Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011863

Physical Location & Seq

Genomic Coordinates Forward (+)

38686501 .. 38689018

Gene Structure 2518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0274500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTGGCGGTGGTTCGACCTCAGGCTTGAAGCTCCCAAAGCGATTTCGCTGAAGGAGGCCGTCGGAGCCATGGCTCAAGTAGCCTTAACCGACATAGAGCTCGACGGCAGCCCCCAAAAGGCCAACCTCTGCGTCACTCCGGAGACGGTCGCACTGGTTTCCAAAACCCAGGCTACTGATGCCGTCAGCGTGCTGCTGATGCCGAAACAGTTGATGACGAGCTTCAAGTGCTACGAAAGGCGGAATCTGCAGTTCAATCTGGAAATCCTCCACCGCCAATTGCAGCTGAACAATCGGCATGCGCTCATTCTTTATGGTGAGGTAGAAAGTAAGGATATGCTTGGCTATGAAGATCCTGATGAACCGGGTGATCATGTGATTTTCTATGAGCTTGAGAATGGTCCTGACAGGATGATTCACTCCTTTAAAATGCCACTGCTTTCATGGAATCGGGATGCGACGGACCTAAGATTCTTAGCAAATCAATATCCAGTGCGCCTTGGCTTGTCTTCAGCGAGATTTTGTGAGCTTATCACTGATATGGATTCTTTTGGGTGTACAGTTCATGCCACACTGTTCGAAAATGAGGTTCTTTTCCGTGTAGTGAATTACGAGCGTGTCTTCCCAACAGAGCCCTCAAGATGCGAGACTGAGAGTGATCATGGATTTCCGTGTGCGTTGAAGTTTGGTATCCAGCACATAAAGGCGCTTCTCAATGCCGCTACTTTGTCAGAGATGATATGGATATGGTCCTCGGATAAGTTCACCTTGCTCAGCTTCCCAATTGATGGCCTGGGTAAACTTTTCTTTGGCCATTACAAGTTTACAACTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009892 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

278

Amino Acids

31.81

Weight (kDa)

