Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011863

Physical Location & Seq

Genomic Coordinates Forward (+)

15894398 .. 15896682

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027841

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

ATGGCGTCCTTGTGCCCAAGACTGTTCCTTTATTGCCTTATCTATTTGCTTGCTCATGATCCCATTGCAGAAACTGAGATGAAGATGGAGATGGGTTTAGGTGGTGGGGTTTGGAAAGATGAAGATAAGGCCATGGTGGCTGCGGTTTTAGGCACTCGGGCTTTCGATTACTTGATTTCGAGCTCTGTTTCTTCGAATGAGAATTCATGCATGGGCATAGGGACCGATGAGAGCTTGCACAGCAAGCTTTCAGATCTTGTGGAGCCTCCAAACGCTTCGAATTTCAGCTGGAACTATGCGATTTTCTGGCAAATTTCGAGGTCCAATTCTGGGGATTGGGTTCTGTGTTGGGGGGATGGGTCTTGTAGGGAGCCCAAGGAAGGTGAAGATTCTGAAGCTTCGAGAATTCTAAGTCTCAGGCTCGAGGATGAGACCCAGCAGACCATGAGGAAGATAGTGCTGCAGAAGTTGCACACTTTGTTTGGGAGCTCAGATGAGTATAATGGTGCTCTTGGGTTGGACCGAGTTACAGATACAGAGATGTTGTTCCTTGCATCCATGTATTTTTCGTTTCCGAGAGGGGAAGGTGGCCCGGGCAAGTGCTTGGCATCCGGCAAGCCGGTGTGGCTCTCGGACTTGTTGAAGTCAGGGTCCGATTATTGTGTCAGATCGTTTCTGGCTAGGTCTGCTGGAATCCAGACCATTGTTTTAGTCCCAACAGATGTTGGTGTGGTTGAACTGGGTTCAGTAAGATGTATACCTGAGAATTTGGAAATGTTGCAGTCGATAAGGTTGTTATTTTCGACACAGGCCTCACTGACAAGGGCTAAGCCAATGGCAGCCTTGCCAGTAATGAGCAACAAGAGAGACGAGATTGCTGCACATCAAAATCATTTAAGCACTGTGGAGAGAGGAGGGGAAGGAGTTCCCAAGATTTTCGGCCAAGATTTGAACTCGGGGAACCCAGGGCGCACTCGGTACAGGGAGAAACTTGCTGTTAGGAAGGTGGAAGAGAGGCCATGGGATGCCTATTCCAACGGGAACAGGATTGCGTTTTCTAGTCCTCAAAATGGAATTCATGGTTCAAGTTGGGGGCAGAGTCATGTTGGTGTGAAACAAGGGAGTCCGGCTGGGGTTTATGCTTCTCAAGGACCTGTGAATAATTTGCAGGAGCTTGCCAACGGAGGCAGGGATGATTTTCGGCTCAAGCCCTATCAACCGCAAAAGCAGGCGCCTATGCAAATTGACTTTTCCGGGGCTACTTCAAGGCCTTCGGTGGTTTCCCGACCCATTGTTGTTGAATCTGAGAATTCAGATGCTGAAGCTCCATGCAAGGAAGAGCTGCCAGGCACAGCTGAAGAGAGGAGGCCACGGAAACGGGGTAGGAAGCCAGCAAATGGAAGAGAAGAGCCCCTCAATCATGTTGAAGCAGAAAGGCAGCGTCGGGAGAAGCTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCAAACATATCCAAGATGGACAAAGCATCTTTGTTAGGAGATGCCATTGATTATATCAATGAGCTTCAGGCAAAGCTTAAGGTCATGGAATCTGAGAGGGAGAGTGTAGGAGGCACTTCAAGAGATACCTCAGCTTTGGTAGCTAACCCAAGTTCAGAAAATCAGATCCGGGCTCCCCATGTTGACATTCAAGCTGTGCATGATGAGGTTGTTGTAAGCGTGAGCTGCCCTTTAGATTCACACCCTGCATCAAGAATCATCCAAGCATTTAAAGAAGTGCAAATCAGTGTTGTTGAGTCGAAATTCACCGCAGCAAACGATTCTGTGTTTCATACATTTGTTGTCAAGTCTCAAGGATCTGAACAATTGACGAAGGAGAAGTTGATTGCAGCATTTTCCAGGGAATCCAACTCCTTACAATCATTGTCATCAGTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009892 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

643

Amino Acids

