Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0015371

Physical Location & Seq

Genomic Coordinates Forward (+)

22913225 .. 22914856

Gene Structure 1632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1157600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

ATGGATGCTGTTTCTGTTGATACTAGCAGTAATAGTAATAATAGTAGTAGCATAAACATGGACAAGGAGAGATTGACGGCGGAGATGGCGTTCAAGGACTCGTCCTCCGCCGTCATCAAAATCCGGGAGCGCCTGCCGGACTTCTTACAGTCTGTCAAGCTCAAGTACGTCAAGCTCGGCTATGGCTACACCGTTAACGCAGCCACCATTATTTTGTTCCTCCTCATTTTACCGCTCTTCGTCTCGGTATTAATCCAGCTCACTGGTCTGGAGCTGGAACGGATCACAGAGCTCTGGACCAACCAGGCTGTCCGGATCGAACGCATCGACGCCGCCACCAGGCTCGCCGGTTCAGGGGTCCTCCTCTTCTTCTTCGGTCTCTACTGGGCCAAGCGGTCTAGACCAGTTTATCTGGTCGACTTCTCATGCTACAAACCGGAAGACGAACGCAAAATGTCCGTTGAGTCGTTTCTAAAAATGACTGAAGAAAACGGCGCATTTGCTCCGGACACGGTTAACTTCCAGACCCGCATTTCGAACCGGTCCGGTCTAGGCGATGAGACGTACTTGCCGCGCGGAATCACCTCCAACCCGCCACAGCTGTCCATGGAGCAAGCCCGGTCCGAGGCCGAGTCGGTCATGTTCGGCGCCCTCGACTCACTCTTCAAAAAAACGGGAATCAAACCGAACCAAATCGACATCCTCATCGTGAACTGCAGCCTGTTCAACCCGACGCCGTCGCTGTCGTCCATGATCGTCAACCACTACAAGCTCAAAACCGACATTAAATCGTACAACCTGGGCGGCATGGGCTGCAGCGCCGGTCTGATCTCCATCGACCTCGCCAAGGACCTCCTCAAAGCAAATCCCAACTCCTACGCCGTCGTCGTCAGCACCGAAAACATAACCTTGAACTGGTACTTCGGAAACGACAAATCAATGCTCCTCTGCAACTGTATTTTCCGAATGGGCGGCGCCGCGGTTCTTCTATCGAACAGGAACCGCGACCTCGCCCGGTCCAAGTACGAGCTCGTACACACTGTCCGGACCCACAAGGGCGCTGACGACAGGAACTACAAGTGTGTTTACCAGCGAGAAGACGACAAAGGGACCGTCGGCGTTTCGCTTGCGCGTGAGCTCATGGCCGTGGCGGGCGACGCGTTGAAAACGAACATAACGACGCTGGGCCCACTCGTCCTGCCGTTTACCGAACAGGTGTTGTTTTTCATAACGCTGATTAGGAAGAAGGTTTTCAAGGCGAAGGTCAAACCGTACATTCCGGACTTCAAGCTCGCGTTCGAGCACTTCTGCATACACGCGGGTGGACGCGCCGTCCTGGACGAGCTGGAGAAGAATCTTCAACTCACTGAGTGGCACATGGAGCCGTCTCGGATGACCTTGCACCGGTTCGGCAACACGTCGAGCAGTTCGCTGTGGTACGAGCTGTCGTACGCGGAGGCCAAGGGCCGGGTCGGGAGGGGTGACCGGGTTTGGCAGATTGCTTTCGGGTCGGGTTTTAAGTGTAATAGCGCGGTTTGGCGGGCCCTCCGGCCGATTTCTGTCGGGGACGGGTTGGGTAATCCGTGGATGGACTCAATTGATAAATACCCGGTCAAAGTCCCGATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009922 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0022626 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0050896 GO:0071704 GO:1901568 GO:1901570 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

544

Amino Acids

60.75

Weight (kDa)

9.01

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	129 - 417	8.9e-142	FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C	PF08541	434 - 514	3.6e-11	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C	PF02797	436 - 514	2.8e-08	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01120