5.4

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01260 AT1G01260 AT1G01260
fragaria_vesca	FvH4_7g16800
malus_domestica	MD01G1082700.v1.1 MD07G1151000.v1.1
prunus_persica	Prupe.2G190100_v2.0.a1 Prupe.2G190100_v2.0.a1
pyrus_communis	pycom07g14930
rosa_chinensis	RchiOBHm_Chr1g0360001
rosa_laevigata	RLG00000027841
rosa_multiflora	Rmu_ssc0000368.1_g000016
rosa_roxburghii	Rroxscaffold_4G00296560
rosa_rugosa	Rorug01G0274500
rosa_samantha	Rh1AG288300 Rh1BG253800 Rh1CG271300 Rh1DG282900
rosa_wichuraiana	Rw1G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	788
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	4 cut(s)	7, 241, 274, 720
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	1 cut(s)	811
AcuI	CTGAAG	2 cut(s)	71, 495
AfaI	GTAC	1 cut(s)	559
AfiI	CCNNNNNNNGG	2 cut(s)	118, 788
AgsI	TTSAA	4 cut(s)	29, 226, 256, 682
AjnI	CCWGG	2 cut(s)	168, 792
AluBI	AGCT	7 cut(s)	32, 100, 222, 286, 391, 529, 777
AluI	AGCT	7 cut(s)	32, 100, 222, 286, 391, 529, 777
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	137, 641
AlwI	GGATC	1 cut(s)	347
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	4 cut(s)	57, 120, 790, 811
ApeKI	GCWGC	3 cut(s)	108, 193, 283
AspLEI	GCGC	3 cut(s)	304, 498, 709
AspS9I	GGNCC	3 cut(s)	401, 463, 750
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	3 cut(s)	329, 380, 757
AsuII	TTCGAA	1 cut(s)	579
AvaII	GGWCC	3 cut(s)	401, 463, 750
AxyI	CCTNAGG	1 cut(s)	20
BalI	TGGCCA	1 cut(s)	813
BanII	GRGCYC	2 cut(s)	102, 636
BbsI	GAAGAC	2 cut(s)	501, 613
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	3 cut(s)	120, 180, 295
BccI	CCATC	1 cut(s)	782
BceAI	ACGGC	3 cut(s)	44, 121, 167
BciT130I	CCWGG	2 cut(s)	170, 794
BciVI	GTATCC	1 cut(s)	701
BclI	TGATCA	2 cut(s)	370, 658
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	137, 641
BfmI	CTRYAG	1 cut(s)	248
BfoI	RGCGCY	1 cut(s)	710
BfuI	GTATCC	1 cut(s)	701
BisI	GCNGC	4 cut(s)	109, 194, 284, 720
BlpI	GCTNAGC	1 cut(s)	773
BlsI	GCNGC	4 cut(s)	110, 195, 285, 721
Bme1390I	CCNGG	3 cut(s)	170, 366, 794
Bme18I	GGWCC	3 cut(s)	401, 463, 750
BmgT120I	GGNCC	3 cut(s)	401, 463, 750
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	3 cut(s)	170, 366, 794
BmsI	GCATC	4 cut(s)	169, 189, 445, 632
BpiI	GAAGAC	2 cut(s)	501, 613
Bpu1102I	GCTNAGC	1 cut(s)	773
Bpu14I	TTCGAA	1 cut(s)	579
BpuEI	CTTGAG	3 cut(s)	60, 413, 622
BpuMI	CCSGG	1 cut(s)	366
BsaJI	CCNNGG	5 cut(s)	69, 168, 499, 753, 793
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 788
Bse1I	ACTGG	2 cut(s)	159, 491
Bse21I	CCTNAGG	1 cut(s)	20
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	2 cut(s)	170, 794
BseDI	CCNNGG	5 cut(s)	69, 168, 499, 753, 793
BseGI	GGATG	2 cut(s)	417, 460
BseLI	CCNNNNNNNGG	2 cut(s)	118, 788
BseMII	CTCAG	3 cut(s)	34, 642, 787
BseNI	ACTGG	2 cut(s)	159, 491
BseXI	GCAGC	3 cut(s)	120, 180, 295
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	4 cut(s)	59, 122, 792, 813
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	140, 365
BslI	CCNNNNNNNGG	2 cut(s)	118, 788
BsmAI	GTCTC	2 cut(s)	137, 641
BsmBI	CGTCTC	1 cut(s)	137
BsnI	GGCC	4 cut(s)	59, 122, 792, 813
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1286I	GDGCHC	2 cut(s)	102, 636
Bsp13I	TCCGGA	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	557
Bsp143I	GATC	3 cut(s)	352, 370, 658
Bsp1720I	GCTNAGC	1 cut(s)	773
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	4 cut(s)	7, 241, 274, 720
