Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011863

Physical Location & Seq

Genomic Coordinates Reverse (-)

18903895 .. 18907040

Gene Structure 3146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1082700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1842 bp

ATGAAGAATGAGATGGGTTTAGGAGGAGGGGTTTGGGATGATGAAGATAAAGCCATGGTTGCTGCAGTTTTAGGAACCAGAGCTTTCGATTACTTGATTTCGAGCGCGGTTTCCTCGAATGAGAATTCATGTATGGGTATCGGGACTGATGAGAATTTGCACAACAAGCTCTCGGATCTCGTGGAGCGTCCGAATGCATCGAATTTTAGCTGGAATTATGCCATTTTCTGGCAGATTTCTAGGTCCAAGTCTGGGGATTGGGTTTTGTGTTGGGGTGATGGTTCTTGTAGAGAGCCTAAGGAAGGTGAAGAGTCCGAAACCAGGAGGATTCTCGGTCTTAGCCTTGAGGATGGGACCCAGCAGAGGATGAGGAAGATAGTGCTGCAAAAGTTACACAATTTGTTTGGGAGCTCAGATGAGTATAATGGTGCTCTTGGATTAGACCGGGTCACCGATATGGAGATGTTCTTGCTTGCCTCCATGTATTTTTCGTTTCCAAGAGGAGAGGAGGGTCCTGGCAAGTGCTTTGCATCTGGGGAGCATGTCTGGCTCTTGGACTTGTTGAAATCAGGGTCGGAGTATTGCGTTCGATCGTTTCTTGCTAAGTCTGCTGGAATTCAGACCATTGTTTTAGTCCCAACAGATGTTGGTGTAGTTGAATTGGGTTCAGTGAGATGCATAGGGGAGCGTTTAGAGTTGTTGCAGTCCATAAGGTCACTGTTCTCTACACAGTCCTCGCACATGAGGGCTAAGCCAGTGGCAGGTGTGCCGATGATTGGAAGGAGGAGAGATGAAAATGTCCAACTAACGAATCTGAGCCCTGTGGAGAGAGGGGAAGTAGTTCCCAAGATTTTCGGGCAAGATTTGAACTCAGGAAACTTAGTTCGGCCTCGTTATAGAGAAAAACTTGCTGTTAGAAAGTTGGAGGAGAGGCCCTGGGATGTGTACTCAAATGGGAATAGGATTGCATTTTCAAGTCCTCCAAATGGTATTCATGGTTCAAGTTGGCCGCACATTCACGATGTGAAACAGGGGAGCCCAACTGAGATGTATGCTTCTCAAAGTCCGGTGAATAATTTACAGGAACTTGTCAATGGGGTCAGGGATGATTTTCGTCATAACCAATATCAACCACAGAAGCAGGTGCCGATTCAAATCGACTTTTCAGGGGCCACTTCAAGGCCTTCTGTGGCTCCCCGGCCCATTGGTGTGGATTCTGAAAATTCAGATGCTGAAGCTCCATGCAAGGAAGACCAGCCAGGCACAGCTGATGAAAGGAGGCCACGGAAAAGGGGTAGGAAGCCTGCAAATGGAAGAGAAGAACCGCTCAATCATGTGGAGGCAGAGAGGCAGCGGCGGGAGAAGCTAAACCAGCGGTTTTATGCTTTAAGAGCTGTTGTGCCCAATATATCCAAGATGGACAAAGCATCCTTGTTGGGAGATGCCATTGCTTACATCAACGAGCTCCAGGCGAAGCTTAAAGTCATGGAAGCAGAGAGGGAGAATCTCGGGGGCACTTCAAGAGATGCTTCGGCCTTGGGGGCTAGCTCAGGTATGGAAATTCAGAACCAGGCACCTGATGTGGATATTCAAGCTGTTAATGACGAGGTTATTGTAAGGGTGAGCTGCCCTTTGGATTCACACCCTGCATCAAGAGTCATCGAAGCATTCAAAGAGGCACAGATCACGGTTGTTGAGTCAAAACTTGCATCAGCAGACGACACTGTGCTCCATACATTTGTTGTCAAGTCTCAAGGATCGGAGCGGTTGACGAAGGAGAAGTTGATTGCAGCATTTTCCCGGGAATCCAACTCGTTACATTCATTGTCATCAGTCGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009892 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

