 cut(s)	261, 318, 391, 716, 886, 914
BccI	CCATC	3 cut(s)	311, 1123, 1175
BceAI	ACGGC	2 cut(s)	28, 262
BciT130I	CCWGG	2 cut(s)	143, 934
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	4 cut(s)	393, 584, 918, 1057
BfaI	CTAG	2 cut(s)	563, 717
BfmI	CTRYAG	3 cut(s)	699, 872, 900
BfoI	RGCGCY	1 cut(s)	831
BlpI	GCTNAGC	2 cut(s)	533, 573
Bme1390I	CCNGG	3 cut(s)	143, 221, 934
Bme18I	GGWCC	2 cut(s)	73, 930
BmeRI	GACNNNNNGTC	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	73, 930
BmiI	GGNNCC	1 cut(s)	649
BmrFI	CCNGG	3 cut(s)	143, 221, 934
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	4 cut(s)	138, 914, 927, 1026
BmuI	ACTGGG	1 cut(s)	457
Bpu1102I	GCTNAGC	2 cut(s)	533, 573
Bpu14I	TTCGAA	1 cut(s)	657
BpuEI	CTTGAG	1 cut(s)	542
BpuMI	CCSGG	1 cut(s)	221
BsaBI	GATNNNNATC	2 cut(s)	152, 410
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	3 cut(s)	94, 335, 387
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 389, 393, 939
Bse118I	RCCGGY	2 cut(s)	75, 382
Bse1I	ACTGG	2 cut(s)	452, 1164
Bse8I	GATNNNNATC	2 cut(s)	152, 410
BseBI	CCWGG	2 cut(s)	143, 934
BseDI	CCNNGG	3 cut(s)	94, 335, 387
BseGI	GGATG	7 cut(s)	105, 301, 315, 322, 367, 905, 942
BseJI	GATNNNNATC	2 cut(s)	152, 410
BseLI	CCNNNNNNNGG	4 cut(s)	11, 389, 393, 939
BseMII	CTCAG	2 cut(s)	546, 587
BseNI	ACTGG	2 cut(s)	452, 1164
BseRI	GAGGAG	4 cut(s)	247, 301, 491, 965
BseXI	GCAGC	6 cut(s)	261, 318, 391, 716, 886, 914
BsgI	GTGCAG	1 cut(s)	1017
Bsh1236I	CGCG	2 cut(s)	96, 212
BshFI	GGCC	1 cut(s)	386
BshTI	ACCGGT	1 cut(s)	75
BsiSI	CCGG	4 cut(s)	5, 76, 221, 383
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	4 cut(s)	11, 389, 393, 939
BsmAI	GTCTC	4 cut(s)	393, 584, 918, 1057
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	657
Bsp143I	GATC	3 cut(s)	23, 225, 411
Bsp1720I	GCTNAGC	2 cut(s)	533, 573
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	2 cut(s)	547, 586
BspFNI	CGCG	2 cut(s)	96, 212
BspLI	GGNNCC	1 cut(s)	649
BspMAI	CTGCAG	2 cut(s)	876, 904
BspPI	GGATC	2 cut(s)	31, 419
BspT104I	TTCGAA	1 cut(s)	657
BsrFI	RCCGGY	2 cut(s)	75, 382
BsrI	ACTGG	2 cut(s)	452, 1164
BssAI	RCCGGY	2 cut(s)	75, 382
BssECI	CCNNGG	3 cut(s)	94, 335, 387
BssMI	GATC	3 cut(s)	23, 225, 411
BssNI	GRCGYC	1 cut(s)	302
BssSI	CACGAG	1 cut(s)	672
BssT1I	CCWWGG	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	672
Bst2UI	CCWGG	2 cut(s)	143, 934
Bst4CI	ACNGT	4 cut(s)	37, 751, 806, 841
BstACI	GRCGYC	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	1118
BstBI	TTCGAA	1 cut(s)	657
BstC8I	GCNNGC	4 cut(s)	210, 384, 552, 1152
BstDEI	CTNAG	3 cut(s)	533, 555, 573
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	7 cut(s)	105, 301, 315, 322, 367, 905, 942
BstFNI	CGCG	2 cut(s)	96, 212
BstH2I	RGCGCY	1 cut(s)	831
BstHHI	GCGC	3 cut(s)	217, 379, 830
BstKTI	GATC	3 cut(s)	26, 228, 414
BstMAI	GTCTC	4 cut(s)	393, 584, 918, 1057
BstMBI	GATC	3 cut(s)	23, 225, 411
BstMWI	GCNNNNNNNGC	8 cut(s)	157, 214, 221, 337, 383, 631, 704, 1118
BstNI	CCWGG	2 cut(s)	143, 934
BstSCI	CCNGG	3 cut(s)	141, 219, 932
