Rw3G008470

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0009696
Physical Location & Seq
Forward (+)
7856906 .. 7861775
4870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008470.1

Sequence Viewer

Length: 3831 bp
ATGAGCGGGGAGCATCCGTTGCTGTCATCACCGGATTCTCCATCAAAGCCACTTGTGCCGCCCTCTTCTCTAGCTGAGAGACTCGAGCAGCTCTGCCTTGATGAATCCAGTTCTTCTTCCGTTCTTGACGGCATTGATGATGGCCAAGGTGAATCGTTGTTAGCGAGGGAATACACTGCTGTTCCTGACTGCGGTGTGAAACCAGGAAAGCAGTTTTTTCCGGTAGAGCGTGAGTGCCGTCCGCAGTTTCCGTTGGAATACCCCACGCGGCATAAAAAACGCCAGGTATCGTGGGGTACAATGGAACTGCATAGTATCAATAGTAATCCAGCGTCCCATGACGTCCCCCAGGCTCCATCTAGGGTTCTGGAAAAGGCGAACAAGTCTCAGGGGAGTCACCACAAAGGCATTCAATTTGAAGATAACCTCCTACATGAAGACAATCCAAGGTTGATCTATATTGATGATCCGAAGAAAACAAATGACAAGTATGAGTTCACTGGCAATGAGATTCGAACTAGCAAGTACACCTTAATCACCTTCTTGCCCAAGAATGTTTTCATTCAGTTTCACCGGGTTGCTTATTTGTATTTTCTAGCTATTGCCGTTCTCAATCAGCTTCCGCCTCTGCTGTGTTTGGAAGAACGGTATGGCTATGAGGATTGGCGAAGACATAGATCGGACAGGAATGAAAACAACCGGGAGTCTCTGATCCTTCAATCTGGGCAATTTCAACCAAAGAAATGGAAAAATATTCAAGTGGGCGAGGTTCTGAAGATTCGTGCTGATGATACAATTCCTTGTGATATAGTTTTGTTAGGAACAAGTGACCCTAGTGGAATTGCCTACATTCAGACAATGAATCTGGATGGTGAGTCAAACCTCAAAACAAGGTATGCACGCCAGGAAACATCTTCAGCTGTAGTTTCAGCAGTAGCTGATGGGTGTGCAATTATGGGGATCATCAGATGTGAACAACCAAATCGGAATATCTATGAGTTTACAGCCAACATGGAGTTTAATGGACATAGGTTTCCCCTAACACAGTCAAACATAGTTTTGCGTGGTTGCCAGCTGAAGAACACGGAGTGGATAATTGGTGTTGTGGTATATGCTGGACAGGAAACAAAGGCAATGTTGAATAGTGCAGCTTCTCCTTCCAAGAGAAGCAAACTTGAAGGCTACATGAACAGAGAAACCTTGTGGTTGTCAATTTTCCTTTTTGTCATGTGTTCAGTTGTGGCTGCTGGCATGGGCACGTGGCTAATACGCCATAAATATCAGGTTGATACGTTGCCTTATTACCGGAAAAGATTCTTCACTAATTGGGGGAAGCTTAATGGGAAAACCTATAAATATTATGGGATACCTATGGAGATTTTTTTCTCCTTTTTGAGTTCTGTCATAGTGTTTCAGATAATGATACCAATCGCTCTGTATATTAGTATTGAGTTGGTTCGTTTGGGCCAGTCATATTTCATGATTGAAGACAGGCATATGTTCGACTGTAGCTCTGGCTCAAGGTTCCAGTGCAGATCCTTGAATATCAATGAGGATCTGGGTCAAATACGATATATATTTTCAGACAAAACAGGGACACTTACTGAAAATAAGATGGCATTCCGCAGAGCAAGCATATATGGGAGGGATTATGGGAGCCGTGTGCTTGTGGCTGATCAATTGCAGGAAGAAAATAATACAGGAGAAGGTTTAGCTAGAAAGAGATGGAAGCTTAAATCTGATGTTGCTGTCGATTATGAGCTCATGGAGTTGTTGCACAAAGACTTGAGTGAAGATGAGAGGATTGCTGCACATGAGTTTTTCCTTACGTTGGCAGCTTGCAATACTGTGGTTCCTATAGTCAGTACTAGTACATCTTCCAGTTGTGCTAAGGGTGATGTTGATTCTATTGATTATCAGGGGGAATCCCCGGACGAGCAAGCACTAGTTACTGCAGCCTCTGGTTATAGATATACTCTCTTTGAGCGCACATCGGGACATATTGCAATTGATGTCAATGGTGAGAAACTAAGGTTGGATGTATTGGGTCTGCATGAATTTGACAGTGTGCGAAAACGAATGTCAGTTGTTATCAGATTTCCAAACAATACTATAAAGGTATTGGTGAAAGGTGCTGATACCTCTATGCTCAGCATATTAGCGAATGACTCTGAAAGAGATGATGAACTGAGACATTCAACACAGAGCCATTTGAGTGAATATTCCTCACATGGTTTGCGTACTCTTGTGATTGCTGCAAGAGATCTTACAAATGAAGAACTTGAACAGTGGCAAAGCATGTATGAAGATGCAAGTACCTCATTGACTGATCGATCCTTAAAACTACGTCAAACAGCAGCTCTTATTGAATCCAACTTAAAGCTACTTGGGGCAACTGCAATTGAGGATAGGCTACAAGATGGTGTGCCAGAAGCTATTGAGTCCCTCAGGCAAGCAGGAATTAAGGTCTGGGTTTTGACTGGAGATAAGCAAGAGACAGCTATTTCAATTGGTGTATCATGCAAACTGTTGACAGCAGATATGCAACAAATTATCATAAATGGAACTTCTGAGGCTGAATGCAGAAATCTTTTGGTTGATGCTATGGAAAAATATGGTGTGCAGTCATCAAATAAAAGAAATCAGAGTTCAAAATGCAAAAGCAATGCTGCAAGTGATTATCTTGAGTTACCTAATGATGCAAAGACATCTAATGTGCCAAAATGGCATGAAGCAAAGGAAGAAGGAAAGATAAGTGCACCATTAGCACTCATAATTGATGGGAACAGTTTGGTATACATTTTGGAGAAAGATCTGCAGTCGGAGCTTTTCGACCTTGCCACTTCCTGTAGTGTGGTTGTATGCTGTCGTGTTGCACCATTGCAGAAAGCTGGAATTGTTGATCTAATTAAGACCCGCACTGATGATATGACACTGGCTATAGGTGATGGGGCAAATGATGTTTCTATGATCCAAATGGCGGATGTTGGTGTTGGAATTTGTGGACAGGAGGGTCGTCAAGCTGTGATGGCATCAGACTTTGCCATGGGACAGTTTCGGTTTTTGAAAAGATTGCTTCTGGTGCATGGACACTGGAATTATCAGCGTATTGGTTATTTGATTCTTTACAACTTCTACCGCAACGCAGTTTTTGTGCTGATGCTATTTTGGTATATATTGTCGACAGCATTTTCAACAACTTCGGCGTTGACAGATTGGAGTAGTGTTTTCTATTCTCTTATATATACGTCTATCCCTACAATTATTGTTGGTGTACTGGACAAAGATCTGAGCCACAAGACCCTGTTACAATACCCAAAATTGTATGGTGCTGGCCATAGACAGGAAGCATATAATCCAAATCTTTTCTGGATAACGATGCTTGACACCCTATGGCAGAGTCTTGTTCTCTTCTATGTACCCCAGTTCACCTATAAGGAGAGCACAATAGACATATGGAGCATGGGCAGTTTGTGGACCATAGCAGTAGTTATCCTTGTTAATGTACATTTGGCAATGGACATTCATCGGTGGGTATTTATCACTCATATTGCAGTATGGGGATCAATAATCATCACATATGCCTGTGTAGTGATATTGGATTCCATACCTGTTTATCCCAATTACTGGACTTTTTACCATTTGGCATGTTCTCCTACCTATTGGATCACCATTTTGCTTATAATAGTTGTAGCCTTGCTCCCTCGTTTTGTGTACAAAGTTGTACATCATATTTTTTGGCCCTCAGATATCCAGATAGCTAGAGAAGGTGAGATATTAAGCAGGAAACATAAGCATTTGGGCTCAGAAAAAGATGAAGATTCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_ATPase E1-E2_ATPase Hydrolase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

1276

Amino Acids

144.4

Weight (kDa)

6.06

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhoLip_ATPase_N PF16209 152 - 210 8.3e-21 Phospholipid-translocating ATPase N-terminal