fragaria_vesca	FvH4_7g17440
malus_domestica	MD01G1087400.v1.1 MD07G1157600.v1.1
prunus_persica	Prupe.2G196000_v2.0.a1
pyrus_communis	pycom01g11140 pycom07g15410
rosa_chinensis	RchiOBHm_Chr1g0360891
rosa_laevigata	RLG00000027773 RLG00000027775
rosa_multiflora	Rmu_sc0000677.1_g000044
rosa_rugosa	Rorug01G0282900
rosa_samantha	Rh1AG294400 Rh1BG259400 Rh1DG289400
rosa_wichuraiana	Rw1G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	647, 974
AccBSI	CCGCTC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	417
AccIII	TCCGGA	4 cut(s)	312, 505, 1044, 1279
AclWI	GGATC	2 cut(s)	290, 323
AcoI	YGGCCR	2 cut(s)	1143, 1550
AcuI	CTGAAG	1 cut(s)	504
AcyI	GRCGYC	4 cut(s)	330, 648, 734, 975
AdeI	CACNNNGTG	1 cut(s)	1371
AfaI	GTAC	9 cut(s)	167, 566, 794, 920, 1025, 1035, 1274, 1439, 1451
AfiI	CCNNNNNNNGG	7 cut(s)	339, 354, 625, 847, 915, 1404, 1467
AflIII	ACRYGT	2 cut(s)	1158, 1416
AgeI	ACCGGT	2 cut(s)	540, 1404
AgsI	TTSAA	8 cut(s)	94, 667, 727, 913, 1165, 1255, 1288, 1361
AhdI	GACNNNNNGTC	1 cut(s)	1331
AjiI	CACGTC	1 cut(s)	1419
AjnI	CCWGG	4 cut(s)	303, 338, 798, 1335
AleI	CACNNNNGTG	1 cut(s)	1320
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
Alw21I	GWGCWC	4 cut(s)	294, 1032, 1140, 1305
Alw26I	GTCTC	4 cut(s)	247, 383, 554, 1392
AlwI	GGATC	2 cut(s)	290, 323
Aor13HI	TCCGGA	4 cut(s)	312, 505, 1044, 1279
AoxI	GGCC	8 cut(s)	387, 627, 1143, 1186, 1458, 1465, 1542, 1550
ApaI	GGGCCC	2 cut(s)	1190, 1546
ApeKI	GCWGC	4 cut(s)	200, 717, 813, 816
ArsI	GACNNNNNNTTYG	4 cut(s)	517, 549, 1098, 1130
AseI	ATTAAT	1 cut(s)	251
AsiGI	ACCGGT	2 cut(s)	540, 1404
Asp700I	GAANNNNTTC	1 cut(s)	1250
AsuC2I	CCSGG	6 cut(s)	125, 619, 1015, 1469, 1487, 1610
AsuHPI	GGTGA	2 cut(s)	574, 1493
AsuII	TTCGAA	1 cut(s)	536
AvaII	GGWCC	8 cut(s)	297, 358, 543, 621, 850, 1017, 1047, 1110
BaeGI	GKGCMC	2 cut(s)	1190, 1546
BanI	GGYRCC	2 cut(s)	647, 974
BanII	GRGCYC	5 cut(s)	294, 1032, 1140, 1190, 1546
BbsI	GAAGAC	2 cut(s)	447, 1104
Bbv12I	GWGCWC	4 cut(s)	294, 1032, 1140, 1305
BbvI	GCAGC	4 cut(s)	212, 729, 800, 828
BccI	CCATC	4 cut(s)	79, 842, 1582, 1618
BceAI	ACGGC	9 cut(s)	93, 95, 508, 721, 866, 1130, 1186, 1316, 1369
BciT130I	CCWGG	4 cut(s)	305, 340, 800, 1337
BcnI	CCSGG	6 cut(s)	125, 619, 1015, 1469, 1487, 1610
BcoDI	GTCTC	4 cut(s)	247, 383, 554, 1392
BfaI	CTAG	3 cut(s)	24, 399, 551
BfmI	CTRYAG	2 cut(s)	715, 814
BfoI	RGCGCY	5 cut(s)	133, 651, 822, 978, 1062
BisI	GCNGC	9 cut(s)	201, 333, 572, 718, 805, 814, 817, 973, 978