614

Amino Acids

67.82

Weight (kDa)

5.95

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	53 - 241	3e-52	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	444 - 490	2.3e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	528 - 599	3.8e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01260 AT1G01260 AT1G01260
fragaria_vesca	FvH4_7g16800
malus_domestica	MD01G1082700.v1.1 MD07G1151000.v1.1
prunus_persica	Prupe.2G190100_v2.0.a1 Prupe.2G190100_v2.0.a1
pyrus_communis	pycom07g14930
rosa_chinensis	RchiOBHm_Chr1g0360001
rosa_laevigata	RLG00000027841
rosa_multiflora	Rmu_ssc0000368.1_g000016
rosa_roxburghii	Rroxscaffold_4G00296560
rosa_rugosa	Rorug01G0274500
rosa_samantha	Rh1AG288300 Rh1BG253800 Rh1CG271300 Rh1DG282900
rosa_wichuraiana	Rw1G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	752, 1132
Acc36I	ACCTGC	2 cut(s)	752, 1132
AccB1I	GGYRCC	2 cut(s)	1144, 1573
AccB7I	CCANNNNNTGG	1 cut(s)	228
AccBSI	CCGCTC	2 cut(s)	1327, 1765
AccII	CGCG	1 cut(s)	107
AciI	CCGC	7 cut(s)	107, 1010, 1325, 1354, 1357, 1375, 1765
AclWI	GGATC	2 cut(s)	183, 1765
AcoI	YGGCCR	1 cut(s)	1007
AcsI	RAATTY	6 cut(s)	124, 154, 202, 615, 1222, 1560
AcuI	CTGAAG	1 cut(s)	1254
AdeI	CACNNNGTG	1 cut(s)	1024
AfaI	GTAC	1 cut(s)	947
AjnI	CCWGG	6 cut(s)	320, 514, 935, 1258, 1467, 1569
AloI	GAACNNNNNNTCC	2 cut(s)	867, 899
Alw21I	GWGCWC	4 cut(s)	413, 433, 1467, 1731
Alw26I	GTCTC	1 cut(s)	1755
AlwI	GGATC	2 cut(s)	183, 1765
AlwNI	CAGNNNCTG	1 cut(s)	1232
Ama87I	CYCGRG	2 cut(s)	1508, 1800
AoxI	GGCC	8 cut(s)	887, 932, 1007, 1170, 1181, 1199, 1280, 1533
ApeKI	GCWGC	5 cut(s)	62, 382, 1351, 1626, 1790
ApoI	RAATTY	6 cut(s)	124, 154, 202, 615, 1222, 1560
Asp700I	GAANNNNTTC	1 cut(s)	840
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	6 cut(s)	243, 354, 512, 933, 1170, 1200
AsuC2I	CCSGG	4 cut(s)	446, 1198, 1801, 1802
AsuHPI	GGTGA	5 cut(s)	287, 317, 442, 1081, 1633
AsuNHI	GCTAGC	1 cut(s)	1544
AvaI	CYCGRG	2 cut(s)	1508, 1800
AvaII	GGWCC	3 cut(s)	243, 354, 512
AxyI	CCTNAGG	1 cut(s)	297
BaeGI	GKGCMC	2 cut(s)	1404, 1517
BanI	GGYRCC	2 cut(s)	1144, 1573
BanII	GRGCYC	4 cut(s)	413, 821, 1040, 1467
BauI	CACGAG	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	1257
Bbv12I	GWGCWC	4 cut(s)	413, 433, 1467, 1731
BbvI	GCAGC	5 cut(s)	49, 369, 1363, 1613, 1802
BccI	CCATC	4 cut(s)	7, 272, 344, 1411
