Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000368.1

Orthogroup ID

OG0011863

Physical Location & Seq

Genomic Coordinates Reverse (-)

74792 .. 77245

Gene Structure 2454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000368.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

atggcgtccttgtgcccaagactgttcctttattgccttatctatttgctccctcatgatcccattgcagaaactgagatgaagatggagatgggtttaggtggtggggtttggaaagatgaagataaggccatggtggctgcggttttaggcactcgggctttcgattacttgatttcgagctctgtttcttcgaatgagaattcatgcatgggcatagggaccgatgagagcttgcacagcaagctttcagatcttgtggagcctccaaacgcttccaatttcagctggaactatgcgattttctggcaaatttcgaggtccaattctggggattgggttctgtgttggggggatgggtcttgtagggagcccaaggaaggtgaagattctgaagcttcgagaattctaagtctcaggctcgaggatgagaccgagcagaccatgaggaagatagtgctgcagaagttgcacactttgtttgggagctcagatgagtataatggtgctcttgggttggaccgagttacagatacagagatgttgttccttgcatccatgtatttttcgtttcccagaggggaaggtggcccgggcaagtgcttggcatccggcaagcaggtgtggctctcggacttgttgaagtcagggtcggattattgtgtcagatcgtttctggctaggtctgctggaatccagaccattgttttagtcccaacagatgttggtgtggttgaactgggttcagtaagatgtatacctgagaatttggaaatgttgcagtcgataaggttattattttccacacaggcctcactgacaagggctaagccaatggcagccttgccagtaatgagcaacaagagagatgagattgctgcacagcaaaatcatttaagcactgtggagagaggaggggaaggagttcccaagatttttggccaagatttgaactcggggaacccagggcgcactcggtacagggagaaacttgctgttaggaaggtggaagagaggccgtgggatgcctattccaacgggaacaggattgcgttttctagtcctcaaaacggaattcatggttcaagttgggggcagagtcatgttggtgtgaaacaagggagtccggctggggtttatgcttctcaaggtcctgtgaataatttgcaggagcttgccaacggaggcagggatgattttcggctcggaacaggattgcgttttctagtcctcaaaacggaattcatggagcttgccaacggaggcagggatgattttcggcttaagccctatcaaccgcaaaagcaggcgcctatgcaaattgacttttccggggctacttcaaggccttcggtggtttcccgacccattgttgttgaatctgagaattcagatgctgaagctccatgcaaggaagagctgccaggtacagctgaagagaggaggccacggaaacggggtaggaagccagcaaatggaagagaagagcccctcaatcatgttgaagcagaaaggcagcgtcgggagaagctgaaccagcgcttctatgctttacgagctgttgtgccaaacatatccaagatggacaaagcatctttgttgggagatgccattgattatatcaatgagcttcaggcaaagctgaaggttatggaatctgagagggagagtgtaggaggtgcttcaagagatacctcagctttggtagctaacccaagttcagaaaatcagatccgggctccccatgttgacattcaagctgtgcatgatgaggttgttgtaagcgtgagctgccctttagattcacaccctgcatccagaatcatccaagcatttaaagaagcacaaatcagtgttattgagtcgaaattcaccgcagcaaacgattctgtgtttcatacatttgttgtcaagtctgaaggatctgaacaattgacgaaggagaagttgattgcagcattttccagggaatccaactccttacaatcattgtcatcagttggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009892 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

668

Amino Acids

73.43

Weight (kDa)

5.83

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01260 AT1G01260 AT1G01260
fragaria_vesca	FvH4_7g16800
malus_domestica	MD01G1082700.v1.1 MD07G1151000.v1.1
prunus_persica	Prupe.2G190100_v2.0.a1 Prupe.2G190100_v2.0.a1
pyrus_communis	pycom07g14930
rosa_chinensis	RchiOBHm_Chr1g0360001
rosa_laevigata	RLG00000027841
rosa_multiflora	Rmu_ssc0000368.1_g000016
rosa_roxburghii	Rroxscaffold_4G00296560
rosa_rugosa	Rorug01G0274500
rosa_samantha	Rh1AG288300 Rh1BG253800 Rh1CG271300 Rh1DG282900
rosa_wichuraiana	Rw1G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	610
Acc36I	ACCTGC	1 cut(s)	610
AccB1I	GGYRCC	1 cut(s)	1309
AccB7I	CCANNNNNTGG	1 cut(s)	1475
AccI	GTMKAC	1 cut(s)	757
AciI	CCGC	3 cut(s)	143, 1298, 1875
AclWI	GGATC	3 cut(s)	53, 1726, 1930
AcoI	YGGCCR	1 cut(s)	940
AcsI	RAATTY	8 cut(s)	202, 312, 405, 766, 1074, 1241, 1387, 1868
AcuI	CTGAAG	6 cut(s)	414, 1419, 1455, 1616, 1664, 1938
AcyI	GRCGYC	2 cut(s)	5, 1310
AfaI	GTAC	2 cut(s)	980, 1429
AfeI	AGCGCT	1 cut(s)	1541
AfiI	CCNNNNNNNGG	5 cut(s)	330, 380, 1070, 1237, 1475
AflII	CTTAAG	1 cut(s)	1283
AgsI	TTSAA	9 cut(s)	643, 737, 952, 1086, 1344, 1379, 1505, 1686, 1757
AjnI	CCWGG	3 cut(s)	964, 1423, 1964
Alw21I	GWGCWC	3 cut(s)	185, 491, 511
Alw26I	GTCTC	2 cut(s)	419, 425
AlwI	GGATC	3 cut(s)	53, 1726, 1930
AlwNI	CAGNNNCTG	2 cut(s)	74, 1397
Ama87I	CYCGRG	4 cut(s)	156, 422, 592, 955
Aor51HI	AGCGCT	1 cut(s)	1541
AoxI	GGCC	7 cut(s)	129, 589, 810, 940, 1016, 1346, 1445
ApeKI	GCWGC	9 cut(s)	140, 460, 839, 878, 1420, 1516, 1791, 1877, 1955
ApoI	RAATTY	8 cut(s)	202, 312, 405, 766, 1074, 1241, 1387, 1868
Asp700I	GAANNNNTTC	1 cut(s)	924
AspLEI	GCGC	3 cut(s)	972, 1312, 1542
AspS9I	GGNCC	5 cut(s)	222, 321, 520, 590, 1151
AsuC2I	CCSGG	4 cut(s)	593, 594, 1333, 1736
AsuHPI	GGTGA	2 cut(s)	395, 1864
AsuII	TTCGAA	1 cut(s)	194
AvaI	CYCGRG	4 cut(s)	156, 422, 592, 955
AvaII	GGWCC	4 cut(s)	222, 321, 520, 1151
BaeGI	GKGCMC	1 cut(s)	17
BalI	TGGCCA	1 cut(s)	942
BanI	GGYRCC	1 cut(s)	1309
BanII	GRGCYC	5 cut(s)	185, 375, 491, 1491, 1741
Bbv12I	GWGCWC	3 cut(s)	185, 491, 511
BbvCI	CCTCAGC	1 cut(s)	1696
BbvI	GCAGC	9 cut(s)	127, 447, 851, 865, 1407, 1528, 1778, 1889, 1967
BccI	CCATC	4 cut(s)	79, 85, 350, 1576
BceAI	ACGGC	1 cut(s)	1003
BciT130I	CCWGG	3 cut(s)	966, 1425, 1966
BcnI	CCSGG	4 cut(s)	593, 594, 1333, 1736
BcoDI	GTCTC	2 cut(s)	419, 425
BfaI	CTAG	3 cut(s)	681, 1059, 1226
BfmI	CTRYAG	1 cut(s)	461