BlsI	GCNGC	9 cut(s)	202, 334, 573, 719, 806, 815, 818, 974, 979
Bme18I	GGWCC	8 cut(s)	297, 358, 543, 621, 850, 1017, 1047, 1110
BmeRI	GACNNNNNGTC	1 cut(s)	1331
BmgBI	CACGTC	1 cut(s)	1419
BmiI	GGNNCC	9 cut(s)	359, 649, 976, 1001, 1049, 1111, 1188, 1383, 1544
BmrI	ACTGGG	1 cut(s)	394
BmsI	GCATC	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	394
BpiI	GAAGAC	2 cut(s)	447, 1104
BpmI	CTGGAG	2 cut(s)	290, 1367
Bpu14I	TTCGAA	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	146
BpuMI	CCSGG	6 cut(s)	125, 619, 1015, 1469, 1487, 1610
BsaBI	GATNNNNATC	1 cut(s)	833
BsaHI	GRCGYC	4 cut(s)	330, 648, 734, 975
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	8 cut(s)	606, 624, 799, 846, 978, 1146, 1461, 1583
BsaWI	WCCGGW	8 cut(s)	312, 436, 505, 540, 545, 1044, 1279, 1404
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 89, 104, 119
Bsc4I	CCNNNNNNNGG	7 cut(s)	339, 354, 625, 847, 915, 1404, 1467
Bse118I	RCCGGY	4 cut(s)	347, 540, 821, 1404
Bse1I	ACTGG	4 cut(s)	268, 389, 404, 920
Bse8I	GATNNNNATC	1 cut(s)	833
BseAI	TCCGGA	4 cut(s)	312, 505, 1044, 1279
BseBI	CCWGG	4 cut(s)	305, 340, 800, 1337
BseDI	CCNNGG	8 cut(s)	606, 624, 799, 846, 978, 1146, 1461, 1583
BseGI	GGATG	4 cut(s)	10, 699, 1398, 1593
BseJI	GATNNNNATC	1 cut(s)	833
BseLI	CCNNNNNNNGG	7 cut(s)	339, 354, 625, 847, 915, 1404, 1467
BseMII	CTCAG	1 cut(s)	1359
BseNI	ACTGG	4 cut(s)	268, 389, 404, 920
BseRI	GAGGAG	4 cut(s)	212, 353, 845, 935
BseSI	GKGCMC	2 cut(s)	1190, 1546
BseX3I	CGGCCG	1 cut(s)	1550
BseXI	GCAGC	4 cut(s)	212, 729, 800, 828
BseYI	CCCAGC	1 cut(s)	1183
Bsh1285I	CGRYCG	1 cut(s)	1553
BshFI	GGCC	8 cut(s)	389, 629, 1145, 1188, 1460, 1467, 1544, 1552
BshNI	GGYRCC	2 cut(s)	647, 974
BshTI	ACCGGT	2 cut(s)	540, 1404
BsiEI	CGRYCG	1 cut(s)	1553
BsiHKAI	GWGCWC	4 cut(s)	294, 1032, 1140, 1305
BsiWI	CGTACG	1 cut(s)	1449
BslFI	GGGAC	3 cut(s)	1123, 1580, 1604
BslI	CCNNNNNNNGG	7 cut(s)	339, 354, 625, 847, 915, 1404, 1467
BsmAI	GTCTC	4 cut(s)	247, 383, 554, 1392
BsmBI	CGTCTC	3 cut(s)	247, 554, 1392
BsmFI	GGGAC	3 cut(s)	1123, 1580, 1604
BsnI	GGCC	8 cut(s)	389, 629, 1145, 1188, 1460, 1467, 1544, 1552
Bso31I	GGTCTC	1 cut(s)	383
Bsp119I	TTCGAA	1 cut(s)	536
Bsp120I	GGGCCC	2 cut(s)	1186, 1542
Bsp1286I	GDGCHC	6 cut(s)	294, 1032, 1140, 1190, 1305, 1546
Bsp13I	TCCGGA	4 cut(s)	312, 505, 1044, 1279
Bsp143I	GATC	4 cut(s)	282, 315, 753, 828
Bsp19I	CCATGG	1 cut(s)	606
BspANI	GGCC	8 cut(s)	389, 629, 1145, 1188, 1460, 1467, 1544, 1552
BspCNI	CTCAG	1 cut(s)	1360