Cation_ATPase PF13246 642 - 806 2.4e-14 P-type ATPase, cytoplasmic domain N
PhoLip_ATPase_C PF16212 1009 - 1249 1.4e-79 Phospholipid-translocating P-type ATPase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3683
AasI GACNNNNNNGTC 1 cut(s) 3012
AatII GACGTC 1 cut(s) 345
AccB7I CCANNNNNTGG 1 cut(s) 3627
AccBSI CCGCTC 1 cut(s) 6
AccI GTMKAC 2 cut(s) 2796, 3182
AccII CGCG 1 cut(s) 268
AclWI GGATC 9 cut(s) 461, 706, 968, 1530, 1563, 2328, 2965, 3571, 3674
AcoI YGGCCR 2 cut(s) 142, 3334
AcsI RAATTY 2 cut(s) 2057, 2997
AcuI CTGAAG 3 cut(s) 794, 900, 1097
AcvI CACGTG 1 cut(s) 1260
AcyI GRCGYC 1 cut(s) 342
AdeI CACNNNGTG 1 cut(s) 1089
AfiI CCNNNNNNNGG 5 cut(s) 191, 1831, 2980, 3343, 3627
AhlI ACTAGT 2 cut(s) 1868, 1945
AjnI CCWGG 4 cut(s) 202, 282, 348, 903
AjuI GAANNNNNNNTTGG 4 cut(s) 542, 574, 2018, 2050
Alw21I GWGCWC 3 cut(s) 1764, 2761, 3446
Alw26I GTCTC 5 cut(s) 73, 390, 711, 2185, 2489
Alw44I GTGCAC 1 cut(s) 2757
AlwI GGATC 9 cut(s) 461, 706, 968, 1530, 1563, 2328, 2965, 3571, 3674
AlwNI CAGNNNCTG 2 cut(s) 938, 1961
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 4 cut(s) 142, 1465, 3334, 3740
ApaLI GTGCAC 1 cut(s) 2757
ApeKI GCWGC 9 cut(s) 88, 1148, 1244, 1808, 1835, 1955, 2255, 2357, 2669
ApoI RAATTY 2 cut(s) 2057, 2997
Asp700I GAANNNNTTC 2 cut(s) 557, 1313
AspLEI GCGC 1 cut(s) 1989
AspS9I GGNCC 3 cut(s) 1465, 3477, 3741
AsuC2I CCSGG 3 cut(s) 575, 701, 1931
AsuII TTCGAA 1 cut(s) 514
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 1 cut(s) 3477
AxyI CCTNAGG 1 cut(s) 2447
BaeGI GKGCMC 2 cut(s) 1259, 2761
BalI TGGCCA 2 cut(s) 144, 3336
BanII GRGCYC 2 cut(s) 1764, 3806
BbrPI CACGTG 1 cut(s) 1260
BbsI GAAGAC 3 cut(s) 444, 676, 1494
Bbv12I GWGCWC 3 cut(s) 1764, 2761, 3446
BbvI GCAGC 9 cut(s) 100, 1160, 1231, 1795, 1847, 1967, 2242, 2369, 2656
BceAI ACGGC 4 cut(s) 145, 222, 590, 1644
BciT130I CCWGG 4 cut(s) 204, 284, 350, 905
BciVI GTATCC 1 cut(s) 1359
BclI TGATCA 1 cut(s) 1675
BcnI CCSGG 3 cut(s) 575, 701, 1931
BcoDI GTCTC 5 cut(s) 73, 390, 711, 2185, 2489
BcuI ACTAGT 2 cut(s) 1868, 1945
BfaI CTAG 9 cut(s) 71, 360, 519, 596, 834, 1716, 1869, 1946, 3762
BfmI CTRYAG 7 cut(s) 921, 1507, 1857, 1953, 2816, 2848, 2940
BfuI GTATCC 1 cut(s) 1359
BglI GCCNNNNNGGC 1 cut(s) 2725