BciT130I	CCWGG	6 cut(s)	322, 516, 937, 1260, 1469, 1571
BcnI	CCSGG	4 cut(s)	446, 1198, 1801, 1802
BcoDI	GTCTC	1 cut(s)	1755
BfaI	CTAG	2 cut(s)	240, 1545
BfmI	CTRYAG	1 cut(s)	63
BfuAI	ACCTGC	2 cut(s)	752, 1132
BglI	GCCNNNNNGGC	1 cut(s)	1541
BisI	GCNGC	7 cut(s)	63, 383, 1010, 1352, 1355, 1627, 1791
BlpI	GCTNAGC	1 cut(s)	750
BlsI	GCNGC	7 cut(s)	64, 384, 1011, 1353, 1356, 1628, 1792
Bme18I	GGWCC	3 cut(s)	243, 354, 512
BmeT110I	CYCGRG	2 cut(s)	1508, 1800
BmgT120I	GGNCC	6 cut(s)	243, 354, 512, 933, 1170, 1200
BmiI	GGNNCC	9 cut(s)	76, 355, 356, 513, 1037, 1146, 1171, 1194, 1575
BmsI	GCATC	9 cut(s)	206, 539, 665, 1219, 1432, 1436, 1516, 1658, 1718
BmtI	GCTAGC	1 cut(s)	1548
BpiI	GAAGAC	1 cut(s)	1257
BpmI	CTGGAG	1 cut(s)	1451
Bpu10I	CCTNAGC	1 cut(s)	1549
Bpu1102I	GCTNAGC	1 cut(s)	750
BpuEI	CTTGAG	2 cut(s)	365, 1737
BpuMI	CCSGG	4 cut(s)	446, 1198, 1801, 1802
BsaBI	GATNNNNATC	1 cut(s)	1154
BsaJI	CCNNGG	7 cut(s)	54, 935, 936, 1196, 1283, 1536, 1800
BsaWI	WCCGGW	1 cut(s)	1066
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse1I	ACTGG	1 cut(s)	755
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	1446
Bse8I	GATNNNNATC	1 cut(s)	1154
BseBI	CCWGG	6 cut(s)	322, 516, 937, 1260, 1469, 1571
BseDI	CCNNGG	7 cut(s)	54, 935, 936, 1196, 1283, 1536, 1800
BseGI	GGATG	6 cut(s)	43, 355, 372, 946, 1111, 1427
BseJI	GATNNNNATC	1 cut(s)	1154
BseMI	GCAATG	1 cut(s)	1446
BseMII	CTCAG	5 cut(s)	426, 806, 885, 1035, 1563
BseNI	ACTGG	1 cut(s)	755
BseRI	GAGGAG	5 cut(s)	39, 516, 521, 799, 941
BseSI	GKGCMC	2 cut(s)	1404, 1517
BseXI	GCAGC	5 cut(s)	49, 369, 1363, 1613, 1802
BseYI	CCCAGC	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	593
BshFI	GGCC	8 cut(s)	889, 934, 1009, 1172, 1183, 1201, 1282, 1535
BshNI	GGYRCC	2 cut(s)	1144, 1573
BsiEI	CGRYCG	1 cut(s)	593
BsiHKAI	GWGCWC	4 cut(s)	413, 433, 1467, 1731
BsiHKCI	CYCGRG	2 cut(s)	1508, 1800
BsiSI	CCGG	4 cut(s)	445, 1067, 1198, 1801
BslFI	GGGAC	3 cut(s)	157, 367, 620
BsmAI	GTCTC	1 cut(s)	1755
BsmFI	GGGAC	3 cut(s)	157, 367, 620
BsmI	GAATGC	2 cut(s)	199, 1667
BsnI	GGCC	8 cut(s)	889, 934, 1009, 1172, 1183, 1201, 1282, 1535
BsoBI	CYCGRG	2 cut(s)	1508, 1800
Bsp1286I	GDGCHC	8 cut(s)	413, 433, 821, 1040, 1404, 1467, 1517, 1731
Bsp143I	GATC	4 cut(s)	175, 590, 1683, 1757
Bsp1720I	GCTNAGC	1 cut(s)	750