BspEI	TCCGGA	4 cut(s)	312, 505, 1044, 1279
BspLI	GGNNCC	9 cut(s)	359, 649, 976, 1001, 1049, 1111, 1188, 1383, 1544
BspMAI	CTGCAG	2 cut(s)	719, 818
BspPI	GGATC	2 cut(s)	290, 323
BspQI	GCTCTTC	1 cut(s)	242
BspT104I	TTCGAA	1 cut(s)	536
BspT107I	GGYRCC	2 cut(s)	647, 974
BspTNI	GGTCTC	1 cut(s)	383
BsrBI	CCGCTC	1 cut(s)	235
BsrFI	RCCGGY	4 cut(s)	347, 540, 821, 1404
BsrI	ACTGG	4 cut(s)	268, 389, 404, 920
BssAI	RCCGGY	4 cut(s)	347, 540, 821, 1404
BssECI	CCNNGG	8 cut(s)	606, 624, 799, 846, 978, 1146, 1461, 1583
BssMI	GATC	4 cut(s)	282, 315, 753, 828
BssNI	GRCGYC	4 cut(s)	330, 648, 734, 975
BssT1I	CCWWGG	3 cut(s)	606, 846, 1461
Bst2UI	CCWGG	4 cut(s)	305, 340, 800, 1337
Bst4CI	ACNGT	7 cut(s)	150, 193, 514, 956, 1042, 1114, 1272
Bst6I	CTCTTC	3 cut(s)	242, 371, 668
BstACI	GRCGYC	4 cut(s)	330, 648, 734, 975
BstAPI	GCANNNNNTGC	1 cut(s)	813
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	7 cut(s)	134, 345, 615, 1128, 1153, 1293, 1542
BstDEI	CTNAG	2 cut(s)	1368, 1629
BstDSI	CCRYGG	4 cut(s)	606, 978, 1146, 1583
BstEII	GGTNACC	1 cut(s)	1481
BstENI	CCTNNNNNAGG	1 cut(s)	845
BstF5I	GGATG	4 cut(s)	10, 699, 1398, 1593
BstH2I	RGCGCY	5 cut(s)	133, 651, 822, 978, 1062
BstKTI	GATC	4 cut(s)	285, 318, 756, 831
BstMAI	GTCTC	4 cut(s)	247, 383, 554, 1392
BstMBI	GATC	4 cut(s)	282, 315, 753, 828
BstMCI	CGRYCG	1 cut(s)	1553
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 810, 813, 1157, 1381
BstNI	CCWGG	4 cut(s)	305, 340, 800, 1337
BstPI	GGTNACC	1 cut(s)	1481
BstSFI	CTRYAG	2 cut(s)	715, 814
BstSLI	GKGCMC	2 cut(s)	1190, 1546
BstV1I	GCAGC	4 cut(s)	212, 729, 800, 828
BstV2I	GAAGAC	2 cut(s)	447, 1104
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstZI	CGGCCG	1 cut(s)	1550
BsuRI	GGCC	8 cut(s)	389, 629, 1145, 1188, 1460, 1467, 1544, 1552
BtgI	CCRYGG	4 cut(s)	606, 978, 1146, 1583
BtgZI	GCGATG	1 cut(s)	570
BtrI	CACGTC	1 cut(s)	1419
BtsCI	GGATG	4 cut(s)	10, 699, 1398, 1593
BtsIMutI	CAGTG	3 cut(s)	261, 1038, 1365
Cac8I	GCNNGC	7 cut(s)	134, 345, 615, 1128, 1153, 1293, 1542
Cfr10I	RCCGGY	4 cut(s)	347, 540, 821, 1404
Cfr42I	CCGCGG	1 cut(s)	981
CpoI	CGGWCCG	2 cut(s)	543, 621
CseI	GACGC	5 cut(s)	338, 742, 1166, 1189, 1335
Csp6I	GTAC	9 cut(s)	166, 565, 793, 919, 1024, 1034, 1273, 1438, 1450
CspAI	ACCGGT	2 cut(s)	540, 1404
CspI	CGGWCCG	2 cut(s)	543, 621
CviAII	CATG	8 cut(s)	58, 426, 607, 640, 751, 808, 1141, 1378
CviQI	GTAC	9 cut(s)	166, 565, 793, 919, 1024, 1034, 1273, 1438, 1450
DdeI	CTNAG	2 cut(s)	1368, 1629
DinI	GGCGCC	2 cut(s)	649, 976
DpnI	GATC	4 cut(s)	284, 317, 755, 830