BglII AGATCT 3 cut(s) 2263, 2812, 3286
BlpI GCTNAGC 1 cut(s) 2150
BmcAI AGTACT 1 cut(s) 1867
Bme1390I CCNGG 7 cut(s) 204, 284, 350, 575, 701, 905, 1931
Bme18I GGWCC 1 cut(s) 3477
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 3 cut(s) 1465, 3477, 3741
BmiI GGNNCC 4 cut(s) 354, 1526, 1658, 1854
BmrFI CCNGG 7 cut(s) 204, 284, 350, 575, 701, 905, 1931
BmrI ACTGGG 1 cut(s) 3418
BmsI GCATC 7 cut(s) 22, 2299, 2590, 2689, 3041, 3150, 3369
BmuI ACTGGG 1 cut(s) 3418
BpiI GAAGAC 3 cut(s) 444, 676, 1494
BpmI CTGGAG 1 cut(s) 2502
Bpu10I CCTNAGC 1 cut(s) 1890
Bpu1102I GCTNAGC 1 cut(s) 2150
Bpu14I TTCGAA 1 cut(s) 514
BpuEI CTTGAG 3 cut(s) 1504, 1807, 2705
BpuMI CCSGG 3 cut(s) 575, 701, 1931
Bsa29I ATCGAT 1 cut(s) 2332
BsaAI YACGTR 1 cut(s) 1260
BsaBI GATNNNNATC 1 cut(s) 1427
BsaHI GRCGYC 1 cut(s) 342
BsaJI CCNNGG 5 cut(s) 145, 348, 446, 1929, 3045
BsaWI WCCGGW 3 cut(s) 31, 220, 1305
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 5 cut(s) 191, 1831, 2980, 3343, 3627
Bse21I CCTNAGG 1 cut(s) 2447
Bse3DI GCAATG 5 cut(s) 511, 1140, 2671, 2879, 3522
Bse8I GATNNNNATC 1 cut(s) 1427
BseBI CCWGG 4 cut(s) 204, 284, 350, 905
BseCI ATCGAT 1 cut(s) 2332
BseDI CCNNGG 5 cut(s) 145, 348, 446, 1929, 3045
BseGI GGATG 4 cut(s) 13, 874, 2044, 2989
BseJI GATNNNNATC 1 cut(s) 1427
BseLI CCNNNNNNNGG 5 cut(s) 191, 1831, 2980, 3343, 3627
BseMI GCAATG 5 cut(s) 511, 1140, 2671, 2879, 3522
BseMII CTCAG 9 cut(s) 66, 401, 2164, 2180, 2461, 2562, 3281, 3759, 3819
BseSI GKGCMC 2 cut(s) 1259, 2761
BseXI GCAGC 9 cut(s) 100, 1160, 1231, 1795, 1847, 1967, 2242, 2369, 2656
BsgI GTGCAG 4 cut(s) 1167, 1552, 1794, 2642
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 4 cut(s) 144, 1467, 3336, 3742
BshVI ATCGAT 1 cut(s) 2332
BsiHKAI GWGCWC 3 cut(s) 1764, 2761, 3446
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 6 cut(s) 32, 221, 574, 700, 1306, 1931
BslFI GGGAC 6 cut(s) 319, 329, 1609, 2010, 2428, 3063
BslI CCNNNNNNNGG 5 cut(s) 191, 1831, 2980, 3343, 3627
BsmAI GTCTC 5 cut(s) 73, 390, 711, 2185, 2489
BsmFI GGGAC 6 cut(s) 319, 329, 1609, 2010, 2428, 3063
BsmI GAATGC 3 cut(s) 408, 1619, 2585
BsnI GGCC 4 cut(s) 144, 1467, 3336, 3742
BsoBI CYCGRG 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 514
