AT1G01120

3-ketoacyl-coa synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015371
Physical Location & Seq
Reverse (-)
57164 .. 59215
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01120.1

Sequence Viewer

Length: 1587 bp
ATGGAGAGAACAAACAGCATTGAGATGGATCGAGAGAGATTAACGGCGGAGATGGCGTTTCGAGATTCATCATCGGCCGTTATAAGAATTCGAAGACGTTTGCCGGATTTATTAACGTCCGTTAAGCTCAAATACGTGAAGCTTGGACTTCACAACTCTTGCAACGTGACCACCATTCTCTTCTTCTTAATTATTCTTCCTTTAACCGGAACCGTGCTGGTTCAGCTAACCGGTCTAACGTTCGATACGTTCTCTGAGCTTTGGTCTAACCAGGCGGTTCAACTCGACACGGCGACGAGACTTACCTGCTTGGTTTTCCTCTCCTTCGTTTTGACCCTCTACGTGGCTAACCGGTCTAAACCGGTTTACCTAGTGGATTTCTCCTGCTACAAACCGGAAGACGAGCGTAAAATATCAGTAGATTCGTTCTTGACGATGACTGAGGAAAATGGATCATTCACCGATGACACGGTTCAGTTCCAGCAAAGAATCTCGAACCGGGCCGGTTTGGGAGACGAGACGTATCTGCCACGTGGCATAACTTCAACGCCCCCGAAGCTAAATATGTCAGAGGCACGTGCCGAAGCTGAAGCCGTTATGTTTGGAGCCTTAGATTCCCTCTTCGAGAAAACCGGAATTAAACCGGCCGAAGTCGGAATCTTGATAGTAAACTGCAGCTTATTCAATCCGACGCCGTCTCTATCAGCGATGATCGTGAACCATTACAAGATGAGAGAAGACATCAAAAGTTACAACCTCGGAGGAATGGGTTGCTCCGCCGGATTAATCTCAATCGATCTCGCTAACAATCTCCTCAAAGCAAACCCTAATTCTTACGCTGTCGTGGTAAGCACGGAAAACATAACCCTAAACTGGTACTTCGGAAATGACCGGTCAATGCTCCTCTGCAACTGCATCTTCCGAATGGGCGGAGCTGCGATTCTCCTCTCTAACCGCCGTCAAGACCGGAAGAAGTCAAAGTACTCGCTGGTCAACGTCGTTCGAACACATAAAGGATCAGACGACAAGAACTACAATTGCGTGTACCAGAAGGAAGACGAGAGAGGAACAATCGGTGTCTCTTTAGCTAGAGAGCTCATGTCTGTCGCCGGAGACGCTCTGAAAACAAACATCACGACTTTAGGACCGATGGTTCTTCCATTGTCAGAGCAGTTGATGTTCTTGATTTCCTTGGTCAAAAGGAAGATGTTCAAGTTAAAAGTTAAACCGTATATTCCGGATTTCAAGCTAGCTTTCGAGCATTTCTGTATTCACGCAGGAGGTAGAGCGGTTCTAGACGAAGTGCAGAAGAATCTTGATCTCAAAGATTGGCACATGGAACCTTCTAGAATGACTTTGCACAGATTTGGTAACACTTCGAGTAGCTCGCTTTGGTATGAGATGGCTTATACCGAAGCTAAGGGTCGGGTTAAAGCTGGTGACCGACTTTGGCAGATTGCGTTTGGATCGGGTTTCAAGTGTAATAGTGCGGTTTGGAAAGCGTTACGACCGGTTTCGACGGAGGAGATGACCGGTAATGCTTGGGCTGGTTCGATTGATCAATATCCGGTTAAAGTTGTGCAATGA

Protein Analysis

528

Amino Acids

59.28

Weight (kDa)

