AT1G01260
BHLH Family

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
108946 .. 111699
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01260.1

Sequence Viewer

Length: 1773 bp
ATGAATATTGGTCGCCTAGTGTGGAACGAGGACGATAAAGCGATTGTTGCGTCATTACTGGGCAAACGAGCTCTCGATTACTTGCTTTCCAACTCTGTTTCCAATGCTAATCTCTTGATGACTCTAGGAAGCGACGAGAATCTGCAGAACAAGCTCTCGGATCTCGTCGAGAGACCCAACGCTTCTAATTTCTCTTGGAACTACGCCATTTTCTGGCAGATTTCCAGGTCAAAGGCCGGAGATTTGGTTCTCTGTTGGGGCGATGGATATTGCAGAGAGCCTAAAGAAGGAGAGAAATCAGAGATCGTTAGGATTCTAAGTATGGGAAGAGAAGAAGAAACGCATCAGACTATGAGAAAGAGAGTATTGCAAAAGCTTCATGATTTGTTTGGTGGCTCAGAAGAAGAGAACTGTGCTTTAGGACTAGATAGAGTTACTGACACTGAGATGTTTCTTCTTTCTTCTATGTATTTCTCATTCCCTCGAGGTGAAGGTGGTCCAGGCAAGTGTTTTGCCTCTGCTAAACCTGTTTGGTTATCCGATGTCGTCAATTCGGGTTCTGATTATTGCGTTAGATCGTTTCTTGCTAAATCTGCTGGCATTCAGACTGTTGTTTTGGTTCCTACTGATCTTGGTGTTGTTGAGTTAGGCTCAACTTCATGTTTGCCTGAAAGTGAAGACTCAATCTTGTCTATAAGATCATTGTTTACCAGTAGTTTGCCTCCGGTTAGAGCTGTTGCTTTACCTGTTACTGTAGCTGAAAAGATTGATGATAACAGAACGAAGATATTCGGCAAGGATTTGCACAATTCAGGGTTTCTTCAACATCATCAGCATCACCAACAACAACAACAACAACCACCGCAACAGCAACAGCATAGACAGTTTAGAGAGAAACTCACGGTTAGAAAAATGGATGATAGAGCTCCCAAGAGATTAGATGCTTATCCGAATAATGGGAACAGGTTTATGTTTTCGAACCCAGGCACCAACAACAACACTCTTCTGAGTCCTACTTGGGTTCAACCTGAGAACTACACGAGGCCAATCAACGTGAAGGAAGTTCCAAGCACGGATGAGTTCAAGTTTTTACCTTTGCAGCAATCATCGCAGAGGCTGCTTCCTCCTGCTCAAATGCAGATAGATTTCTCTGCTGCGAGTTCAAGGGCTTCAGAGAATAATTCAGATGGAGAAGGAGGAGGGGAATGGGCAGATGCAGTGGGTGCTGATGAATCTGGTAACAACAGACCAAGAAAACGCGGAAGGAGACCTGCCAACGGAAGAGCGGAAGCTTTGAACCATGTAGAAGCAGAGAGGCAGAGGCGTGAGAAGCTTAACCAGAGGTTTTACGCTCTGAGATCCGTTGTTCCCAACATATCCAAGATGGACAAAGCGTCCTTGTTGGGAGACGCGGTTTCTTATATAAACGAGCTTCACGCGAAGCTAAAGGTCATGGAAGCAGAGAGAGAGAGGTTAGGGTATAGCTCAAATCCACCTATCAGCTTGGATTCAGATATAAATGTTCAAACCTCAGGTGAAGATGTCACAGTGAGGATAAACTGTCCGTTGGAGTCTCATCCGGCTTCCAGAATCTTCCATGCGTTTGAAGAGAGTAAAGTAGAAGTGATAAACTCGAACCTGGAAGTTTCTCAGGACACAGTGTTGCATACGTTTGTAGTCAAATCTGAAGAATTAACGAAAGAGAAGCTGATATCGGCCTTGTCTAGAGAGCAAACAAATTCAGTTCAGTCAAGAACATCATCAGGTAGATAG

Protein Analysis

590

Amino Acids

66.0

Weight (kDa)