BfoI	RGCGCY	2 cut(s)	1313, 1543
BfrI	CTTAAG	1 cut(s)	1283
BfuAI	ACCTGC	1 cut(s)	610
BglI	GCCNNNNNGGC	1 cut(s)	137
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	9 cut(s)	141, 461, 840, 879, 1421, 1517, 1792, 1878, 1956
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	9 cut(s)	142, 462, 841, 880, 1422, 1518, 1793, 1879, 1957
Bme1390I	CCNGG	7 cut(s)	593, 594, 966, 1333, 1425, 1736, 1966
Bme18I	GGWCC	4 cut(s)	222, 321, 520, 1151
BmeT110I	CYCGRG	4 cut(s)	156, 422, 592, 955
BmgT120I	GGNCC	5 cut(s)	222, 321, 520, 590, 1151
BmiI	GGNNCC	6 cut(s)	223, 264, 372, 962, 1311, 1740
BmrFI	CCNGG	7 cut(s)	593, 594, 966, 1333, 1425, 1736, 1966
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	7 cut(s)	563, 617, 1015, 1384, 1597, 1601, 1823
BmuI	ACTGGG	1 cut(s)	749
Bpu10I	CCTNAGC	1 cut(s)	1696
Bpu1102I	GCTNAGC	1 cut(s)	828
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	1131
BpuMI	CCSGG	4 cut(s)	593, 594, 1333, 1736
BsaHI	GRCGYC	2 cut(s)	5, 1310
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	9 cut(s)	132, 375, 592, 964, 965, 1019, 1332, 1448, 1965
Bsc4I	CCNNNNNNNGG	5 cut(s)	330, 380, 1070, 1237, 1475
Bse1I	ACTGG	2 cut(s)	744, 848
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	3 cut(s)	966, 1425, 1966
BseDI	CCNNGG	9 cut(s)	132, 375, 592, 964, 965, 1019, 1332, 1448, 1965
BseGI	GGATG	9 cut(s)	361, 433, 554, 608, 1030, 1198, 1276, 1814, 1824
BseLI	CCNNNNNNNGG	5 cut(s)	330, 380, 1070, 1237, 1475
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	7 cut(s)	66, 430, 504, 753, 1374, 1650, 1710
BseNI	ACTGG	2 cut(s)	744, 848
BseRI	GAGGAG	2 cut(s)	927, 1456
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	9 cut(s)	127, 447, 851, 865, 1407, 1528, 1778, 1889, 1967
BseYI	CCCAGC	1 cut(s)	1130
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	7 cut(s)	131, 591, 812, 942, 1018, 1348, 1447
BshNI	GGYRCC	1 cut(s)	1309
BsiHKAI	GWGCWC	3 cut(s)	185, 491, 511
BsiHKCI	CYCGRG	4 cut(s)	156, 422, 592, 955
BsiSI	CCGG	5 cut(s)	593, 612, 1127, 1332, 1735
BslFI	GGGAC	2 cut(s)	235, 698
BslI	CCNNNNNNNGG	5 cut(s)	330, 380, 1070, 1237, 1475
BsmAI	GTCTC	2 cut(s)	419, 425
BsmFI	GGGAC	2 cut(s)	235, 698
BsnI	GGCC	7 cut(s)	131, 591, 812, 942, 1018, 1348, 1447
Bso31I	GGTCTC	1 cut(s)	425
BsoBI	CYCGRG	4 cut(s)	156, 422, 592, 955
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	7 cut(s)	17, 185, 375, 491, 511, 1491, 1741