8.9

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 114 - 403 7.3e-144 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 420 - 500 7.7e-11 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 422 - 498 4.4e-08 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01120
fragaria_vesca FvH4_7g17440
malus_domestica MD01G1087400.v1.1 MD07G1157600.v1.1
prunus_persica Prupe.2G196000_v2.0.a1
pyrus_communis pycom01g11140 pycom07g15410
rosa_chinensis RchiOBHm_Chr1g0360891
rosa_laevigata RLG00000027773 RLG00000027775
rosa_multiflora Rmu_sc0000677.1_g000044
rosa_rugosa Rorug01G0282900
rosa_samantha Rh1AG294400 Rh1BG259400 Rh1DG289400
rosa_wichuraiana Rw1G026040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 314
AccBSI CCGCTC 1 cut(s) 1289
AccIII TCCGGA 1 cut(s) 1237
AciI CCGC 7 cut(s) 47, 275, 777, 930, 955, 1289, 1490
AclI AACGTT 1 cut(s) 239
AclWI GGATC 4 cut(s) 36, 460, 1024, 1474
AcoI YGGCCR 2 cut(s) 75, 645
AcsI RAATTY 1 cut(s) 87
AcuI CTGAAG 1 cut(s) 609
AcvI CACGTG 2 cut(s) 533, 578
AcyI GRCGYC 1 cut(s) 692
AfaI GTAC 3 cut(s) 878, 983, 1046
AfiI CCNNNNNNNGG 3 cut(s) 206, 343, 873
AgeI ACCGGT 6 cut(s) 230, 351, 361, 891, 1510, 1532
AgsI TTSAA 6 cut(s) 281, 546, 685, 1213, 1246, 1477
AjnI CCWGG 1 cut(s) 270
AloI GAACNNNNNNTCC 2 cut(s) 1137, 1169
Alw21I GWGCWC 1 cut(s) 1098
Alw26I GTCTC 6 cut(s) 292, 507, 512, 702, 1084, 1107
AlwI GGATC 4 cut(s) 36, 460, 1024, 1474
Aor13HI TCCGGA 1 cut(s) 1237
AoxI GGCC 3 cut(s) 75, 501, 645
ApeKI GCWGC 2 cut(s) 675, 935
ApoI RAATTY 1 cut(s) 87
AseI ATTAAT 1 cut(s) 785
AsiGI ACCGGT 6 cut(s) 230, 351, 361, 891, 1510, 1532
Asp700I GAANNNNTTC 1 cut(s) 1208
AspS9I GGNCC 2 cut(s) 501, 1145
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 2 cut(s) 451, 1451
AsuII TTCGAA 2 cut(s) 91, 1003
AsuNHI GCTAGC 1 cut(s) 1249
AvaII GGWCC 1 cut(s) 1145
BanII GRGCYC 1 cut(s) 1098
BarI GAAGNNNNNNTAC 2 cut(s) 965, 997
BbrPI CACGTG 2 cut(s) 533, 578
BbsI GAAGAC 4 cut(s) 100, 405, 744, 1062
Bbv12I GWGCWC 1 cut(s) 1098
BbvI GCAGC 2 cut(s) 687, 922
BccI CCATC 4 cut(s) 19, 46, 1144, 1396
BceAI ACGGC 6 cut(s) 60, 62, 306, 578, 679, 942
BciT130I CCWGG 1 cut(s) 272
BclI TGATCA 1 cut(s) 1558
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 6 cut(s) 292, 507, 512, 702, 1084, 1107
BfaI CTAG 5 cut(s) 371, 1089, 1250, 1295, 1347
BfmI CTRYAG 1 cut(s) 673
BfuAI ACCTGC 1 cut(s) 314
BisI GCNGC 2 cut(s) 676, 936
BlsI GCNGC 2 cut(s) 677, 937
BmcAI AGTACT 1 cut(s) 983
Bme1390I CCNGG 2 cut(s) 272, 500
Bme18I GGWCC 1 cut(s) 1145
BmgT120I GGNCC 2 cut(s) 501, 1145
BmiI GGNNCC 3 cut(s) 211, 607, 1341
BmrFI CCNGG 2 cut(s) 272, 500
BmsI GCATC 1 cut(s) 924
BmtI GCTAGC 1 cut(s) 1253
BpiI GAAGAC 4 cut(s) 100, 405, 744, 1062
Bpu10I CCTNAGC 1 cut(s) 1419
Bpu14I TTCGAA 2 cut(s) 91, 1003