6.28

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 48 - 236 8e-54 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 433 - 479 4.5e-12 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 505 - 570 2.1e-07 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011863)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 483
Acc36I ACCTGC 1 cut(s) 1279
AccB1I GGYRCC 1 cut(s) 986
AccB7I CCANNNNNTGG 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 1286
AccII CGCG 3 cut(s) 1260, 1412, 1439
AciI CCGC 4 cut(s) 863, 1260, 1286, 1412
AclWI GGATC 2 cut(s) 168, 1353
AcsI RAATTY 1 cut(s) 1738
AcuI CTGAAG 2 cut(s) 1155, 1707
AfiI CCNNNNNNNGG 4 cut(s) 213, 287, 956, 1277
AgsI TTSAA 7 cut(s) 824, 1025, 1084, 1164, 1297, 1526, 1607
AhdI GACNNNNNGTC 1 cut(s) 1393
AjnI CCWGG 4 cut(s) 224, 499, 982, 1638
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
Alw21I GWGCWC 2 cut(s) 73, 928
Alw26I GTCTC 4 cut(s) 166, 1261, 1401, 1578
AlwI GGATC 2 cut(s) 168, 1353
AlwNI CAGNNNCTG 1 cut(s) 1117
Ama87I CYCGRG 1 cut(s) 483
AoxI GGCC 3 cut(s) 234, 1043, 1716
ApeKI GCWGC 3 cut(s) 1099, 1117, 1154
ApoI RAATTY 1 cut(s) 1738
ArsI GACNNNNNNTTYG 2 cut(s) 598, 630
Asp700I GAANNNNTTC 1 cut(s) 788
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 3 cut(s) 500, 830, 1547
AsuII TTCGAA 1 cut(s) 977
AvaI CYCGRG 1 cut(s) 483
AvaII GGWCC 1 cut(s) 497
AxyI CCTNAGG 1 cut(s) 1531
BanI GGYRCC 1 cut(s) 986
BanII GRGCYC 2 cut(s) 73, 928
BauI CACGAG 1 cut(s) 1039
BbsI GAAGAC 1 cut(s) 684
Bbv12I GWGCWC 2 cut(s) 73, 928
BbvI GCAGC 3 cut(s) 1104, 1111, 1141
BccI CCATC 3 cut(s) 257, 1181, 1378
BciT130I CCWGG 4 cut(s) 226, 501, 984, 1640
BcoDI GTCTC 4 cut(s) 166, 1261, 1401, 1578
BfaI CTAG 4 cut(s) 17, 125, 425, 1725
BfmI CTRYAG 2 cut(s) 143, 753
BfuAI ACCTGC 1 cut(s) 1279
BisI GCNGC 3 cut(s) 1100, 1118, 1155
BlsI GCNGC 3 cut(s) 1101, 1119, 1156
Bme1390I CCNGG 4 cut(s) 226, 501, 984, 1640
Bme18I GGWCC 1 cut(s) 497
BmeRI GACNNNNNGTC 1 cut(s) 1393
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 2 cut(s) 621, 988
BmrFI CCNGG 4 cut(s) 226, 501, 984, 1640
BmrI ACTGGG 1 cut(s) 68
BmsI GCATC 4 cut(s) 352, 844, 931, 1204
BmuI ACTGGG 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 684
BplI GAGNNNNNCTC 4 cut(s) 635, 667, 882, 914
Bpu14I TTCGAA 1 cut(s) 977
BsaBI GATNNNNATC 1 cut(s) 945
BsaI GGTCTC 2 cut(s) 166, 1261
BsaJI CCNNGG 1 cut(s) 982
BsaWI WCCGGW 1 cut(s) 724
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 1398, 1428
Bsc4I CCNNNNNNNGG 4 cut(s) 213, 287, 956, 1277
Bse1I ACTGG 2 cut(s) 63, 711
Bse21I CCTNAGG 1 cut(s) 1531
Bse8I GATNNNNATC 1 cut(s) 945
BseBI CCWGG 4 cut(s) 226, 501, 984, 1640
BseDI CCNNGG 1 cut(s) 982
BseGI GGATG 3 cut(s) 922, 1081, 1576
BseJI GATNNNNATC 1 cut(s) 945
BseLI CCNNNNNNNGG 4 cut(s) 213, 287, 956, 1277