DpnII	GATC	4 cut(s)	282, 315, 753, 828
DraIII	CACNNNGTG	1 cut(s)	1371
DriI	GACNNNNNGTC	1 cut(s)	1331
EaeI	YGGCCR	2 cut(s)	1143, 1550
EagI	CGGCCG	1 cut(s)	1550
Eam1104I	CTCTTC	3 cut(s)	242, 371, 668
Eam1105I	GACNNNNNGTC	1 cut(s)	1331
EarI	CTCTTC	3 cut(s)	242, 371, 668
EciI	GGCGGA	2 cut(s)	95, 97
Ecl136II	GAGCTC	3 cut(s)	292, 1030, 1138
EclXI	CGGCCG	1 cut(s)	1550
Eco130I	CCWWGG	3 cut(s)	606, 846, 1461
Eco24I	GRGCYC	5 cut(s)	294, 1032, 1140, 1190, 1546
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	8 cut(s)	297, 358, 543, 621, 850, 1017, 1047, 1110
Eco52I	CGGCCG	1 cut(s)	1550
Eco53kI	GAGCTC	3 cut(s)	292, 1030, 1138
Eco57I	CTGAAG	1 cut(s)	504
Eco91I	GGTNACC	1 cut(s)	1481
EcoICRI	GAGCTC	3 cut(s)	292, 1030, 1138
EcoNI	CCTNNNNNAGG	1 cut(s)	845
EcoO109I	RGGNCCY	3 cut(s)	358, 850, 1543
EcoO65I	GGTNACC	1 cut(s)	1481
EcoRII	CCWGG	4 cut(s)	303, 338, 798, 1335
EcoT14I	CCWWGG	3 cut(s)	606, 846, 1461
EcoT38I	GRGCYC	5 cut(s)	294, 1032, 1140, 1190, 1546
EgeI	GGCGCC	2 cut(s)	649, 976
EheI	GGCGCC	2 cut(s)	649, 976
ErhI	CCWWGG	3 cut(s)	606, 846, 1461
Esp3I	CGTCTC	3 cut(s)	247, 554, 1392
FaeI	CATG	8 cut(s)	61, 429, 610, 643, 754, 811, 1144, 1381
FaqI	GGGAC	3 cut(s)	1123, 1580, 1604
FatI	CATG	8 cut(s)	57, 425, 606, 639, 750, 807, 1140, 1377
FauI	CCCGC	5 cut(s)	536, 600, 1144, 1312, 1533
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	9 cut(s)	201, 333, 572, 718, 805, 814, 817, 973, 978
FokI	GGATG	4 cut(s)	17, 686, 1405, 1600
FriOI	GRGCYC	5 cut(s)	294, 1032, 1140, 1190, 1546
Fsp4HI	GCNGC	9 cut(s)	201, 333, 572, 718, 805, 814, 817, 973, 978
FspBI	CTAG	3 cut(s)	24, 399, 551
GluI	GCNGC	9 cut(s)	201, 333, 572, 718, 805, 814, 817, 973, 978
GsaI	CCCAGC	1 cut(s)	1187
GsuI	CTGGAG	2 cut(s)	290, 1367
HaeII	RGCGCY	5 cut(s)	133, 651, 822, 978, 1062
HaeIII	GGCC	8 cut(s)	389, 629, 1145, 1188, 1460, 1467, 1544, 1552
HgaI	GACGC	5 cut(s)	338, 742, 1166, 1189, 1335
Hin1I	GRCGYC	4 cut(s)	330, 648, 734, 975
Hin1II	CATG	8 cut(s)	61, 429, 610, 643, 754, 811, 1144, 1381
HincII	GTYRAC	4 cut(s)	196, 418, 517, 760
HindII	GTYRAC	4 cut(s)	196, 418, 517, 760
HinfI	GANTC	8 cut(s)	98, 464, 579, 632, 656, 678, 1354, 1592
HpaI	GTTAAC	2 cut(s)	196, 517
HphI	GGTGA	2 cut(s)	574, 1493
Hpy166II	GTNNAC	9 cut(s)	196, 418, 517, 712, 760, 1036, 1087, 1206, 1325
Hpy188I	TCNGA	5 cut(s)	625, 828, 926, 965, 1392
Hpy8I	GTNNAC	9 cut(s)	196, 418, 517, 712, 760, 1036, 1087, 1206, 1325
Hpy99I	CGWCG	9 cut(s)	332, 736, 742, 887, 890, 1118, 1160, 1183, 1423