70.48

Weight (kDa)

6.04

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	79 - 267	1.5e-51	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	473 - 519	8.6e-13	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	557 - 628	2.4e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01260 AT1G01260 AT1G01260
fragaria_vesca	FvH4_7g16800
malus_domestica	MD01G1082700.v1.1 MD07G1151000.v1.1
prunus_persica	Prupe.2G190100_v2.0.a1 Prupe.2G190100_v2.0.a1
pyrus_communis	pycom07g14930
rosa_chinensis	RchiOBHm_Chr1g0360001
rosa_laevigata	RLG00000027841
rosa_multiflora	Rmu_ssc0000368.1_g000016
rosa_roxburghii	Rroxscaffold_4G00296560
rosa_rugosa	Rorug01G0274500
rosa_samantha	Rh1AG288300 Rh1BG253800 Rh1CG271300 Rh1DG282900
rosa_wichuraiana	Rw1G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1231
AccB7I	CCANNNNNTGG	1 cut(s)	1397
AccI	GTMKAC	1 cut(s)	757
AciI	CCGC	4 cut(s)	143, 1220, 1462, 1797
AclWI	GGATC	3 cut(s)	53, 1648, 1852
AcoI	YGGCCR	1 cut(s)	940
AcsI	RAATTY	8 cut(s)	202, 280, 312, 405, 766, 1074, 1309, 1790
AcuI	CTGAAG	4 cut(s)	414, 1341, 1377, 1538
AcyI	GRCGYC	2 cut(s)	5, 1232
AfaI	GTAC	1 cut(s)	980
AfiI	CCNNNNNNNGG	4 cut(s)	330, 380, 1070, 1397
AflII	CTTAAG	1 cut(s)	1565
AgsI	TTSAA	9 cut(s)	643, 737, 952, 1086, 1266, 1301, 1427, 1608, 1679
AjnI	CCWGG	3 cut(s)	964, 1345, 1886
Alw21I	GWGCWC	3 cut(s)	185, 491, 511
Alw26I	GTCTC	4 cut(s)	419, 425, 861, 1842
AlwI	GGATC	3 cut(s)	53, 1648, 1852
AlwNI	CAGNNNCTG	2 cut(s)	74, 1319
Ama87I	CYCGRG	4 cut(s)	156, 422, 592, 955
AoxI	GGCC	7 cut(s)	129, 589, 810, 940, 1016, 1268, 1367
ApeKI	GCWGC	9 cut(s)	140, 460, 839, 878, 1342, 1438, 1713, 1799, 1877
ApoI	RAATTY	8 cut(s)	202, 280, 312, 405, 766, 1074, 1309, 1790
Asp700I	GAANNNNTTC	1 cut(s)	924
AspLEI	GCGC	2 cut(s)	972, 1234
AspS9I	GGNCC	6 cut(s)	222, 321, 520, 590, 651, 1151
AsuC2I	CCSGG	4 cut(s)	593, 594, 1255, 1658
AsuHPI	GGTGA	2 cut(s)	395, 1786
AsuII	TTCGAA	2 cut(s)	194, 278
AvaI	CYCGRG	4 cut(s)	156, 422, 592, 955
AvaII	GGWCC	5 cut(s)	222, 321, 520, 651, 1151
BaeGI	GKGCMC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	1231
BanII	GRGCYC	5 cut(s)	185, 375, 491, 1413, 1663
Bbv12I	GWGCWC	3 cut(s)	185, 491, 511
BbvCI	CCTCAGC	1 cut(s)	1618
BbvI	GCAGC	9 cut(s)	127, 447, 851, 865, 1329, 1450, 1700, 1811, 1889
BccI	CCATC	4 cut(s)	79, 85, 350, 1498
BcgI	CGANNNNNNTGC	2 cut(s)	860, 894