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	7 cut(s)	107, 1010, 1325, 1354, 1357, 1375, 1765
BspANI	GGCC	8 cut(s)	889, 934, 1009, 1172, 1183, 1201, 1282, 1535
BspCNI	CTCAG	5 cut(s)	425, 807, 884, 1036, 1562
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	9 cut(s)	76, 355, 356, 513, 1037, 1146, 1171, 1194, 1575
BspMAI	CTGCAG	1 cut(s)	67
BspMI	ACCTGC	2 cut(s)	752, 1132
BspOI	GCTAGC	1 cut(s)	1548
BspPI	GGATC	2 cut(s)	183, 1765
BspT107I	GGYRCC	2 cut(s)	1144, 1573
BsrBI	CCGCTC	2 cut(s)	1327, 1765
BsrDI	GCAATG	1 cut(s)	1446
BsrI	ACTGG	1 cut(s)	755
BssECI	CCNNGG	7 cut(s)	54, 935, 936, 1196, 1283, 1536, 1800
BssMI	GATC	4 cut(s)	175, 590, 1683, 1757
BssSI	CACGAG	1 cut(s)	179
BssT1I	CCWWGG	2 cut(s)	54, 1536
Bst2BI	CACGAG	1 cut(s)	179
Bst2UI	CCWGG	6 cut(s)	322, 516, 937, 1260, 1469, 1571
Bst4CI	ACNGT	4 cut(s)	720, 732, 1690, 1726
Bst6I	CTCTTC	2 cut(s)	303, 1309
BstC8I	GCNNGC	3 cut(s)	474, 1305, 1546
BstDSI	CCRYGG	2 cut(s)	54, 1283
BstEII	GGTNACC	1 cut(s)	448
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstF5I	GGATG	6 cut(s)	43, 355, 372, 946, 1111, 1427
BstFNI	CGCG	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	4 cut(s)	178, 593, 1686, 1760
BstMAI	GTCTC	1 cut(s)	1755
BstMBI	GATC	4 cut(s)	175, 590, 1683, 1757
BstMCI	CGRYCG	1 cut(s)	593
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 166, 547, 608, 1363, 1372, 1391, 1541
BstNI	CCWGG	6 cut(s)	322, 516, 937, 1260, 1469, 1571
BstNSI	RCATGY	1 cut(s)	545
BstPI	GGTNACC	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	63
BstSLI	GKGCMC	2 cut(s)	1404, 1517
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	5 cut(s)	49, 369, 1363, 1613, 1802
BstV2I	GAAGAC	1 cut(s)	1257
BstX2I	RGATCY	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	1210
BstYI	RGATCY	1 cut(s)	175
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	8 cut(s)	889, 934, 1009, 1172, 1183, 1201, 1282, 1535
BtgI	CCRYGG	2 cut(s)	54, 1283
BtsCI	GGATG	6 cut(s)	43, 355, 372, 946, 1111, 1427
BtsIMutI	CAGTG	4 cut(s)	675, 716, 762, 1722
BveI	ACCTGC	2 cut(s)	752, 1132
Cac8I	GCNNGC	3 cut(s)	474, 1305, 1546
CaiI	CAGNNNCTG	1 cut(s)	1232
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	6 cut(s)	243, 354, 512, 933, 1170, 1200
Cfr9I	CCCGGG	1 cut(s)	1800
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	946
CviAII	CATG	9 cut(s)	55, 129, 481, 542, 742, 995, 1242, 1334, 1486