BseMII CTCAG 7 cut(s) 411, 435, 998, 1020, 1346, 1545, 1664
BseNI ACTGG 2 cut(s) 63, 711
BseRI GAGGAG 1 cut(s) 1212
BseXI GCAGC 3 cut(s) 1104, 1111, 1141
Bsh1236I CGCG 3 cut(s) 1260, 1412, 1439
BshFI GGCC 3 cut(s) 236, 1045, 1718
BshNI GGYRCC 1 cut(s) 986
BsiHKAI GWGCWC 2 cut(s) 73, 928
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 3 cut(s) 237, 725, 1580
BslI CCNNNNNNNGG 4 cut(s) 213, 287, 956, 1277
BsmAI GTCTC 4 cut(s) 166, 1261, 1401, 1578
BsmBI CGTCTC 1 cut(s) 1401
BsmI GAATGC 1 cut(s) 600
BsnI GGCC 3 cut(s) 236, 1045, 1718
Bso31I GGTCTC 2 cut(s) 166, 1261
BsoBI CYCGRG 1 cut(s) 483
Bsp119I TTCGAA 1 cut(s) 977
Bsp1286I GDGCHC 2 cut(s) 73, 928
Bsp143I GATC 6 cut(s) 160, 303, 575, 628, 698, 1358
BspACI CCGC 4 cut(s) 863, 1260, 1286, 1412
BspANI GGCC 3 cut(s) 236, 1045, 1718
BspCNI CTCAG 7 cut(s) 410, 436, 999, 1021, 1347, 1544, 1663
BspFNI CGCG 3 cut(s) 1260, 1412, 1439
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 621, 988
BspMAI CTGCAG 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 1279
BspPI GGATC 2 cut(s) 168, 1353
BspQI GCTCTTC 1 cut(s) 1276
BspT104I TTCGAA 1 cut(s) 977
BspT107I GGYRCC 1 cut(s) 986
BspTNI GGTCTC 2 cut(s) 166, 1261
BsrBI CCGCTC 1 cut(s) 1286
BsrI ACTGG 2 cut(s) 63, 711
BssECI CCNNGG 1 cut(s) 982
BssMI GATC 6 cut(s) 160, 303, 575, 628, 698, 1358
BssSI CACGAG 1 cut(s) 1039
Bst2BI CACGAG 1 cut(s) 1039
Bst2UI CCWGG 4 cut(s) 226, 501, 984, 1640
Bst4CI ACNGT 8 cut(s) 413, 610, 754, 885, 904, 1549, 1562, 1660
Bst6I CTCTTC 5 cut(s) 322, 399, 1008, 1276, 1602
BstAPI GCANNNNNTGC 2 cut(s) 1117, 1223
BstBI TTCGAA 1 cut(s) 977
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 8 cut(s) 317, 397, 444, 1007, 1029, 1355, 1531, 1650
BstENI CCTNNNNNAGG 1 cut(s) 285
BstF5I GGATG 3 cut(s) 922, 1081, 1576
BstFNI CGCG 3 cut(s) 1260, 1412, 1439
BstKTI GATC 6 cut(s) 163, 306, 578, 631, 701, 1361
BstMAI GTCTC 4 cut(s) 166, 1261, 1401, 1578
BstMBI GATC 6 cut(s) 160, 303, 575, 628, 698, 1358
BstMWI GCNNNNNNNGC 7 cut(s) 47, 151, 593, 1108, 1117, 1223, 1330
BstNI CCWGG 4 cut(s) 226, 501, 984, 1640
BstSCI CCNGG 4 cut(s) 224, 499, 982, 1638
BstSFI CTRYAG 2 cut(s) 143, 753
BstUI CGCG 3 cut(s) 1260, 1412, 1439
BstV1I GCAGC 3 cut(s) 1104, 1111, 1141
BstV2I GAAGAC 1 cut(s) 684
BstX2I RGATCY 2 cut(s) 160, 1358
BstYI RGATCY 2 cut(s) 160, 1358
Bsu36I CCTNAGG 1 cut(s) 1531
BsuRI GGCC 3 cut(s) 236, 1045, 1718
BtgZI GCGATG 2 cut(s) 276, 1092
BtsCI GGATG 3 cut(s) 922, 1081, 1576
BtsI GCAGTG 1 cut(s) 1224
BtsIMutI CAGTG 4 cut(s) 441, 1224, 1554, 1665
BveI ACCTGC 1 cut(s) 1279
Cac8I GCNNGC 1 cut(s) 598
CaiI CAGNNNCTG 1 cut(s) 1117
CciI TCATGA 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 497
CseI GACGC 3 cut(s) 39, 1383, 1418
CviAII CATG 5 cut(s) 380, 660, 1301, 1453, 1598