BspANI	GGCC	4 cut(s)	59, 122, 792, 813
BspCNI	CTCAG	3 cut(s)	33, 643, 786
BspEI	TCCGGA	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	67
BspMAI	CTGCAG	1 cut(s)	252
BspPI	GGATC	1 cut(s)	347
BspT104I	TTCGAA	1 cut(s)	579
BsrGI	TGTACA	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	159, 491
BssECI	CCNNGG	5 cut(s)	69, 168, 499, 753, 793
BssMI	GATC	3 cut(s)	352, 370, 658
BssT1I	CCWWGG	2 cut(s)	69, 499
Bst2UI	CCWGG	2 cut(s)	170, 794
Bst4CI	ACNGT	4 cut(s)	148, 210, 562, 576
BstAUI	TGTACA	1 cut(s)	557
BstBI	TTCGAA	1 cut(s)	579
BstC8I	GCNNGC	2 cut(s)	191, 300
BstDEI	CTNAG	5 cut(s)	20, 467, 475, 651, 773
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	417, 460
BstH2I	RGCGCY	1 cut(s)	710
BstHHI	GCGC	3 cut(s)	304, 498, 709
BstKTI	GATC	3 cut(s)	355, 373, 661
BstMAI	GTCTC	2 cut(s)	137, 641
BstMBI	GATC	3 cut(s)	352, 370, 658
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 65, 80, 179, 199, 228, 247
BstNI	CCWGG	2 cut(s)	170, 794
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	3 cut(s)	168, 364, 792
BstSFI	CTRYAG	1 cut(s)	248
BstV1I	GCAGC	3 cut(s)	120, 180, 295
BstV2I	GAAGAC	2 cut(s)	501, 613
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
Bsu36I	CCTNAGG	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	701
BsuRI	GGCC	4 cut(s)	59, 122, 792, 813
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	417, 460
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	5 cut(s)	152, 434, 498, 534, 572
Cac8I	GCNNGC	2 cut(s)	191, 300
CfoI	GCGC	3 cut(s)	304, 498, 709
Cfr13I	GGNCC	3 cut(s)	401, 463, 750
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	558
CviAII	CATG	6 cut(s)	70, 299, 374, 444, 566, 662
CviQI	GTAC	1 cut(s)	558
DdeI	CTNAG	5 cut(s)	20, 467, 475, 651, 773
DpnI	GATC	3 cut(s)	354, 372, 660
DpnII	GATC	3 cut(s)	352, 370, 658
DraI	TTTAAA	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	811
EciI	GGCGGA	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	69, 499
Eco24I	GRGCYC	2 cut(s)	102, 636
Eco47I	GGWCC	3 cut(s)	401, 463, 750
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	71, 495
Eco81I	CCTNAGG	1 cut(s)	20
EcoICRI	GAGCTC	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	168, 792
EcoT14I	CCWWGG	2 cut(s)	69, 499
EcoT38I	GRGCYC	2 cut(s)	102, 636
ErhI	CCWWGG	2 cut(s)	69, 499
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	6 cut(s)	73, 302, 377, 447, 569, 665
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FatI	CATG	6 cut(s)	69, 298, 373, 443, 565, 661
FbaI	TGATCA	2 cut(s)	370, 658
Fnu4HI	GCNGC	4 cut(s)	109, 194, 284, 720
FokI	GGATG	2 cut(s)	424, 467
FriOI	GRGCYC	2 cut(s)	102, 636
Fsp4HI	GCNGC	4 cut(s)	109, 194, 284, 720
GlaI	GCGC	3 cut(s)	303, 497, 708
GluI	GCNGC	4 cut(s)	109, 194, 284, 720
HaeII	RGCGCY	1 cut(s)	710
HaeIII	GGCC	4 cut(s)	59, 122, 792, 813
HapII	CCGG	2 cut(s)	140, 365
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	3 cut(s)	304, 498, 709
Hin1II	CATG	6 cut(s)	73, 302, 377, 447, 569, 665
Hin6I	GCGC	3 cut(s)	302, 496, 707
HinP1I	GCGC	3 cut(s)	302, 496, 707
HinfI	GANTC	5 cut(s)	244, 415, 448, 471, 545
HpaII	CCGG	2 cut(s)	140, 365
HphI	GGTGA	3 cut(s)	329, 380, 757
Hpy166II	GTNNAC	4 cut(s)	558, 765, 800, 825
Hpy188I	TCNGA	3 cut(s)	65, 733, 757
Hpy188III	TCNNGA	6 cut(s)	140, 260, 356, 404, 452, 639
Hpy8I	GTNNAC	4 cut(s)	558, 765, 800, 825
Hpy99I	CGWCG	3 cut(s)	65, 107, 463