BciT130I	CCWGG	3 cut(s)	966, 1347, 1888
BcnI	CCSGG	4 cut(s)	593, 594, 1255, 1658
BcoDI	GTCTC	4 cut(s)	419, 425, 861, 1842
BfaI	CTAG	2 cut(s)	681, 1059
BfmI	CTRYAG	1 cut(s)	461
BfoI	RGCGCY	1 cut(s)	1235
BfrI	CTTAAG	1 cut(s)	1565
BglI	GCCNNNNNGGC	2 cut(s)	137, 625
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	9 cut(s)	141, 461, 840, 879, 1343, 1439, 1714, 1800, 1878
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	9 cut(s)	142, 462, 841, 880, 1344, 1440, 1715, 1801, 1879
Bme1390I	CCNGG	7 cut(s)	593, 594, 966, 1255, 1347, 1658, 1888
Bme18I	GGWCC	5 cut(s)	222, 321, 520, 651, 1151
BmeT110I	CYCGRG	4 cut(s)	156, 422, 592, 955
BmgT120I	GGNCC	6 cut(s)	222, 321, 520, 590, 651, 1151
BmiI	GGNNCC	7 cut(s)	223, 264, 372, 652, 962, 1233, 1662
BmrFI	CCNGG	7 cut(s)	593, 594, 966, 1255, 1347, 1658, 1888
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	7 cut(s)	563, 617, 1015, 1306, 1519, 1523, 1745
BmuI	ACTGGG	1 cut(s)	749
Bpu10I	CCTNAGC	1 cut(s)	1618
Bpu1102I	GCTNAGC	1 cut(s)	828
Bpu14I	TTCGAA	2 cut(s)	194, 278
BpuEI	CTTGAG	3 cut(s)	1131, 1190, 1824
BpuMI	CCSGG	4 cut(s)	593, 594, 1255, 1658
BsaHI	GRCGYC	2 cut(s)	5, 1232
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	9 cut(s)	132, 375, 592, 964, 965, 1019, 1254, 1370, 1887
Bsc4I	CCNNNNNNNGG	4 cut(s)	330, 380, 1070, 1397
Bse118I	RCCGGY	1 cut(s)	619
Bse1I	ACTGG	2 cut(s)	744, 848
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	3 cut(s)	966, 1347, 1888
BseDI	CCNNGG	9 cut(s)	132, 375, 592, 964, 965, 1019, 1254, 1370, 1887
BseGI	GGATG	7 cut(s)	361, 433, 554, 608, 1030, 1198, 1746
BseLI	CCNNNNNNNGG	4 cut(s)	330, 380, 1070, 1397
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	7 cut(s)	66, 430, 504, 753, 1296, 1572, 1632
BseNI	ACTGG	2 cut(s)	744, 848
BseRI	GAGGAG	2 cut(s)	927, 1378
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	9 cut(s)	127, 447, 851, 865, 1329, 1450, 1700, 1811, 1889
BseYI	CCCAGC	2 cut(s)	435, 1130
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	7 cut(s)	131, 591, 812, 942, 1018, 1270, 1369
BshNI	GGYRCC	1 cut(s)	1231
BsiHKAI	GWGCWC	3 cut(s)	185, 491, 511
BsiHKCI	CYCGRG	4 cut(s)	156, 422, 592, 955
BsiSI	CCGG	6 cut(s)	593, 612, 620, 1127, 1254, 1657
BslFI	GGGAC	2 cut(s)	235, 698
BslI	CCNNNNNNNGG	4 cut(s)	330, 380, 1070, 1397
BsmAI	GTCTC	4 cut(s)	419, 425, 861, 1842
BsmBI	CGTCTC	1 cut(s)	861
BsmFI	GGGAC	2 cut(s)	235, 698