BpuMI CCSGG 1 cut(s) 500
Bsa29I ATCGAT 1 cut(s) 795
BsaAI YACGTR 4 cut(s) 136, 343, 533, 578
BsaBI GATNNNNATC 1 cut(s) 1563
BsaHI GRCGYC 1 cut(s) 692
BsaJI CCNNGG 2 cut(s) 757, 1191
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 343, 873
Bse118I RCCGGY 8 cut(s) 230, 351, 361, 503, 643, 891, 1510, 1532
Bse1I ACTGG 1 cut(s) 878
Bse8I GATNNNNATC 1 cut(s) 1563
BseAI TCCGGA 1 cut(s) 1237
BseBI CCWGG 1 cut(s) 272
BseCI ATCGAT 1 cut(s) 795
BseDI CCNNGG 2 cut(s) 757, 1191
BseJI GATNNNNATC 1 cut(s) 1563
BseLI CCNNNNNNNGG 3 cut(s) 206, 343, 873
BseMII CTCAG 2 cut(s) 246, 432
BseNI ACTGG 1 cut(s) 878
BseRI GAGGAG 4 cut(s) 803, 893, 935, 1538
BseX3I CGGCCG 2 cut(s) 75, 645
BseXI GCAGC 2 cut(s) 687, 922
BsgI GTGCAG 1 cut(s) 1325
Bsh1285I CGRYCG 3 cut(s) 78, 648, 1511
BshFI GGCC 3 cut(s) 77, 503, 647
BshTI ACCGGT 6 cut(s) 230, 351, 361, 891, 1510, 1532
BshVI ATCGAT 1 cut(s) 795
BsiEI CGRYCG 3 cut(s) 78, 648, 1511
BsiHKAI GWGCWC 1 cut(s) 1098
BslI CCNNNNNNNGG 3 cut(s) 206, 343, 873
BsmAI GTCTC 6 cut(s) 292, 507, 512, 702, 1084, 1107
BsmBI CGTCTC 4 cut(s) 507, 512, 702, 1107
BsnI GGCC 3 cut(s) 77, 503, 647
Bsp119I TTCGAA 2 cut(s) 91, 1003
Bsp1286I GDGCHC 1 cut(s) 1098
Bsp13I TCCGGA 1 cut(s) 1237
Bsp143I GATC 8 cut(s) 28, 452, 711, 796, 1016, 1318, 1466, 1558
BspACI CCGC 7 cut(s) 47, 275, 777, 930, 955, 1289, 1490
BspANI GGCC 3 cut(s) 77, 503, 647
BspCNI CTCAG 2 cut(s) 247, 433
BspDI ATCGAT 1 cut(s) 795
BspEI TCCGGA 1 cut(s) 1237
BspLI GGNNCC 3 cut(s) 211, 607, 1341
BspMAI CTGCAG 1 cut(s) 677
BspMI ACCTGC 1 cut(s) 314
BspOI GCTAGC 1 cut(s) 1253
BspPI GGATC 4 cut(s) 36, 460, 1024, 1474
BspT104I TTCGAA 2 cut(s) 91, 1003
BsrBI CCGCTC 1 cut(s) 1289
BsrFI RCCGGY 8 cut(s) 230, 351, 361, 503, 643, 891, 1510, 1532
BsrI ACTGG 1 cut(s) 878
BssAI RCCGGY 8 cut(s) 230, 351, 361, 503, 643, 891, 1510, 1532
BssECI CCNNGG 2 cut(s) 757, 1191
BssMI GATC 8 cut(s) 28, 452, 711, 796, 1016, 1318, 1466, 1558
BssNI GRCGYC 1 cut(s) 692
BssT1I CCWWGG 1 cut(s) 1191
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 3 cut(s) 214, 472, 1230
Bst6I CTCTTC 2 cut(s) 185, 626
BstACI GRCGYC 1 cut(s) 692
BstBAI YACGTR 4 cut(s) 136, 343, 533, 578
BstBI TTCGAA 2 cut(s) 91, 1003
BstC8I GCNNGC 2 cut(s) 1251, 1388
BstDEI CTNAG 4 cut(s) 255, 441, 610, 1419
BstEII GGTNACC 1 cut(s) 1439
BstKTI GATC 8 cut(s) 31, 455, 714, 799, 1019, 1321, 1469, 1561
BstMAI GTCTC 6 cut(s) 292, 507, 512, 702, 1084, 1107
BstMBI GATC 8 cut(s) 28, 452, 711, 796, 1016, 1318, 1466, 1558
BstMCI CGRYCG 3 cut(s) 78, 648, 1511
BstMWI GCNNNNNNNGC 4 cut(s) 53, 223, 556, 1115
BstNI CCWGG 1 cut(s) 272
BstPI GGTNACC 1 cut(s) 1439
BstSCI CCNGG 2 cut(s) 270, 498
BstSFI CTRYAG 1 cut(s) 673
BstV1I GCAGC 2 cut(s) 687, 922
BstV2I GAAGAC 4 cut(s) 100, 405, 744, 1062