Bsp143I	GATC	5 cut(s)	58, 253, 668, 1731, 1922
Bsp1720I	GCTNAGC	1 cut(s)	828
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	3 cut(s)	143, 1298, 1875
BspANI	GGCC	7 cut(s)	131, 591, 812, 942, 1018, 1348, 1447
BspCNI	CTCAG	7 cut(s)	67, 429, 503, 754, 1375, 1651, 1709
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	6 cut(s)	223, 264, 372, 962, 1311, 1740
BspMAI	CTGCAG	1 cut(s)	465
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	3 cut(s)	53, 1726, 1930
BspQI	GCTCTTC	2 cut(s)	1410, 1479
BspT104I	TTCGAA	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	1309
BspTI	CTTAAG	1 cut(s)	1283
BspTNI	GGTCTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	744, 848
BssECI	CCNNGG	9 cut(s)	132, 375, 592, 964, 965, 1019, 1332, 1448, 1965
BssMI	GATC	5 cut(s)	58, 253, 668, 1731, 1922
BssNAI	GTATAC	1 cut(s)	758
BssNI	GRCGYC	2 cut(s)	5, 1310
BssT1I	CCWWGG	2 cut(s)	132, 375
Bst1107I	GTATAC	1 cut(s)	758
Bst2UI	CCWGG	3 cut(s)	966, 1425, 1966
Bst4CI	ACNGT	2 cut(s)	24, 904
Bst6I	CTCTTC	5 cut(s)	1005, 1410, 1431, 1474, 1479
BstACI	GRCGYC	2 cut(s)	5, 1310
BstAFI	CTTAAG	1 cut(s)	1283
BstAPI	GCANNNNNTGC	1 cut(s)	469
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	7 cut(s)	236, 245, 617, 1176, 1254, 1308, 1470
BstDEI	CTNAG	9 cut(s)	75, 410, 416, 490, 762, 828, 1383, 1659, 1696
BstDSI	CCRYGG	3 cut(s)	132, 1019, 1448
BstF5I	GGATG	9 cut(s)	361, 433, 554, 608, 1030, 1198, 1276, 1814, 1824
BstH2I	RGCGCY	2 cut(s)	1313, 1543
BstHHI	GCGC	3 cut(s)	972, 1312, 1542
BstKTI	GATC	5 cut(s)	61, 256, 671, 1734, 1925
BstMAI	GTCTC	2 cut(s)	419, 425
BstMBI	GATC	5 cut(s)	58, 253, 668, 1731, 1922
BstNI	CCWGG	3 cut(s)	966, 1425, 1966
BstSCI	CCNGG	7 cut(s)	591, 592, 964, 1331, 1423, 1734, 1964
BstSFI	CTRYAG	1 cut(s)	461
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	9 cut(s)	127, 447, 851, 865, 1407, 1528, 1778, 1889, 1967
BstX2I	RGATCY	3 cut(s)	253, 1731, 1922
BstYI	RGATCY	3 cut(s)	253, 1731, 1922
BstZ17I	GTATAC	1 cut(s)	758
BsuRI	GGCC	7 cut(s)	131, 591, 812, 942, 1018, 1348, 1447
BtgI	CCRYGG	3 cut(s)	132, 1019, 1448
BtsCI	GGATG	9 cut(s)	361, 433, 554, 608, 1030, 1198, 1276, 1814, 1824
BtsIMutI	CAGTG	3 cut(s)	815, 900, 1858
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	7 cut(s)	236, 245, 617, 1176, 1254, 1308, 1470
CaiI	CAGNNNCTG	2 cut(s)	74, 1397
CciI	TCATGA	1 cut(s)	55
CfoI	GCGC	3 cut(s)	972, 1312, 1542