BstSFI	CTRYAG	3 cut(s)	699, 872, 900
BstUI	CGCG	2 cut(s)	96, 212
BstV1I	GCAGC	6 cut(s)	261, 318, 391, 716, 886, 914
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	386
BtgI	CCRYGG	1 cut(s)	94
BtrI	CACGTC	1 cut(s)	58
BtsCI	GGATG	7 cut(s)	105, 301, 315, 322, 367, 905, 942
BtsIMutI	CAGTG	2 cut(s)	678, 1171
Cac8I	GCNNGC	4 cut(s)	210, 384, 552, 1152
CaiI	CAGNNNCTG	1 cut(s)	707
CfoI	GCGC	3 cut(s)	217, 379, 830
Cfr10I	RCCGGY	2 cut(s)	75, 382
Cfr13I	GGNCC	2 cut(s)	73, 930
Cfr42I	CCGCGG	1 cut(s)	97
CpoI	CGGWCCG	1 cut(s)	73
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	4 cut(s)	10, 91, 196, 1171
CspAI	ACCGGT	1 cut(s)	75
CspI	CGGWCCG	1 cut(s)	73
CviAII	CATG	5 cut(s)	652, 685, 773, 1067, 1140
CviQI	GTAC	4 cut(s)	10, 91, 196, 1171
DdeI	CTNAG	3 cut(s)	533, 555, 573
DpnI	GATC	3 cut(s)	25, 227, 413
DpnII	GATC	3 cut(s)	23, 225, 411
DraI	TTTAAA	1 cut(s)	969
DriI	GACNNNNNGTC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	384
Eam1105I	GACNNNNNGTC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	387
Eco47I	GGWCC	2 cut(s)	73, 930
Eco47III	AGCGCT	1 cut(s)	829
Eco57I	CTGAAG	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	141, 932
EcoT14I	CCWWGG	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	1141
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	5 cut(s)	655, 688, 776, 1070, 1143
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	5 cut(s)	651, 684, 772, 1066, 1139
FauI	CCCGC	3 cut(s)	8, 89, 386
FokI	GGATG	7 cut(s)	92, 308, 322, 329, 374, 892, 949
FspBI	CTAG	2 cut(s)	563, 717
GlaI	GCGC	3 cut(s)	216, 378, 829
HaeII	RGCGCY	1 cut(s)	831
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	4 cut(s)	5, 76, 221, 383
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	3 cut(s)	217, 379, 830
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	5 cut(s)	655, 688, 776, 1070, 1143
Hin6I	GCGC	3 cut(s)	215, 377, 828
HinP1I	GCGC	3 cut(s)	215, 377, 828
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	4 cut(s)	632, 890, 990, 1148
HinfI	GANTC	2 cut(s)	86, 659
HpaII	CCGG	4 cut(s)	5, 76, 221, 383
HphI	GGTGA	5 cut(s)	73, 157, 337, 362, 451
Hpy166II	GTNNAC	3 cut(s)	33, 367, 802
Hpy188I	TCNGA	7 cut(s)	28, 73, 85, 116, 419, 817, 859
Hpy188III	TCNNGA	2 cut(s)	229, 731
Hpy8I	GTNNAC	3 cut(s)	33, 367, 802
Hpy99I	CGWCG	2 cut(s)	170, 307
HpyAV	CCTTC	4 cut(s)	171, 496, 502, 638
HpyCH4III	ACNGT	4 cut(s)	37, 751, 806, 841
HpyCH4IV	ACGT	2 cut(s)	57, 65
HpyCH4V	TGCA	8 cut(s)	151, 743, 844, 874, 902, 998, 1121, 1139
HpyF10VI	GCNNNNNNNGC	8 cut(s)	157, 214, 221, 337, 383, 631, 704, 1118
HpyF3I	CTNAG	3 cut(s)	533, 555, 573
HpySE526I	ACGT	2 cut(s)	57, 65
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	5 cut(s)	655, 688, 776, 1070, 1143
HspAI	GCGC	3 cut(s)	215, 377, 828
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
KspI	CCGCGG	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	23, 225, 411
LmnI	GCTCC	3 cut(s)	234, 517, 647
Lsp1109I	GCAGC	6 cut(s)	261, 318, 391, 716, 886, 914
LweI	GCATC	4 cut(s)	138, 914, 927, 1026