DdeI CTNAG 8 cut(s) 317, 397, 444, 1007, 1029, 1355, 1531, 1650
DpnI GATC 6 cut(s) 162, 305, 577, 630, 700, 1360
DpnII GATC 6 cut(s) 160, 303, 575, 628, 698, 1358
DriI GACNNNNNGTC 1 cut(s) 1393
Eam1104I CTCTTC 5 cut(s) 322, 399, 1008, 1276, 1602
Eam1105I GACNNNNNGTC 1 cut(s) 1393
EarI CTCTTC 5 cut(s) 322, 399, 1008, 1276, 1602
Ecl136II GAGCTC 2 cut(s) 71, 926
Eco24I GRGCYC 2 cut(s) 73, 928
Eco31I GGTCTC 2 cut(s) 166, 1261
Eco32I GATATC 1 cut(s) 1713
Eco47I GGWCC 1 cut(s) 497
Eco53kI GAGCTC 2 cut(s) 71, 926
Eco57I CTGAAG 2 cut(s) 1155, 1707
Eco81I CCTNAGG 1 cut(s) 1531
Eco88I CYCGRG 1 cut(s) 483
EcoICRI GAGCTC 2 cut(s) 71, 926
EcoNI CCTNNNNNAGG 1 cut(s) 285
EcoRII CCWGG 4 cut(s) 224, 499, 982, 1638
EcoRV GATATC 1 cut(s) 1713
EcoT38I GRGCYC 2 cut(s) 73, 928
Esp3I CGTCTC 1 cut(s) 1401
FaeI CATG 5 cut(s) 383, 663, 1304, 1456, 1601
FatI CATG 5 cut(s) 379, 659, 1300, 1452, 1597
Fnu4HI GCNGC 3 cut(s) 1100, 1118, 1155
FokI GGATG 3 cut(s) 929, 1088, 1563
FriOI GRGCYC 2 cut(s) 73, 928
Fsp4HI GCNGC 3 cut(s) 1100, 1118, 1155
FspBI CTAG 4 cut(s) 17, 125, 425, 1725
GluI GCNGC 3 cut(s) 1100, 1118, 1155
HaeIII GGCC 3 cut(s) 236, 1045, 1718
HapII CCGG 3 cut(s) 237, 725, 1580
HgaI GACGC 3 cut(s) 39, 1383, 1418
Hin1II CATG 5 cut(s) 383, 663, 1304, 1456, 1601
HindIII AAGCTT 3 cut(s) 374, 1290, 1331
HinfI GANTC 9 cut(s) 121, 139, 313, 680, 1009, 1232, 1508, 1571, 1590
HpaII CCGG 3 cut(s) 237, 725, 1580
HphI GGTGA 3 cut(s) 500, 830, 1547
Hpy166II GTNNAC 1 cut(s) 708
Hpy188III TCNNGA 8 cut(s) 74, 115, 169, 380, 1587, 1652, 1725, 1752
Hpy8I GTNNAC 1 cut(s) 708
Hpy99I CGWCG 2 cut(s) 137, 170
HpyAV CCTTC 5 cut(s) 281, 485, 1051, 1187, 1257
HpyCH4III ACNGT 8 cut(s) 413, 610, 754, 885, 904, 1549, 1562, 1660
HpyCH4IV ACGT 2 cut(s) 1053, 1670
HpyCH4V TGCA 8 cut(s) 145, 273, 370, 805, 1099, 1138, 1217, 1666
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 151, 593, 1108, 1117, 1223, 1330
HpyF3I CTNAG 8 cut(s) 317, 397, 444, 1007, 1029, 1355, 1531, 1650
HpySE526I ACGT 2 cut(s) 1053, 1670
Hsp92II CATG 5 cut(s) 383, 663, 1304, 1456, 1601
Kzo9I GATC 6 cut(s) 160, 303, 575, 628, 698, 1358
LguI GCTCTTC 1 cut(s) 1276
LmnI GCTCC 1 cut(s) 931
Lsp1109I GCAGC 3 cut(s) 1104, 1111, 1141
LweI GCATC 4 cut(s) 352, 844, 931, 1204
MaeI CTAG 4 cut(s) 17, 125, 425, 1725
MaeII ACGT 2 cut(s) 1053, 1670
MaeIII GTNAC 4 cut(s) 433, 748, 1238, 1543
MalI GATC 6 cut(s) 162, 305, 577, 630, 700, 1360
MbiI CCGCTC 1 cut(s) 1286
MboI GATC 6 cut(s) 160, 303, 575, 628, 698, 1358
MflI RGATCY 2 cut(s) 160, 1358
MhlI GDGCHC 2 cut(s) 73, 928
MluCI AATT 6 cut(s) 187, 550, 808, 1180, 1691, 1738
MlyI GAGTC 4 cut(s) 115, 674, 1018, 1580
MmeI TCCRAC 2 cut(s) 114, 1548
MroXI GAANNNNTTC 1 cut(s) 788
MseI TTAA 2 cut(s) 1335, 1694
MslI CAYNNNNRTG 1 cut(s) 446