Cfr13I	GGNCC	5 cut(s)	222, 321, 520, 590, 1151
Cfr9I	CCCGGG	1 cut(s)	592
CseI	GACGC	1 cut(s)	1508
Csp6I	GTAC	2 cut(s)	979, 1428
CviQI	GTAC	2 cut(s)	979, 1428
DdeI	CTNAG	9 cut(s)	75, 410, 416, 490, 762, 828, 1383, 1659, 1696
DinI	GGCGCC	1 cut(s)	1311
DpnI	GATC	5 cut(s)	60, 255, 670, 1733, 1924
DpnII	GATC	5 cut(s)	58, 253, 668, 1731, 1922
DraI	TTTAAA	1 cut(s)	1837
EaeI	YGGCCR	1 cut(s)	940
Eam1104I	CTCTTC	5 cut(s)	1005, 1410, 1431, 1474, 1479
EarI	CTCTTC	5 cut(s)	1005, 1410, 1431, 1474, 1479
Ecl136II	GAGCTC	2 cut(s)	183, 489
Eco130I	CCWWGG	2 cut(s)	132, 375
Eco147I	AGGCCT	2 cut(s)	812, 1348
Eco24I	GRGCYC	5 cut(s)	185, 375, 491, 1491, 1741
Eco31I	GGTCTC	1 cut(s)	425
Eco47I	GGWCC	4 cut(s)	222, 321, 520, 1151
Eco47III	AGCGCT	1 cut(s)	1541
Eco53kI	GAGCTC	2 cut(s)	183, 489
Eco57I	CTGAAG	6 cut(s)	414, 1419, 1455, 1616, 1664, 1938
Eco88I	CYCGRG	4 cut(s)	156, 422, 592, 955
EcoICRI	GAGCTC	2 cut(s)	183, 489
EcoO109I	RGGNCCY	1 cut(s)	1151
EcoRI	GAATTC	5 cut(s)	202, 405, 1074, 1241, 1387
EcoRII	CCWGG	3 cut(s)	964, 1423, 1964
EcoT14I	CCWWGG	2 cut(s)	132, 375
EcoT22I	ATGCAT	1 cut(s)	212
EcoT38I	GRGCYC	5 cut(s)	185, 375, 491, 1491, 1741
EgeI	GGCGCC	1 cut(s)	1311
EheI	GGCGCC	1 cut(s)	1311
ErhI	CCWWGG	2 cut(s)	132, 375
FaqI	GGGAC	2 cut(s)	235, 698
FblI	GTMKAC	1 cut(s)	757
Fnu4HI	GCNGC	9 cut(s)	141, 461, 840, 879, 1421, 1517, 1792, 1878, 1956
FokI	GGATG	9 cut(s)	368, 440, 541, 595, 1037, 1205, 1283, 1801, 1811
FriOI	GRGCYC	5 cut(s)	185, 375, 491, 1491, 1741
Fsp4HI	GCNGC	9 cut(s)	141, 461, 840, 879, 1421, 1517, 1792, 1878, 1956
FspBI	CTAG	3 cut(s)	681, 1059, 1226
GlaI	GCGC	3 cut(s)	971, 1311, 1541
GluI	GCNGC	9 cut(s)	141, 461, 840, 879, 1421, 1517, 1792, 1878, 1956
GsaI	CCCAGC	1 cut(s)	1134
HaeII	RGCGCY	2 cut(s)	1313, 1543
HaeIII	GGCC	7 cut(s)	131, 591, 812, 942, 1018, 1348, 1447
HapII	CCGG	5 cut(s)	593, 612, 1127, 1332, 1735
HgaI	GACGC	1 cut(s)	1508
HhaI	GCGC	3 cut(s)	972, 1312, 1542
Hin1I	GRCGYC	2 cut(s)	5, 1310
Hin6I	GCGC	3 cut(s)	970, 1310, 1540
HinP1I	GCGC	3 cut(s)	970, 1310, 1540
HincII	GTYRAC	1 cut(s)	1750
HindII	GTYRAC	1 cut(s)	1750
HindIII	AAGCTT	2 cut(s)	245, 396
HpaII	CCGG	5 cut(s)	593, 612, 1127, 1332, 1735
HphI	GGTGA	2 cut(s)	395, 1864
Hpy166II	GTNNAC	2 cut(s)	758, 1750
Hpy188III	TCNNGA	7 cut(s)	56, 402, 697, 1362, 1523, 1686, 1818
Hpy8I	GTNNAC	2 cut(s)	758, 1750
Hpy99I	CGWCG	1 cut(s)	1524
HpyAV	CCTTC	8 cut(s)	374, 578, 914, 997, 1359, 1639, 1913, 1933