BstZI CGGCCG 2 cut(s) 75, 645
Bsu15I ATCGAT 1 cut(s) 795
BsuRI GGCC 3 cut(s) 77, 503, 647
BsuTUI ATCGAT 1 cut(s) 795
BtgZI GCGATG 1 cut(s) 722
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 2 cut(s) 1251, 1388
Cfr10I RCCGGY 8 cut(s) 230, 351, 361, 503, 643, 891, 1510, 1532
Cfr13I GGNCC 2 cut(s) 501, 1145
ClaI ATCGAT 1 cut(s) 795
CseI GACGC 2 cut(s) 700, 1124
Csp6I GTAC 3 cut(s) 877, 982, 1045
CspAI ACCGGT 6 cut(s) 230, 351, 361, 891, 1510, 1532
CviAII CATG 2 cut(s) 1099, 1336
CviQI GTAC 3 cut(s) 877, 982, 1045
DdeI CTNAG 4 cut(s) 255, 441, 610, 1419
DpnI GATC 8 cut(s) 30, 454, 713, 798, 1018, 1320, 1468, 1560
DpnII GATC 8 cut(s) 28, 452, 711, 796, 1016, 1318, 1466, 1558
EaeI YGGCCR 2 cut(s) 75, 645
EagI CGGCCG 2 cut(s) 75, 645
Eam1104I CTCTTC 2 cut(s) 185, 626
EarI CTCTTC 2 cut(s) 185, 626
EciI GGCGGA 3 cut(s) 62, 766, 945
Ecl136II GAGCTC 1 cut(s) 1096
EclXI CGGCCG 2 cut(s) 75, 645
Eco130I CCWWGG 1 cut(s) 1191
Eco24I GRGCYC 1 cut(s) 1098
Eco47I GGWCC 1 cut(s) 1145
Eco52I CGGCCG 2 cut(s) 75, 645
Eco53kI GAGCTC 1 cut(s) 1096
Eco57I CTGAAG 1 cut(s) 609
Eco72I CACGTG 2 cut(s) 533, 578
Eco91I GGTNACC 1 cut(s) 1439
EcoICRI GAGCTC 1 cut(s) 1096
EcoO65I GGTNACC 1 cut(s) 1439
EcoRI GAATTC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 1191
EcoT38I GRGCYC 1 cut(s) 1098
ErhI CCWWGG 1 cut(s) 1191
Esp3I CGTCTC 4 cut(s) 507, 512, 702, 1107
FaeI CATG 2 cut(s) 1102, 1339
FatI CATG 2 cut(s) 1098, 1335
FbaI TGATCA 1 cut(s) 1558
Fnu4HI GCNGC 2 cut(s) 676, 936
FriOI GRGCYC 1 cut(s) 1098
Fsp4HI GCNGC 2 cut(s) 676, 936
FspBI CTAG 5 cut(s) 371, 1089, 1250, 1295, 1347
GluI GCNGC 2 cut(s) 676, 936
HaeIII GGCC 3 cut(s) 77, 503, 647
HgaI GACGC 2 cut(s) 700, 1124
Hin1I GRCGYC 1 cut(s) 692
Hin1II CATG 2 cut(s) 1102, 1339
HincII GTYRAC 1 cut(s) 994
HindII GTYRAC 1 cut(s) 994
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 7 cut(s) 65, 422, 489, 614, 657, 940, 1312
HphI GGTGA 2 cut(s) 451, 1451
Hpy166II GTNNAC 5 cut(s) 367, 670, 718, 994, 1045
Hpy8I GTNNAC 5 cut(s) 367, 670, 718, 994, 1045
Hpy99I CGWCG 4 cut(s) 298, 694, 1001, 1522
HpyAV CCTTC 3 cut(s) 334, 1045, 1353
HpyCH4III ACNGT 3 cut(s) 214, 472, 1230
HpyCH4V TGCA 7 cut(s) 162, 675, 909, 915, 1306, 1360, 1582
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 223, 556, 1115
HpyF3I CTNAG 4 cut(s) 255, 441, 610, 1419
Hsp92I GRCGYC 1 cut(s) 692
Hsp92II CATG 2 cut(s) 1102, 1339
Kpn2I TCCGGA 1 cut(s) 1237
Ksp22I TGATCA 1 cut(s) 1558
Kzo9I GATC 8 cut(s) 28, 452, 711, 796, 1016, 1318, 1466, 1558
LmnI GCTCC 4 cut(s) 605, 779, 906, 932
Lsp1109I GCAGC 2 cut(s) 687, 922
LweI GCATC 1 cut(s) 924
MaeI CTAG 5 cut(s) 371, 1089, 1250, 1295, 1347
MaeIII GTNAC 5 cut(s) 166, 749, 1370, 1439, 1503
MalI GATC 8 cut(s) 30, 454, 713, 798, 1018, 1320, 1468, 1560
MbiI CCGCTC 1 cut(s) 1289