MspI CCGG 3 cut(s) 237, 725, 1580
MspR9I CCNGG 4 cut(s) 226, 501, 984, 1640
Mva1269I GAATGC 1 cut(s) 600
MvaI CCWGG 4 cut(s) 226, 501, 984, 1640
MvnI CGCG 3 cut(s) 1260, 1412, 1439
MwoI GCNNNNNNNGC 7 cut(s) 47, 151, 593, 1108, 1117, 1223, 1330
NdeII GATC 6 cut(s) 160, 303, 575, 628, 698, 1358
NlaIII CATG 5 cut(s) 383, 663, 1304, 1456, 1601
NlaIV GGNNCC 2 cut(s) 621, 988
NmuCI GTSAC 1 cut(s) 1543
NspV TTCGAA 1 cut(s) 977
PaeR7I CTCGAG 1 cut(s) 483
PagI TCATGA 1 cut(s) 379
PciSI GCTCTTC 1 cut(s) 1276
PctI GAATGC 1 cut(s) 600
PdmI GAANNNNTTC 1 cut(s) 788
PfeI GAWTC 5 cut(s) 139, 313, 1232, 1508, 1590
PflMI CCANNNNNTGG 1 cut(s) 213
PkrI GCNGC 3 cut(s) 1101, 1119, 1156
PleI GAGTC 4 cut(s) 115, 674, 1017, 1579
PpsI GAGTC 4 cut(s) 115, 674, 1017, 1579
Psp124BI GAGCTC 2 cut(s) 73, 928
Psp6I CCWGG 4 cut(s) 224, 499, 982, 1638
PspGI CCWGG 4 cut(s) 224, 499, 982, 1638
PspN4I GGNNCC 2 cut(s) 621, 988
PspPI GGNCC 1 cut(s) 497
PspXI VCTCGAGB 1 cut(s) 483
PstI CTGCAG 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 1117
PsuI RGATCY 2 cut(s) 160, 1358
RseI CAYNNNNRTG 1 cut(s) 446
SacI GAGCTC 2 cut(s) 73, 928
SapI GCTCTTC 1 cut(s) 1276
SaqAI TTAA 2 cut(s) 1335, 1694
SatI GCNGC 3 cut(s) 1100, 1118, 1155
Sau3AI GATC 6 cut(s) 160, 303, 575, 628, 698, 1358
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 4 cut(s) 115, 674, 1018, 1580
ScrFI CCNGG 4 cut(s) 226, 501, 984, 1640
SduI GDGCHC 2 cut(s) 73, 928
SfaNI GCATC 4 cut(s) 352, 844, 931, 1204
SfcI CTRYAG 2 cut(s) 143, 753
Sfr274I CTCGAG 1 cut(s) 483
SfuI TTCGAA 1 cut(s) 977
SinI GGWCC 1 cut(s) 497
SlaI CTCGAG 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
Sse9I AATT 6 cut(s) 187, 550, 808, 1180, 1691, 1738
SsiI CCGC 4 cut(s) 863, 1260, 1286, 1412
SspI AATATT 1 cut(s) 7
SspMI CTAG 4 cut(s) 17, 125, 425, 1725
SstI GAGCTC 2 cut(s) 73, 928
StyD4I CCNGG 4 cut(s) 224, 499, 982, 1638
TaaI ACNGT 8 cut(s) 413, 610, 754, 885, 904, 1549, 1562, 1660
TaiI ACGT 2 cut(s) 1056, 1673
TaqI TCGA 5 cut(s) 75, 168, 484, 977, 1634
TasI AATT 6 cut(s) 187, 550, 808, 1180, 1691, 1738
TfiI GAWTC 5 cut(s) 139, 313, 1232, 1508, 1590
Tru1I TTAA 2 cut(s) 1335, 1694
Tru9I TTAA 2 cut(s) 1335, 1694
TscAI CASTG 4 cut(s) 448, 1224, 1554, 1665
TseFI GTSAC 1 cut(s) 1543
TseI GCWGC 3 cut(s) 1099, 1117, 1154
Tsp45I GTSAC 1 cut(s) 1543
TspDTI ATGAA 4 cut(s) 17, 368, 648, 1245
TspGWI ACGGA 4 cut(s) 1088, 1293, 1351, 1554
TspRI CASTG 4 cut(s) 448, 1224, 1554, 1665
Van91I CCANNNNNTGG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 497
XagI CCTNNNNNAGG 1 cut(s) 285
XapI RAATTY 1 cut(s) 1738
XbaI TCTAGA 1 cut(s) 1724
XhoI CTCGAG 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 788
XspI CTAG 4 cut(s) 17, 125, 425, 1725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.