HpyAV	CCTTC	2 cut(s)	1240, 1255
HpyCH4III	ACNGT	7 cut(s)	150, 193, 514, 956, 1042, 1114, 1272
HpyCH4IV	ACGT	3 cut(s)	168, 563, 1418
HpyCH4V	TGCA	5 cut(s)	717, 816, 951, 1311, 1402
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 810, 813, 1157, 1381
HpyF3I	CTNAG	2 cut(s)	1368, 1629
HpySE526I	ACGT	3 cut(s)	168, 563, 1418
Hsp92I	GRCGYC	4 cut(s)	330, 648, 734, 975
Hsp92II	CATG	8 cut(s)	61, 429, 610, 643, 754, 811, 1144, 1381
KasI	GGCGCC	2 cut(s)	647, 974
Kpn2I	TCCGGA	4 cut(s)	312, 505, 1044, 1279
KspAI	GTTAAC	2 cut(s)	196, 517
KspI	CCGCGG	1 cut(s)	981
Kzo9I	GATC	4 cut(s)	282, 315, 753, 828
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	6 cut(s)	127, 271, 508, 610, 948, 1381
Lsp1109I	GCAGC	4 cut(s)	212, 729, 800, 828
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	3 cut(s)	24, 399, 551
MaeII	ACGT	3 cut(s)	168, 563, 1418
MaeIII	GTNAC	1 cut(s)	1481
MalI	GATC	4 cut(s)	284, 317, 755, 830
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	4 cut(s)	282, 315, 753, 828
MfeI	CAATTG	1 cut(s)	1596
MhlI	GDGCHC	6 cut(s)	294, 1032, 1140, 1190, 1305, 1546
MluCI	AATT	1 cut(s)	1596
MluI	ACGCGT	1 cut(s)	1158
Mly113I	GGCGCC	2 cut(s)	648, 975
MlyI	GAGTC	5 cut(s)	92, 473, 641, 650, 1586
MmeI	TCCRAC	1 cut(s)	612
MroI	TCCGGA	4 cut(s)	312, 505, 1044, 1279
MroXI	GAANNNNTTC	1 cut(s)	1250
MseI	TTAA	5 cut(s)	195, 251, 516, 786, 1518
MslI	CAYNNNNRTG	3 cut(s)	56, 1145, 1320
MspA1I	CMGCKG	2 cut(s)	601, 980
MunI	CAATTG	1 cut(s)	1596
MvaI	CCWGG	4 cut(s)	305, 340, 800, 1337
MwoI	GCNNNNNNNGC	5 cut(s)	86, 810, 813, 1157, 1381
NarI	GGCGCC	2 cut(s)	648, 975
NciI	CCSGG	6 cut(s)	125, 619, 1015, 1469, 1487, 1610
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	4 cut(s)	282, 315, 753, 828
NlaIII	CATG	8 cut(s)	61, 429, 610, 643, 754, 811, 1144, 1381
NlaIV	GGNNCC	9 cut(s)	359, 649, 976, 1001, 1049, 1111, 1188, 1383, 1544
NmeAIII	GCCGAG	2 cut(s)	156, 655
NmuCI	GTSAC	1 cut(s)	1481
NspV	TTCGAA	1 cut(s)	536
OliI	CACNNNNGTG	1 cut(s)	1320
PciSI	GCTCTTC	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	5 cut(s)	324, 651, 885, 894, 1175
PdmI	GAANNNNTTC	1 cut(s)	1250
PfeI	GAWTC	3 cut(s)	579, 678, 1354
Pfl23II	CGTACG	1 cut(s)	1449
PflFI	GACNNNGTC	1 cut(s)	736
PfoI	TCCNGGA	2 cut(s)	123, 1335
PinAI	ACCGGT	2 cut(s)	540, 1404
PkrI	GCNGC	9 cut(s)	202, 334, 573, 719, 806, 815, 818, 974, 979
PleI	GAGTC	5 cut(s)	92, 472, 640, 650, 1586
PluTI	GGCGCC	2 cut(s)	651, 978
PpsI	GAGTC	5 cut(s)	92, 472, 640, 650, 1586
PpuMI	RGGWCCY	2 cut(s)	358, 850
PshBI	ATTAAT	1 cut(s)	251