MaeI	CTAG	2 cut(s)	563, 717
MaeII	ACGT	2 cut(s)	57, 65
MaeIII	GTNAC	2 cut(s)	61, 543
MalI	GATC	3 cut(s)	25, 227, 413
MboI	GATC	3 cut(s)	23, 225, 411
MboII	GAAGA	4 cut(s)	94, 406, 511, 1169
MflI	RGATCY	1 cut(s)	411
MluCI	AATT	2 cut(s)	242, 602
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	2 cut(s)	139, 294
Mph1103I	ATGCAT	1 cut(s)	1141
MroNI	GCCGGC	1 cut(s)	382
MseI	TTAA	7 cut(s)	711, 737, 753, 956, 968, 1002, 1104
MslI	CAYNNNNRTG	1 cut(s)	683
MspA1I	CMGCKG	3 cut(s)	96, 707, 1188
MspI	CCGG	4 cut(s)	5, 76, 221, 383
MspR9I	CCNGG	3 cut(s)	143, 221, 934
MvaI	CCWGG	2 cut(s)	143, 934
MvnI	CGCG	2 cut(s)	96, 212
MwoI	GCNNNNNNNGC	8 cut(s)	157, 214, 221, 337, 383, 631, 704, 1118
NaeI	GCCGGC	1 cut(s)	384
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	3 cut(s)	23, 225, 411
NgoMIV	GCCGGC	1 cut(s)	382
NlaIII	CATG	5 cut(s)	655, 688, 776, 1070, 1143
NlaIV	GGNNCC	1 cut(s)	649
NmeAIII	GCCGAG	1 cut(s)	360
NmuCI	GTSAC	2 cut(s)	61, 543
NsiI	ATGCAT	1 cut(s)	1141
NspV	TTCGAA	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	659
PfoI	TCCNGGA	1 cut(s)	932
PinAI	ACCGGT	1 cut(s)	75
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	141, 932
PspGI	CCWGG	2 cut(s)	141, 932
PspN4I	GGNNCC	1 cut(s)	649
PspPI	GGNCC	2 cut(s)	73, 930
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PstI	CTGCAG	2 cut(s)	876, 904
PstNI	CAGNNNCTG	1 cut(s)	707
PsuI	RGATCY	1 cut(s)	411
PvuII	CAGCTG	2 cut(s)	707, 1188
RsaI	GTAC	4 cut(s)	11, 92, 197, 1172
RsaNI	GTAC	4 cut(s)	10, 91, 196, 1171
RseI	CAYNNNNRTG	1 cut(s)	683
Rsr2I	CGGWCCG	1 cut(s)	73
RsrII	CGGWCCG	1 cut(s)	73
SacII	CCGCGG	1 cut(s)	97
SaqAI	TTAA	7 cut(s)	711, 737, 753, 956, 968, 1002, 1104
Sau3AI	GATC	3 cut(s)	23, 225, 411
Sau96I	GGNCC	2 cut(s)	73, 930
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	3 cut(s)	143, 221, 934
SfaNI	GCATC	4 cut(s)	138, 914, 927, 1026
SfcI	CTRYAG	3 cut(s)	699, 872, 900
Sfr303I	CCGCGG	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	657
SgrBI	CCGCGG	1 cut(s)	97
SinI	GGWCC	2 cut(s)	73, 930
SmiMI	CAYNNNNRTG	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	2 cut(s)	242, 602
SspI	AATATT	1 cut(s)	915
SspMI	CTAG	2 cut(s)	563, 717
StyD4I	CCNGG	3 cut(s)	141, 219, 932
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	4 cut(s)	37, 751, 806, 841
TaiI	ACGT	2 cut(s)	60, 68
TaqI	TCGA	4 cut(s)	156, 168, 305, 657
TaqII	GACCGA	1 cut(s)	834
TasI	AATT	2 cut(s)	242, 602
TauI	GCSGC	5 cut(s)	43, 46, 185, 215, 377
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	7 cut(s)	711, 737, 753, 956, 968, 1002, 1104
Tru9I	TTAA	7 cut(s)	711, 737, 753, 956, 968, 1002, 1104
TscAI	CASTG	2 cut(s)	685, 1171
TseFI	GTSAC	2 cut(s)	61, 543
TseI	GCWGC	7 cut(s)	274, 331, 379, 704, 899, 902, 1185
Tsp45I	GTSAC	2 cut(s)	61, 543
TspDTI	ATGAA	6 cut(s)	94, 701, 789, 843, 1026, 1053
TspGWI	ACGGA	2 cut(s)	36, 656
TspRI	CASTG	2 cut(s)	685, 1171
VpaK11BI	GGWCC	2 cut(s)	73, 930
XcmI	CCANNNNNNNNNTGG	1 cut(s)	779
XspI	CTAG	2 cut(s)	563, 717
Zsp2I	ATGCAT	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.