HpyCH4III	ACNGT	2 cut(s)	24, 904
HpyF3I	CTNAG	9 cut(s)	75, 410, 416, 490, 762, 828, 1383, 1659, 1696
Hsp92I	GRCGYC	2 cut(s)	5, 1310
HspAI	GCGC	3 cut(s)	970, 1310, 1540
KasI	GGCGCC	1 cut(s)	1309
Kzo9I	GATC	5 cut(s)	58, 253, 668, 1731, 1922
LguI	GCTCTTC	2 cut(s)	1410, 1479
LmnI	GCTCC	8 cut(s)	54, 262, 370, 486, 1171, 1249, 1408, 1744
Lsp1109I	GCAGC	9 cut(s)	127, 447, 851, 865, 1407, 1528, 1778, 1889, 1967
LweI	GCATC	7 cut(s)	563, 617, 1015, 1384, 1597, 1601, 1823
MaeI	CTAG	3 cut(s)	681, 1059, 1226
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	5 cut(s)	60, 255, 670, 1733, 1924
MboI	GATC	5 cut(s)	58, 253, 668, 1731, 1922
MfeI	CAATTG	1 cut(s)	1931
MflI	RGATCY	3 cut(s)	253, 1731, 1922
MhlI	GDGCHC	7 cut(s)	17, 185, 375, 491, 511, 1491, 1741
MlsI	TGGCCA	1 cut(s)	942
MluNI	TGGCCA	1 cut(s)	942
Mly113I	GGCGCC	1 cut(s)	1310
MlyI	GAGTC	3 cut(s)	1108, 1132, 1871
MmeI	TCCRAC	4 cut(s)	498, 633, 1059, 1998
Mox20I	TGGCCA	1 cut(s)	942
Mph1103I	ATGCAT	1 cut(s)	212
MroXI	GAANNNNTTC	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	942
MseI	TTAA	3 cut(s)	896, 1284, 1836
MslI	CAYNNNNRTG	1 cut(s)	1107
Msp20I	TGGCCA	1 cut(s)	942
MspA1I	CMGCKG	2 cut(s)	288, 1433
MspCI	CTTAAG	1 cut(s)	1283
MspI	CCGG	5 cut(s)	593, 612, 1127, 1332, 1735
MspR9I	CCNGG	7 cut(s)	593, 594, 966, 1333, 1425, 1736, 1966
MunI	CAATTG	1 cut(s)	1931
MvaI	CCWGG	3 cut(s)	966, 1425, 1966
NarI	GGCGCC	1 cut(s)	1310
NciI	CCSGG	4 cut(s)	593, 594, 1333, 1736
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	5 cut(s)	58, 253, 668, 1731, 1922
NlaIV	GGNNCC	6 cut(s)	223, 264, 372, 962, 1311, 1740
NsiI	ATGCAT	1 cut(s)	212
NspV	TTCGAA	1 cut(s)	194
PaeR7I	CTCGAG	1 cut(s)	422
PagI	TCATGA	1 cut(s)	55
PaqCI	CACCTGC	1 cut(s)	610
PasI	CCCWGGG	1 cut(s)	965
PceI	AGGCCT	2 cut(s)	812, 1348
PciSI	GCTCTTC	2 cut(s)	1410, 1479
PdmI	GAANNNNTTC	1 cut(s)	924
PfeI	GAWTC	8 cut(s)	389, 693, 1379, 1655, 1802, 1821, 1886, 1970
PflMI	CCANNNNNTGG	1 cut(s)	1475
PkrI	GCNGC	9 cut(s)	142, 462, 841, 880, 1422, 1518, 1793, 1879, 1957
PleI	GAGTC	3 cut(s)	1107, 1131, 1870
PluTI	GGCGCC	1 cut(s)	1313
PpsI	GAGTC	3 cut(s)	1107, 1131, 1870
PpuMI	RGGWCCY	1 cut(s)	1151
Psp124BI	GAGCTC	2 cut(s)	185, 491
Psp5II	RGGWCCY	1 cut(s)	1151
Psp6I	CCWGG	3 cut(s)	964, 1423, 1964
PspFI	CCCAGC	1 cut(s)	1130
PspGI	CCWGG	3 cut(s)	964, 1423, 1964
PspN4I	GGNNCC	6 cut(s)	223, 264, 372, 962, 1311, 1740