BsnI	GGCC	7 cut(s)	131, 591, 812, 942, 1018, 1270, 1369
Bso31I	GGTCTC	1 cut(s)	425
BsoBI	CYCGRG	4 cut(s)	156, 422, 592, 955
Bsp119I	TTCGAA	2 cut(s)	194, 278
Bsp1286I	GDGCHC	7 cut(s)	17, 185, 375, 491, 511, 1413, 1663
Bsp143I	GATC	5 cut(s)	58, 253, 668, 1653, 1844
Bsp1720I	GCTNAGC	1 cut(s)	828
Bsp19I	CCATGG	2 cut(s)	132, 1019
BspACI	CCGC	4 cut(s)	143, 1220, 1462, 1797
BspANI	GGCC	7 cut(s)	131, 591, 812, 942, 1018, 1270, 1369
BspCNI	CTCAG	7 cut(s)	67, 429, 503, 754, 1297, 1573, 1631
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	7 cut(s)	223, 264, 372, 652, 962, 1233, 1662
BspMAI	CTGCAG	1 cut(s)	465
BspPI	GGATC	3 cut(s)	53, 1648, 1852
BspQI	GCTCTTC	2 cut(s)	1332, 1401
BspT104I	TTCGAA	2 cut(s)	194, 278
BspT107I	GGYRCC	1 cut(s)	1231
BspTI	CTTAAG	1 cut(s)	1565
BspTNI	GGTCTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	619
BsrI	ACTGG	2 cut(s)	744, 848
BssAI	RCCGGY	1 cut(s)	619
BssECI	CCNNGG	9 cut(s)	132, 375, 592, 964, 965, 1019, 1254, 1370, 1887
BssMI	GATC	5 cut(s)	58, 253, 668, 1653, 1844
BssNAI	GTATAC	1 cut(s)	758
BssNI	GRCGYC	2 cut(s)	5, 1232
BssT1I	CCWWGG	3 cut(s)	132, 375, 1019
Bst1107I	GTATAC	1 cut(s)	758
Bst2UI	CCWGG	3 cut(s)	966, 1347, 1888
Bst4CI	ACNGT	2 cut(s)	24, 904
Bst6I	CTCTTC	5 cut(s)	1005, 1332, 1353, 1396, 1401
BstACI	GRCGYC	2 cut(s)	5, 1232
BstAFI	CTTAAG	1 cut(s)	1565
BstAPI	GCANNNNNTGC	1 cut(s)	469
BstBI	TTCGAA	2 cut(s)	194, 278
BstC8I	GCNNGC	7 cut(s)	51, 236, 245, 617, 1176, 1230, 1392
BstDEI	CTNAG	9 cut(s)	75, 410, 416, 490, 762, 828, 1305, 1581, 1618
BstDSI	CCRYGG	3 cut(s)	132, 1019, 1370
BstF5I	GGATG	7 cut(s)	361, 433, 554, 608, 1030, 1198, 1746
BstH2I	RGCGCY	1 cut(s)	1235
BstHHI	GCGC	2 cut(s)	972, 1234
BstKTI	GATC	5 cut(s)	61, 256, 671, 1656, 1847
BstMAI	GTCTC	4 cut(s)	419, 425, 861, 1842
BstMBI	GATC	5 cut(s)	58, 253, 668, 1653, 1844
BstNI	CCWGG	3 cut(s)	966, 1347, 1888
BstSCI	CCNGG	7 cut(s)	591, 592, 964, 1253, 1345, 1656, 1886
BstSFI	CTRYAG	1 cut(s)	461
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	9 cut(s)	127, 447, 851, 865, 1329, 1450, 1700, 1811, 1889
BstX2I	RGATCY	3 cut(s)	253, 1653, 1844
BstYI	RGATCY	3 cut(s)	253, 1653, 1844
BstZ17I	GTATAC	1 cut(s)	758
BsuRI	GGCC	7 cut(s)	131, 591, 812, 942, 1018, 1270, 1369
BtgI	CCRYGG	3 cut(s)	132, 1019, 1370
BtsCI	GGATG	7 cut(s)	361, 433, 554, 608, 1030, 1198, 1746
BtsIMutI	CAGTG	3 cut(s)	815, 900, 1780