Bsp1286I GDGCHC 5 cut(s) 1259, 1764, 2761, 3446, 3806
Bsp1407I TGTACA 3 cut(s) 3505, 3714, 3724
Bsp1720I GCTNAGC 1 cut(s) 2150
Bsp19I CCATGG 1 cut(s) 3045
BspANI GGCC 4 cut(s) 144, 1467, 3336, 3742
BspCNI CTCAG 9 cut(s) 67, 400, 2163, 2181, 2460, 2563, 3282, 3758, 3818
BspDI ATCGAT 1 cut(s) 2332
BspFNI CGCG 1 cut(s) 268
BspHI TCATGA 1 cut(s) 1479
BspLI GGNNCC 4 cut(s) 354, 1526, 1658, 1854
BspMAI CTGCAG 2 cut(s) 1957, 2820
BspPI GGATC 9 cut(s) 461, 706, 968, 1530, 1563, 2328, 2965, 3571, 3674
BspT104I TTCGAA 1 cut(s) 514
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 5 cut(s) 511, 1140, 2671, 2879, 3522
BsrGI TGTACA 3 cut(s) 3505, 3714, 3724
BssECI CCNNGG 5 cut(s) 145, 348, 446, 1929, 3045
BssNAI GTATAC 1 cut(s) 2797
BssNI GRCGYC 1 cut(s) 342
BssT1I CCWWGG 3 cut(s) 145, 446, 3045
Bst1107I GTATAC 1 cut(s) 2797
Bst2UI CCWGG 4 cut(s) 204, 284, 350, 905
Bst4CI ACNGT 9 cut(s) 648, 1047, 1508, 1849, 2066, 2289, 2529, 2789, 3054
Bst6I CTCTTC 2 cut(s) 70, 3416
BstACI GRCGYC 1 cut(s) 342
BstAPI GCANNNNNTGC 1 cut(s) 19
BstAUI TGTACA 3 cut(s) 3505, 3714, 3724
BstBAI YACGTR 1 cut(s) 1260
BstBI TTCGAA 1 cut(s) 514
BstC8I GCNNGC 8 cut(s) 901, 1073, 1249, 1633, 1840, 1941, 2454, 3334
BstDSI CCRYGG 1 cut(s) 3045
BstF5I GGATG 4 cut(s) 13, 874, 2044, 2989
BstFNI CGCG 1 cut(s) 268
BstHHI GCGC 1 cut(s) 1989
BstMAI GTCTC 5 cut(s) 73, 390, 711, 2185, 2489
BstMWI GCNNNNNNNGC 8 cut(s) 19, 55, 1632, 2725, 2765, 2824, 3029, 3082
BstNI CCWGG 4 cut(s) 204, 284, 350, 905
BstNSI RCATGY 2 cut(s) 2302, 3651
BstSCI CCNGG 7 cut(s) 202, 282, 348, 573, 699, 903, 1929
BstSFI CTRYAG 7 cut(s) 921, 1507, 1857, 1953, 2816, 2848, 2940
BstSLI GKGCMC 2 cut(s) 1259, 2761
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 9 cut(s) 100, 1160, 1231, 1795, 1847, 1967, 2242, 2369, 2656
BstV2I GAAGAC 3 cut(s) 444, 676, 1494
BstX2I RGATCY 5 cut(s) 1535, 1555, 2263, 2812, 3286
BstXI CCANNNNNNTGG 1 cut(s) 744
BstYI RGATCY 5 cut(s) 1535, 1555, 2263, 2812, 3286
BstZ17I GTATAC 1 cut(s) 2797
Bsu15I ATCGAT 1 cut(s) 2332
Bsu36I CCTNAGG 1 cut(s) 2447
BsuI GTATCC 1 cut(s) 1359
BsuRI GGCC 4 cut(s) 144, 1467, 3336, 3742
BsuTUI ATCGAT 1 cut(s) 2332
BtgI CCRYGG 1 cut(s) 3045
BtsCI GGATG 4 cut(s) 13, 874, 2044, 2989