MboI GATC 8 cut(s) 28, 452, 711, 796, 1016, 1318, 1466, 1558
MfeI CAATTG 1 cut(s) 1036
MhlI GDGCHC 1 cut(s) 1098
MluCI AATT 5 cut(s) 87, 189, 636, 829, 1036
MmeI TCCRAC 2 cut(s) 634, 713
MroI TCCGGA 1 cut(s) 1237
MroXI GAANNNNTTC 1 cut(s) 1208
MslI CAYNNNNRTG 1 cut(s) 23
MspR9I CCNGG 2 cut(s) 272, 500
MunI CAATTG 1 cut(s) 1036
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 4 cut(s) 53, 223, 556, 1115
NciI CCSGG 1 cut(s) 500
NdeII GATC 8 cut(s) 28, 452, 711, 796, 1016, 1318, 1466, 1558
NheI GCTAGC 1 cut(s) 1249
NlaIII CATG 2 cut(s) 1102, 1339
NlaIV GGNNCC 3 cut(s) 211, 607, 1341
NmuCI GTSAC 2 cut(s) 166, 1439
NspV TTCGAA 2 cut(s) 91, 1003
PcsI WCGNNNNNNNCGW 2 cut(s) 245, 431
PdmI GAANNNNTTC 1 cut(s) 1208
PfeI GAWTC 7 cut(s) 65, 422, 489, 614, 657, 940, 1312
PflFI GACNNNGTC 1 cut(s) 694
PinAI ACCGGT 6 cut(s) 230, 351, 361, 891, 1510, 1532
PkrI GCNGC 2 cut(s) 677, 937
PmaCI CACGTG 2 cut(s) 533, 578
PmlI CACGTG 2 cut(s) 533, 578
Ppu21I YACGTR 4 cut(s) 136, 343, 533, 578
PshBI ATTAAT 1 cut(s) 785
PsiI TTATAA 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 1098
Psp1406I AACGTT 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 270
PspCI CACGTG 2 cut(s) 533, 578
PspEI GGTNACC 1 cut(s) 1439
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 3 cut(s) 211, 607, 1341
PspPI GGNCC 2 cut(s) 501, 1145
PstI CTGCAG 1 cut(s) 677
PsyI GACNNNGTC 1 cut(s) 694
RsaI GTAC 3 cut(s) 878, 983, 1046
RsaNI GTAC 3 cut(s) 877, 982, 1045
RseI CAYNNNNRTG 1 cut(s) 23
SacI GAGCTC 1 cut(s) 1098
SatI GCNGC 2 cut(s) 676, 936
Sau3AI GATC 8 cut(s) 28, 452, 711, 796, 1016, 1318, 1466, 1558
Sau96I GGNCC 2 cut(s) 501, 1145
ScaI AGTACT 1 cut(s) 983
ScrFI CCNGG 2 cut(s) 272, 500
SduI GDGCHC 1 cut(s) 1098
SfaNI GCATC 1 cut(s) 924
SfcI CTRYAG 1 cut(s) 673
SfuI TTCGAA 2 cut(s) 91, 1003
SinI GGWCC 1 cut(s) 1145
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 5 cut(s) 87, 189, 636, 829, 1036
SsiI CCGC 7 cut(s) 47, 275, 777, 930, 955, 1289, 1490
SspMI CTAG 5 cut(s) 371, 1089, 1250, 1295, 1347
SstI GAGCTC 1 cut(s) 1098
StyD4I CCNGG 2 cut(s) 270, 498
StyI CCWWGG 1 cut(s) 1191
TaaI ACNGT 3 cut(s) 214, 472, 1230
TaqII GACCGA 2 cut(s) 1162, 1458
TasI AATT 5 cut(s) 87, 189, 636, 829, 1036
TatI WGTACW 1 cut(s) 981
TfiI GAWTC 7 cut(s) 65, 422, 489, 614, 657, 940, 1312
TseFI GTSAC 2 cut(s) 166, 1439
TseI GCWGC 2 cut(s) 675, 935
Tsp45I GTSAC 2 cut(s) 166, 1439
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 3 cut(s) 109, 869, 1535
Tth111I GACNNNGTC 1 cut(s) 694
VpaK11BI GGWCC 1 cut(s) 1145
VspI ATTAAT 1 cut(s) 785
XapI RAATTY 1 cut(s) 87
XbaI TCTAGA 2 cut(s) 1294, 1346
XmnI GAANNNNTTC 1 cut(s) 1208
XspI CTAG 5 cut(s) 371, 1089, 1250, 1295, 1347
ZrmI AGTACT 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.