Cac8I	GCNNGC	7 cut(s)	51, 236, 245, 617, 1176, 1230, 1392
CaiI	CAGNNNCTG	2 cut(s)	74, 1319
CciI	TCATGA	1 cut(s)	55
CfoI	GCGC	2 cut(s)	972, 1234
Cfr10I	RCCGGY	1 cut(s)	619
Cfr13I	GGNCC	6 cut(s)	222, 321, 520, 590, 651, 1151
Cfr9I	CCCGGG	1 cut(s)	592
CseI	GACGC	1 cut(s)	1430
Csp6I	GTAC	1 cut(s)	979
CviQI	GTAC	1 cut(s)	979
DdeI	CTNAG	9 cut(s)	75, 410, 416, 490, 762, 828, 1305, 1581, 1618
DinI	GGCGCC	1 cut(s)	1233
DpnI	GATC	5 cut(s)	60, 255, 670, 1655, 1846
DpnII	GATC	5 cut(s)	58, 253, 668, 1653, 1844
DraI	TTTAAA	1 cut(s)	1759
EaeI	YGGCCR	1 cut(s)	940
Eam1104I	CTCTTC	5 cut(s)	1005, 1332, 1353, 1396, 1401
EarI	CTCTTC	5 cut(s)	1005, 1332, 1353, 1396, 1401
Ecl136II	GAGCTC	2 cut(s)	183, 489
Eco130I	CCWWGG	3 cut(s)	132, 375, 1019
Eco147I	AGGCCT	2 cut(s)	812, 1270
Eco24I	GRGCYC	5 cut(s)	185, 375, 491, 1413, 1663
Eco31I	GGTCTC	1 cut(s)	425
Eco47I	GGWCC	5 cut(s)	222, 321, 520, 651, 1151
Eco53kI	GAGCTC	2 cut(s)	183, 489
Eco57I	CTGAAG	4 cut(s)	414, 1341, 1377, 1538
Eco88I	CYCGRG	4 cut(s)	156, 422, 592, 955
EcoICRI	GAGCTC	2 cut(s)	183, 489
EcoO109I	RGGNCCY	1 cut(s)	1151
EcoRI	GAATTC	4 cut(s)	202, 405, 1074, 1309
EcoRII	CCWGG	3 cut(s)	964, 1345, 1886
EcoT14I	CCWWGG	3 cut(s)	132, 375, 1019
EcoT22I	ATGCAT	1 cut(s)	212
EcoT38I	GRGCYC	5 cut(s)	185, 375, 491, 1413, 1663
EgeI	GGCGCC	1 cut(s)	1233
EheI	GGCGCC	1 cut(s)	1233
ErhI	CCWWGG	3 cut(s)	132, 375, 1019
Esp3I	CGTCTC	1 cut(s)	861
FaqI	GGGAC	2 cut(s)	235, 698
FblI	GTMKAC	1 cut(s)	757
Fnu4HI	GCNGC	9 cut(s)	141, 461, 840, 879, 1343, 1439, 1714, 1800, 1878
FokI	GGATG	7 cut(s)	368, 440, 541, 595, 1037, 1205, 1733
FriOI	GRGCYC	5 cut(s)	185, 375, 491, 1413, 1663
Fsp4HI	GCNGC	9 cut(s)	141, 461, 840, 879, 1343, 1439, 1714, 1800, 1878
FspBI	CTAG	2 cut(s)	681, 1059
GlaI	GCGC	2 cut(s)	971, 1233
GluI	GCNGC	9 cut(s)	141, 461, 840, 879, 1343, 1439, 1714, 1800, 1878
GsaI	CCCAGC	2 cut(s)	439, 1134
HaeII	RGCGCY	1 cut(s)	1235
HaeIII	GGCC	7 cut(s)	131, 591, 812, 942, 1018, 1270, 1369
HapII	CCGG	6 cut(s)	593, 612, 620, 1127, 1254, 1657
HgaI	GACGC	1 cut(s)	1430
HhaI	GCGC	2 cut(s)	972, 1234
Hin1I	GRCGYC	2 cut(s)	5, 1232
Hin6I	GCGC	2 cut(s)	970, 1232
HinP1I	GCGC	2 cut(s)	970, 1232
HincII	GTYRAC	1 cut(s)	1672
HindII	GTYRAC	1 cut(s)	1672
HindIII	AAGCTT	3 cut(s)	245, 396, 1562
HpaII	CCGG	6 cut(s)	593, 612, 620, 1127, 1254, 1657
HphI	GGTGA	2 cut(s)	395, 1786