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 8 cut(s) 174, 498, 1535, 2071, 2294, 2919, 2933, 3091
Cac8I GCNNGC 8 cut(s) 901, 1073, 1249, 1633, 1840, 1941, 2454, 3334
CaiI CAGNNNCTG 2 cut(s) 938, 1961
CciI TCATGA 1 cut(s) 1479
CfoI GCGC 1 cut(s) 1989
Cfr13I GGNCC 3 cut(s) 1465, 3477, 3741
ClaI ATCGAT 1 cut(s) 2332
CseI GACGC 1 cut(s) 321
DraIII CACNNNGTG 1 cut(s) 1089
DrdI GACNNNNNNGTC 1 cut(s) 3012
DseDI GACNNNNNNGTC 1 cut(s) 3012
EaeI YGGCCR 2 cut(s) 142, 3334
Eam1104I CTCTTC 2 cut(s) 70, 3416
EarI CTCTTC 2 cut(s) 70, 3416
EciI GGCGGA 2 cut(s) 612, 2996
Ecl136II GAGCTC 1 cut(s) 1762
Eco130I CCWWGG 3 cut(s) 145, 446, 3045
Eco24I GRGCYC 2 cut(s) 1764, 3806
Eco32I GATATC 1 cut(s) 3751
Eco47I GGWCC 1 cut(s) 3477
Eco53kI GAGCTC 1 cut(s) 1762
Eco57I CTGAAG 3 cut(s) 794, 900, 1097
Eco72I CACGTG 1 cut(s) 1260
Eco81I CCTNAGG 1 cut(s) 2447
Eco88I CYCGRG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 1762
EcoRII CCWGG 4 cut(s) 202, 282, 348, 903
EcoRV GATATC 1 cut(s) 3751
EcoT14I CCWWGG 3 cut(s) 145, 446, 3045
EcoT38I GRGCYC 2 cut(s) 1764, 3806
ErhI CCWWGG 3 cut(s) 145, 446, 3045
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FaqI GGGAC 6 cut(s) 319, 329, 1609, 2010, 2428, 3063
FauI CCCGC 1 cut(s) 2924
FauNDI CATATG 3 cut(s) 1497, 3455, 3580
FbaI TGATCA 1 cut(s) 1675
FblI GTMKAC 2 cut(s) 2796, 3182
FokI GGATG 3 cut(s) 881, 2051, 2996
FriOI GRGCYC 2 cut(s) 1764, 3806
FspBI CTAG 9 cut(s) 71, 360, 519, 596, 834, 1716, 1869, 1946, 3762
GlaI GCGC 1 cut(s) 1988
GsuI CTGGAG 1 cut(s) 2502
HaeIII GGCC 4 cut(s) 144, 1467, 3336, 3742
HapII CCGG 6 cut(s) 32, 221, 574, 700, 1306, 1931
HgaI GACGC 1 cut(s) 321
HhaI GCGC 1 cut(s) 1989
Hin1I GRCGYC 1 cut(s) 342
Hin6I GCGC 1 cut(s) 1987
HinP1I GCGC 1 cut(s) 1987
HincII GTYRAC 3 cut(s) 2532, 3183, 3210
HindII GTYRAC 3 cut(s) 2532, 3183, 3210
HindIII AAGCTT 2 cut(s) 1334, 1730
HpaII CCGG 6 cut(s) 32, 221, 574, 700, 1306, 1931
Hpy188III TCNNGA 9 cut(s) 125, 185, 368, 866, 1480, 1995, 2684, 3370, 3754
HpyAV CCTTC 7 cut(s) 550, 725, 1167, 1172, 1700, 2738, 3761
HpyCH4III ACNGT 9 cut(s) 648, 1047, 1508, 1849, 2066, 2289, 2529, 2789, 3054
HpyCH4IV ACGT 6 cut(s) 342, 1259, 1292, 1829, 2347, 3248