Psp124BI	GAGCTC	3 cut(s)	294, 1032, 1140
Psp5II	RGGWCCY	2 cut(s)	358, 850
Psp6I	CCWGG	4 cut(s)	303, 338, 798, 1335
PspEI	GGTNACC	1 cut(s)	1481
PspFI	CCCAGC	1 cut(s)	1183
PspGI	CCWGG	4 cut(s)	303, 338, 798, 1335
PspLI	CGTACG	1 cut(s)	1449
PspN4I	GGNNCC	9 cut(s)	359, 649, 976, 1001, 1049, 1111, 1188, 1383, 1544
PspOMI	GGGCCC	2 cut(s)	1186, 1542
PspPPI	RGGWCCY	2 cut(s)	358, 850
PstI	CTGCAG	2 cut(s)	719, 818
PsyI	GACNNNGTC	1 cut(s)	736
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	9 cut(s)	167, 566, 794, 920, 1025, 1035, 1274, 1439, 1451
RsaNI	GTAC	9 cut(s)	166, 565, 793, 919, 1024, 1034, 1273, 1438, 1450
RseI	CAYNNNNRTG	3 cut(s)	56, 1145, 1320
Rsr2I	CGGWCCG	2 cut(s)	543, 621
RsrII	CGGWCCG	2 cut(s)	543, 621
SacI	GAGCTC	3 cut(s)	294, 1032, 1140
SacII	CCGCGG	1 cut(s)	981
SalI	GTCGAC	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	5 cut(s)	195, 251, 516, 786, 1518
SatI	GCNGC	9 cut(s)	201, 333, 572, 718, 805, 814, 817, 973, 978
Sau3AI	GATC	4 cut(s)	282, 315, 753, 828
SchI	GAGTC	5 cut(s)	92, 473, 641, 650, 1586
SduI	GDGCHC	6 cut(s)	294, 1032, 1140, 1190, 1305, 1546
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	2 cut(s)	715, 814
SfoI	GGCGCC	2 cut(s)	649, 976
Sfr303I	CCGCGG	1 cut(s)	981
SfuI	TTCGAA	1 cut(s)	536
SgrBI	CCGCGG	1 cut(s)	981
SinI	GGWCC	8 cut(s)	297, 358, 543, 621, 850, 1017, 1047, 1110
SmiMI	CAYNNNNRTG	3 cut(s)	56, 1145, 1320
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	1596
SspDI	GGCGCC	2 cut(s)	647, 974
SspMI	CTAG	3 cut(s)	24, 399, 551
SstI	GAGCTC	3 cut(s)	294, 1032, 1140
StyI	CCWWGG	3 cut(s)	606, 846, 1461
TaaI	ACNGT	7 cut(s)	150, 193, 514, 956, 1042, 1114, 1272
TaiI	ACGT	3 cut(s)	171, 566, 1421
TaqII	GACCGA	2 cut(s)	365, 625
TasI	AATT	1 cut(s)	1596
TauI	GCSGC	5 cut(s)	335, 574, 807, 975, 980
TfiI	GAWTC	3 cut(s)	579, 678, 1354
Tru1I	TTAA	5 cut(s)	195, 251, 516, 786, 1518
Tru9I	TTAA	5 cut(s)	195, 251, 516, 786, 1518
TscAI	CASTG	3 cut(s)	268, 1045, 1372
TseFI	GTSAC	1 cut(s)	1481
TseI	GCWGC	4 cut(s)	200, 717, 813, 816
Tsp45I	GTSAC	1 cut(s)	1481
TspDTI	ATGAA	1 cut(s)	1216
TspGWI	ACGGA	3 cut(s)	295, 448, 1572
TspRI	CASTG	3 cut(s)	268, 1045, 1372
Tth111I	GACNNNGTC	1 cut(s)	736
VpaK11BI	GGWCC	8 cut(s)	297, 358, 543, 621, 850, 1017, 1047, 1110
VspI	ATTAAT	1 cut(s)	251
XagI	CCTNNNNNAGG	1 cut(s)	845
XbaI	TCTAGA	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	417
XmnI	GAANNNNTTC	1 cut(s)	1250
XspI	CTAG	3 cut(s)	24, 399, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.