Hpy166II	GTNNAC	2 cut(s)	758, 1672
Hpy188III	TCNNGA	7 cut(s)	56, 402, 697, 1284, 1445, 1608, 1740
Hpy8I	GTNNAC	2 cut(s)	758, 1672
Hpy99I	CGWCG	1 cut(s)	1446
HpyAV	CCTTC	6 cut(s)	374, 578, 914, 997, 1281, 1855
HpyCH4III	ACNGT	2 cut(s)	24, 904
HpyF3I	CTNAG	9 cut(s)	75, 410, 416, 490, 762, 828, 1305, 1581, 1618
Hsp92I	GRCGYC	2 cut(s)	5, 1232
HspAI	GCGC	2 cut(s)	970, 1232
KasI	GGCGCC	1 cut(s)	1231
Kzo9I	GATC	5 cut(s)	58, 253, 668, 1653, 1844
LguI	GCTCTTC	2 cut(s)	1332, 1401
LmnI	GCTCC	6 cut(s)	262, 370, 486, 1171, 1330, 1666
Lsp1109I	GCAGC	9 cut(s)	127, 447, 851, 865, 1329, 1450, 1700, 1811, 1889
LweI	GCATC	7 cut(s)	563, 617, 1015, 1306, 1519, 1523, 1745
MaeI	CTAG	2 cut(s)	681, 1059
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	5 cut(s)	60, 255, 670, 1655, 1846
MboI	GATC	5 cut(s)	58, 253, 668, 1653, 1844
MfeI	CAATTG	1 cut(s)	1853
MflI	RGATCY	3 cut(s)	253, 1653, 1844
MhlI	GDGCHC	7 cut(s)	17, 185, 375, 491, 511, 1413, 1663
Mly113I	GGCGCC	1 cut(s)	1232
MlyI	GAGTC	3 cut(s)	1108, 1132, 1793
MmeI	TCCRAC	3 cut(s)	498, 1059, 1920
Mph1103I	ATGCAT	1 cut(s)	212
MroXI	GAANNNNTTC	1 cut(s)	924
MseI	TTAA	3 cut(s)	896, 1566, 1758
MslI	CAYNNNNRTG	1 cut(s)	1107
MspA1I	CMGCKG	3 cut(s)	288, 1355, 1462
MspCI	CTTAAG	1 cut(s)	1565
MspI	CCGG	6 cut(s)	593, 612, 620, 1127, 1254, 1657
MspR9I	CCNGG	7 cut(s)	593, 594, 966, 1255, 1347, 1658, 1888
MunI	CAATTG	1 cut(s)	1853
MvaI	CCWGG	3 cut(s)	966, 1347, 1888
NarI	GGCGCC	1 cut(s)	1232
NciI	CCSGG	4 cut(s)	593, 594, 1255, 1658
NcoI	CCATGG	2 cut(s)	132, 1019
NdeII	GATC	5 cut(s)	58, 253, 668, 1653, 1844
NlaIV	GGNNCC	7 cut(s)	223, 264, 372, 652, 962, 1233, 1662
NsiI	ATGCAT	1 cut(s)	212
NspV	TTCGAA	2 cut(s)	194, 278
PaeR7I	CTCGAG	1 cut(s)	422
PagI	TCATGA	1 cut(s)	55
PasI	CCCWGGG	1 cut(s)	965
PceI	AGGCCT	2 cut(s)	812, 1270
PciSI	GCTCTTC	2 cut(s)	1332, 1401
PdmI	GAANNNNTTC	1 cut(s)	924
PfeI	GAWTC	8 cut(s)	389, 693, 1301, 1577, 1724, 1743, 1808, 1892
PflMI	CCANNNNNTGG	1 cut(s)	1397
PkrI	GCNGC	9 cut(s)	142, 462, 841, 880, 1344, 1440, 1715, 1801, 1879
PleI	GAGTC	3 cut(s)	1107, 1131, 1792
PluTI	GGCGCC	1 cut(s)	1235
PpsI	GAGTC	3 cut(s)	1107, 1131, 1792
PpuMI	RGGWCCY	1 cut(s)	1151
Psp124BI	GAGCTC	2 cut(s)	185, 491
Psp5II	RGGWCCY	1 cut(s)	1151
Psp6I	CCWGG	3 cut(s)	964, 1345, 1886
PspFI	CCCAGC	2 cut(s)	435, 1130
PspGI	CCWGG	3 cut(s)	964, 1345, 1886
PspN4I	GGNNCC	7 cut(s)	223, 264, 372, 652, 962, 1233, 1662