HpyF10VI GCNNNNNNNGC 8 cut(s) 19, 55, 1632, 2725, 2765, 2824, 3029, 3082
HpySE526I ACGT 6 cut(s) 342, 1259, 1292, 1829, 2347, 3248
Hsp92I GRCGYC 1 cut(s) 342
HspAI GCGC 1 cut(s) 1987
Ksp22I TGATCA 1 cut(s) 1675
LmnI GCTCC 6 cut(s) 10, 358, 1656, 2824, 3459, 3705
Lsp1109I GCAGC 9 cut(s) 100, 1160, 1231, 1795, 1847, 1967, 2242, 2369, 2656
LweI GCATC 7 cut(s) 22, 2299, 2590, 2689, 3041, 3150, 3369
MaeI CTAG 9 cut(s) 71, 360, 519, 596, 834, 1716, 1869, 1946, 3762
MaeII ACGT 6 cut(s) 342, 1259, 1292, 1829, 2347, 3248
MaeIII GTNAC 5 cut(s) 395, 827, 1948, 2688, 3306
MbiI CCGCTC 1 cut(s) 6
MfeI CAATTG 4 cut(s) 1679, 2007, 2400, 2508
MflI RGATCY 5 cut(s) 1535, 1555, 2263, 2812, 3286
MhlI GDGCHC 5 cut(s) 1259, 1764, 2761, 3446, 3806
MlsI TGGCCA 2 cut(s) 144, 3336
MluNI TGGCCA 2 cut(s) 144, 3336
MlyI GAGTC 7 cut(s) 75, 403, 713, 884, 2162, 2450, 3409
MmeI TCCRAC 5 cut(s) 234, 2016, 2397, 2802, 2974
Mox20I TGGCCA 2 cut(s) 144, 3336
MroXI GAANNNNTTC 2 cut(s) 557, 1313
MscI TGGCCA 2 cut(s) 144, 3336
MslI CAYNNNNRTG 1 cut(s) 2214
Msp20I TGGCCA 2 cut(s) 144, 3336
MspA1I CMGCKG 2 cut(s) 920, 1075
MspI CCGG 6 cut(s) 32, 221, 574, 700, 1306, 1931
MspR9I CCNGG 7 cut(s) 204, 284, 350, 575, 701, 905, 1931
MunI CAATTG 4 cut(s) 1679, 2007, 2400, 2508
Mva1269I GAATGC 3 cut(s) 408, 1619, 2585
MvaI CCWGG 4 cut(s) 204, 284, 350, 905
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 8 cut(s) 19, 55, 1632, 2725, 2765, 2824, 3029, 3082
NciI CCSGG 3 cut(s) 575, 701, 1931
NcoI CCATGG 1 cut(s) 3045
NdeI CATATG 3 cut(s) 1497, 3455, 3580
NlaIV GGNNCC 4 cut(s) 354, 1526, 1658, 1854
NmuCI GTSAC 2 cut(s) 395, 827
NspI RCATGY 2 cut(s) 2302, 3651
NspV TTCGAA 1 cut(s) 514
PaeR7I CTCGAG 1 cut(s) 83
PagI TCATGA 1 cut(s) 1479
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PctI GAATGC 3 cut(s) 408, 1619, 2585
PdmI GAANNNNTTC 2 cut(s) 557, 1313
PflMI CCANNNNNTGG 1 cut(s) 3627
PleI GAGTC 7 cut(s) 75, 402, 712, 883, 2162, 2449, 3408
PmaCI CACGTG 1 cut(s) 1260
PmlI CACGTG 1 cut(s) 1260
PpsI GAGTC 7 cut(s) 75, 402, 712, 883, 2162, 2449, 3408
Ppu21I YACGTR 1 cut(s) 1260
PsiI TTATAA 1 cut(s) 3683
Psp124BI GAGCTC 1 cut(s) 1764
Psp6I CCWGG 4 cut(s) 202, 282, 348, 903
PspCI CACGTG 1 cut(s) 1260
PspGI CCWGG 4 cut(s) 202, 282, 348, 903