PspPI	GGNCC	5 cut(s)	222, 321, 520, 590, 1151
PspPPI	RGGWCCY	1 cut(s)	1151
PspXI	VCTCGAGB	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	465
PstNI	CAGNNNCTG	2 cut(s)	74, 1397
PsuI	RGATCY	3 cut(s)	253, 1731, 1922
PvuII	CAGCTG	2 cut(s)	288, 1433
RsaI	GTAC	2 cut(s)	980, 1429
RsaNI	GTAC	2 cut(s)	979, 1428
RseI	CAYNNNNRTG	1 cut(s)	1107
SacI	GAGCTC	2 cut(s)	185, 491
SapI	GCTCTTC	2 cut(s)	1410, 1479
SaqAI	TTAA	3 cut(s)	896, 1284, 1836
SatI	GCNGC	9 cut(s)	141, 461, 840, 879, 1421, 1517, 1792, 1878, 1956
Sau3AI	GATC	5 cut(s)	58, 253, 668, 1731, 1922
Sau96I	GGNCC	5 cut(s)	222, 321, 520, 590, 1151
SchI	GAGTC	3 cut(s)	1108, 1132, 1871
ScrFI	CCNGG	7 cut(s)	593, 594, 966, 1333, 1425, 1736, 1966
SduI	GDGCHC	7 cut(s)	17, 185, 375, 491, 511, 1491, 1741
SfaNI	GCATC	7 cut(s)	563, 617, 1015, 1384, 1597, 1601, 1823
SfcI	CTRYAG	1 cut(s)	461
SfoI	GGCGCC	1 cut(s)	1311
Sfr274I	CTCGAG	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	4 cut(s)	222, 321, 520, 1151
SlaI	CTCGAG	1 cut(s)	422
SmaI	CCCGGG	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	1107
SmlI	CTYRAG	3 cut(s)	422, 1146, 1283
SmoI	CTYRAG	3 cut(s)	422, 1146, 1283
SrfI	GCCCGGGC	1 cut(s)	594
SseBI	AGGCCT	2 cut(s)	812, 1348
SsiI	CCGC	3 cut(s)	143, 1298, 1875
SspDI	GGCGCC	1 cut(s)	1309
SspMI	CTAG	3 cut(s)	681, 1059, 1226
SstI	GAGCTC	2 cut(s)	185, 491
StuI	AGGCCT	2 cut(s)	812, 1348
StyD4I	CCNGG	7 cut(s)	591, 592, 964, 1331, 1423, 1734, 1964
StyI	CCWWGG	2 cut(s)	132, 375
TaaI	ACNGT	2 cut(s)	24, 904
TaqI	TCGA	8 cut(s)	165, 179, 194, 317, 401, 423, 785, 1865
TaqII	GACCGA	3 cut(s)	239, 449, 537
TfiI	GAWTC	8 cut(s)	389, 693, 1379, 1655, 1802, 1821, 1886, 1970
Tru1I	TTAA	3 cut(s)	896, 1284, 1836
Tru9I	TTAA	3 cut(s)	896, 1284, 1836
TscAI	CASTG	3 cut(s)	822, 907, 1858
TseI	GCWGC	9 cut(s)	140, 460, 839, 878, 1420, 1516, 1791, 1877, 1955
TspDTI	ATGAA	6 cut(s)	95, 135, 195, 1067, 1234, 1886
TspGWI	ACGGA	5 cut(s)	1086, 1197, 1253, 1275, 1465
TspMI	CCCGGG	1 cut(s)	592
TspRI	CASTG	3 cut(s)	822, 907, 1858
Van91I	CCANNNNNTGG	1 cut(s)	1475
Vha464I	CTTAAG	1 cut(s)	1283
VpaK11BI	GGWCC	4 cut(s)	222, 321, 520, 1151
XapI	RAATTY	8 cut(s)	202, 312, 405, 766, 1074, 1241, 1387, 1868
XhoI	CTCGAG	1 cut(s)	422
XmaI	CCCGGG	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	757
XmnI	GAANNNNTTC	1 cut(s)	924
XspI	CTAG	3 cut(s)	681, 1059, 1226
Zsp2I	ATGCAT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.