PspPI	GGNCC	6 cut(s)	222, 321, 520, 590, 651, 1151
PspPPI	RGGWCCY	1 cut(s)	1151
PspXI	VCTCGAGB	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	465
PstNI	CAGNNNCTG	2 cut(s)	74, 1319
PsuI	RGATCY	3 cut(s)	253, 1653, 1844
PvuII	CAGCTG	2 cut(s)	288, 1355
RsaI	GTAC	1 cut(s)	980
RsaNI	GTAC	1 cut(s)	979
RseI	CAYNNNNRTG	1 cut(s)	1107
SacI	GAGCTC	2 cut(s)	185, 491
SapI	GCTCTTC	2 cut(s)	1332, 1401
SaqAI	TTAA	3 cut(s)	896, 1566, 1758
SatI	GCNGC	9 cut(s)	141, 461, 840, 879, 1343, 1439, 1714, 1800, 1878
Sau3AI	GATC	5 cut(s)	58, 253, 668, 1653, 1844
Sau96I	GGNCC	6 cut(s)	222, 321, 520, 590, 651, 1151
SchI	GAGTC	3 cut(s)	1108, 1132, 1793
ScrFI	CCNGG	7 cut(s)	593, 594, 966, 1255, 1347, 1658, 1888
SduI	GDGCHC	7 cut(s)	17, 185, 375, 491, 511, 1413, 1663
SfaNI	GCATC	7 cut(s)	563, 617, 1015, 1306, 1519, 1523, 1745
SfcI	CTRYAG	1 cut(s)	461
SfoI	GGCGCC	1 cut(s)	1233
Sfr274I	CTCGAG	1 cut(s)	422
SfuI	TTCGAA	2 cut(s)	194, 278
SinI	GGWCC	5 cut(s)	222, 321, 520, 651, 1151
SlaI	CTCGAG	1 cut(s)	422
SmaI	CCCGGG	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	1107
SmlI	CTYRAG	5 cut(s)	422, 1146, 1205, 1565, 1839
SmoI	CTYRAG	5 cut(s)	422, 1146, 1205, 1565, 1839
SrfI	GCCCGGGC	1 cut(s)	594
SseBI	AGGCCT	2 cut(s)	812, 1270
SsiI	CCGC	4 cut(s)	143, 1220, 1462, 1797
SspDI	GGCGCC	1 cut(s)	1231
SspMI	CTAG	2 cut(s)	681, 1059
SstI	GAGCTC	2 cut(s)	185, 491
StuI	AGGCCT	2 cut(s)	812, 1270
StyD4I	CCNGG	7 cut(s)	591, 592, 964, 1253, 1345, 1656, 1886
StyI	CCWWGG	3 cut(s)	132, 375, 1019
TaaI	ACNGT	2 cut(s)	24, 904
TaqII	GACCGA	2 cut(s)	239, 537
TfiI	GAWTC	8 cut(s)	389, 693, 1301, 1577, 1724, 1743, 1808, 1892
Tru1I	TTAA	3 cut(s)	896, 1566, 1758
Tru9I	TTAA	3 cut(s)	896, 1566, 1758
TscAI	CASTG	3 cut(s)	822, 907, 1780
TseI	GCWGC	9 cut(s)	140, 460, 839, 878, 1342, 1438, 1713, 1799, 1877
TspDTI	ATGAA	5 cut(s)	95, 135, 195, 1067, 1808
TspGWI	ACGGA	2 cut(s)	1197, 1387
TspMI	CCCGGG	1 cut(s)	592
TspRI	CASTG	3 cut(s)	822, 907, 1780
Van91I	CCANNNNNTGG	1 cut(s)	1397
Vha464I	CTTAAG	1 cut(s)	1565
VpaK11BI	GGWCC	5 cut(s)	222, 321, 520, 651, 1151
XapI	RAATTY	8 cut(s)	202, 280, 312, 405, 766, 1074, 1309, 1790
XhoI	CTCGAG	1 cut(s)	422
XmaI	CCCGGG	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	757
XmnI	GAANNNNTTC	1 cut(s)	924
XspI	CTAG	2 cut(s)	681, 1059
Zsp2I	ATGCAT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.