PspN4I GGNNCC 4 cut(s) 354, 1526, 1658, 1854
PspPI GGNCC 3 cut(s) 1465, 3477, 3741
PspXI VCTCGAGB 1 cut(s) 83
PstI CTGCAG 2 cut(s) 1957, 2820
PstNI CAGNNNCTG 2 cut(s) 938, 1961
PsuI RGATCY 5 cut(s) 1535, 1555, 2263, 2812, 3286
PvuII CAGCTG 2 cut(s) 920, 1075
RseI CAYNNNNRTG 1 cut(s) 2214
SacI GAGCTC 1 cut(s) 1764
SalI GTCGAC 1 cut(s) 3181
Sau96I GGNCC 3 cut(s) 1465, 3477, 3741
ScaI AGTACT 1 cut(s) 1867
SchI GAGTC 7 cut(s) 75, 403, 713, 884, 2162, 2450, 3409
ScrFI CCNGG 7 cut(s) 204, 284, 350, 575, 701, 905, 1931
SduI GDGCHC 5 cut(s) 1259, 1764, 2761, 3446, 3806
SfaNI GCATC 7 cut(s) 22, 2299, 2590, 2689, 3041, 3150, 3369
SfcI CTRYAG 7 cut(s) 921, 1507, 1857, 1953, 2816, 2848, 2940
Sfr274I CTCGAG 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 514
SinI GGWCC 1 cut(s) 3477
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 2214
SmlI CTYRAG 4 cut(s) 83, 1519, 1786, 2684
SmoI CTYRAG 4 cut(s) 83, 1519, 1786, 2684
SpeI ACTAGT 2 cut(s) 1868, 1945
SspI AATATT 3 cut(s) 754, 1358, 2222
SspMI CTAG 9 cut(s) 71, 360, 519, 596, 834, 1716, 1869, 1946, 3762
SstI GAGCTC 1 cut(s) 1764
StyD4I CCNGG 7 cut(s) 202, 282, 348, 573, 699, 903, 1929
StyI CCWWGG 3 cut(s) 145, 446, 3045
TaaI ACNGT 9 cut(s) 648, 1047, 1508, 1849, 2066, 2289, 2529, 2789, 3054
TaiI ACGT 6 cut(s) 345, 1262, 1295, 1832, 2350, 3251
TaqI TCGA 7 cut(s) 84, 514, 1503, 1752, 2332, 2832, 3182
TatI WGTACW 7 cut(s) 525, 1865, 1871, 3274, 3505, 3714, 3724
TauI GCSGC 2 cut(s) 61, 271
TscAI CASTG 8 cut(s) 181, 505, 1535, 2071, 2294, 2926, 2940, 3098
TseFI GTSAC 2 cut(s) 395, 827
TseI GCWGC 9 cut(s) 88, 1148, 1244, 1808, 1835, 1955, 2255, 2357, 2669
Tsp45I GTSAC 2 cut(s) 395, 827
TspGWI ACGGA 4 cut(s) 6, 109, 240, 1100
TspRI CASTG 8 cut(s) 181, 505, 1535, 2071, 2294, 2926, 2940, 3098
Van91I CCANNNNNTGG 1 cut(s) 3627
VneI GTGCAC 1 cut(s) 2757
VpaK11BI GGWCC 1 cut(s) 3477
XapI RAATTY 2 cut(s) 2057, 2997
XceI RCATGY 2 cut(s) 2302, 3651
XcmI CCANNNNNNNNNTGG 1 cut(s) 3366
XhoI CTCGAG 1 cut(s) 83
XmiI GTMKAC 2 cut(s) 2796, 3182
XmnI GAANNNNTTC 2 cut(s) 557, 1313
XspI CTAG 9 cut(s) 71, 360, 519, 596, 834, 1716, 1869, 1946, 3762
ZraI GACGTC 1 cut(s) 343
ZrmI AGTACT 1 cut(s) 1867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.