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	4 cut(s)	148, 210, 562, 576
HpyCH4V	TGCA	2 cut(s)	250, 283
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 65, 80, 179, 199, 228, 247
HpyF3I	CTNAG	5 cut(s)	20, 467, 475, 651, 773
Hsp92II	CATG	6 cut(s)	73, 302, 377, 447, 569, 665
HspAI	GCGC	3 cut(s)	302, 496, 707
Kpn2I	TCCGGA	1 cut(s)	139
Ksp22I	TGATCA	2 cut(s)	370, 658
Kzo9I	GATC	3 cut(s)	352, 370, 658
LmnI	GCTCC	2 cut(s)	37, 65
Lsp1109I	GCAGC	3 cut(s)	120, 180, 295
LweI	GCATC	4 cut(s)	169, 189, 445, 632
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	354, 372, 660
MboI	GATC	3 cut(s)	352, 370, 658
MboII	GAAGA	3 cut(s)	362, 501, 613
MfeI	CAATTG	2 cut(s)	278, 783
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	102, 636
MlsI	TGGCCA	1 cut(s)	813
MluCI	AATT	3 cut(s)	278, 607, 783
MluNI	TGGCCA	1 cut(s)	813
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	8 cut(s)	29, 49, 137, 278, 313, 580, 646, 763
Mox20I	TGGCCA	1 cut(s)	813
MroI	TCCGGA	1 cut(s)	139
MscI	TGGCCA	1 cut(s)	813
MseI	TTAA	2 cut(s)	86, 426
MslI	CAYNNNNRTG	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	813
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	2 cut(s)	140, 365
MspR9I	CCNGG	3 cut(s)	170, 366, 794
MunI	CAATTG	2 cut(s)	278, 783
MvaI	CCWGG	2 cut(s)	170, 794
MwoI	GCNNNNNNNGC	7 cut(s)	38, 65, 80, 179, 199, 228, 247
NciI	CCSGG	1 cut(s)	366
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	3 cut(s)	352, 370, 658
NlaIII	CATG	6 cut(s)	73, 302, 377, 447, 569, 665
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	302
NspV	TTCGAA	1 cut(s)	579
PaeI	GCATGC	1 cut(s)	302
PfeI	GAWTC	5 cut(s)	244, 415, 448, 471, 545
PflMI	CCANNNNNTGG	1 cut(s)	788
PkrI	GCNGC	4 cut(s)	110, 195, 285, 721
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	168, 792
PspGI	CCWGG	2 cut(s)	168, 792
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	3 cut(s)	401, 463, 750
PstI	CTGCAG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	1 cut(s)	559
RsaNI	GTAC	1 cut(s)	558
RseI	CAYNNNNRTG	1 cut(s)	539
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	86, 426
SatI	GCNGC	4 cut(s)	109, 194, 284, 720
Sau3AI	GATC	3 cut(s)	352, 370, 658
Sau96I	GGNCC	3 cut(s)	401, 463, 750
ScrFI	CCNGG	3 cut(s)	170, 366, 794
SduI	GDGCHC	2 cut(s)	102, 636
SfaNI	GCATC	4 cut(s)	169, 189, 445, 632
SfcI	CTRYAG	1 cut(s)	248
SfuI	TTCGAA	1 cut(s)	579
SinI	GGWCC	3 cut(s)	401, 463, 750
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	3 cut(s)	75, 392, 637
SmoI	CTYRAG	3 cut(s)	75, 392, 637
SphI	GCATGC	1 cut(s)	302
Sse9I	AATT	3 cut(s)	278, 607, 783
SsiI	CCGC	4 cut(s)	7, 241, 274, 720
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	3 cut(s)	168, 364, 792
StyI	CCWWGG	2 cut(s)	69, 499
TaaI	ACNGT	4 cut(s)	148, 210, 562, 576
TaqI	TCGA	3 cut(s)	15, 102, 579
TasI	AATT	3 cut(s)	278, 607, 783
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	1 cut(s)	722
TfiI	GAWTC	5 cut(s)	244, 415, 448, 471, 545
Tru1I	TTAA	2 cut(s)	86, 426
Tru9I	TTAA	2 cut(s)	86, 426
TscAI	CASTG	5 cut(s)	159, 441, 498, 541, 579
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	3 cut(s)	108, 193, 283
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	363, 375, 432, 554
TspGWI	ACGGA	3 cut(s)	476, 587, 660
TspRI	CASTG	5 cut(s)	159, 441, 498, 541, 579
Van91I	CCANNNNNTGG	1 cut(s)	788
VpaK11BI	GGWCC	3 cut(s)	401, 463, 750
XceI	RCATGY	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.