CviQI	GTAC	1 cut(s)	946
DpnI	GATC	4 cut(s)	177, 592, 1685, 1759
DpnII	GATC	4 cut(s)	175, 590, 1683, 1757
DraIII	CACNNNGTG	1 cut(s)	1024
EaeI	YGGCCR	1 cut(s)	1007
Eam1104I	CTCTTC	2 cut(s)	303, 1309
EarI	CTCTTC	2 cut(s)	303, 1309
Ecl136II	GAGCTC	2 cut(s)	411, 1465
Eco130I	CCWWGG	2 cut(s)	54, 1536
Eco147I	AGGCCT	1 cut(s)	1183
Eco24I	GRGCYC	4 cut(s)	413, 821, 1040, 1467
Eco47I	GGWCC	3 cut(s)	243, 354, 512
Eco53kI	GAGCTC	2 cut(s)	411, 1465
Eco57I	CTGAAG	1 cut(s)	1254
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	2 cut(s)	1508, 1800
Eco91I	GGTNACC	1 cut(s)	448
EcoICRI	GAGCTC	2 cut(s)	411, 1465
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoO109I	RGGNCCY	3 cut(s)	354, 512, 933
EcoO65I	GGTNACC	1 cut(s)	448
EcoRI	GAATTC	2 cut(s)	124, 615
EcoRII	CCWGG	6 cut(s)	320, 514, 935, 1258, 1467, 1569
EcoT14I	CCWWGG	2 cut(s)	54, 1536
EcoT22I	ATGCAT	2 cut(s)	199, 680
EcoT38I	GRGCYC	4 cut(s)	413, 821, 1040, 1467
ErhI	CCWWGG	2 cut(s)	54, 1536
FaeI	CATG	9 cut(s)	58, 132, 484, 545, 745, 998, 1245, 1337, 1489
FalI	AAGNNNNNCTT	2 cut(s)	1513, 1545
FaqI	GGGAC	3 cut(s)	157, 367, 620
FatI	CATG	9 cut(s)	54, 128, 480, 541, 741, 994, 1241, 1333, 1485
FauI	CCCGC	1 cut(s)	1350
Fnu4HI	GCNGC	7 cut(s)	63, 383, 1010, 1352, 1355, 1627, 1791
FokI	GGATG	6 cut(s)	50, 362, 379, 953, 1118, 1414
FriOI	GRGCYC	4 cut(s)	413, 821, 1040, 1467
Fsp4HI	GCNGC	7 cut(s)	63, 383, 1010, 1352, 1355, 1627, 1791
FspBI	CTAG	2 cut(s)	240, 1545
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	7 cut(s)	63, 383, 1010, 1352, 1355, 1627, 1791
GsaI	CCCAGC	1 cut(s)	361
GsuI	CTGGAG	1 cut(s)	1451
HaeIII	GGCC	8 cut(s)	889, 934, 1009, 1172, 1183, 1201, 1282, 1535
HapII	CCGG	4 cut(s)	445, 1067, 1198, 1801
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	9 cut(s)	58, 132, 484, 545, 745, 998, 1245, 1337, 1489
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	1770
HindII	GTYRAC	1 cut(s)	1770
HindIII	AAGCTT	1 cut(s)	1475
HpaII	CCGG	4 cut(s)	445, 1067, 1198, 1801
HphI	GGTGA	5 cut(s)	287, 317, 442, 1081, 1633
Hpy166II	GTNNAC	2 cut(s)	946, 1770
Hpy188III	TCNNGA	5 cut(s)	142, 873, 1019, 1521, 1653
Hpy8I	GTNNAC	2 cut(s)	946, 1770
HpyAV	CCTTC	4 cut(s)	296, 774, 1194, 1768
HpyCH4III	ACNGT	4 cut(s)	720, 732, 1690, 1726
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 166, 547, 608, 1363, 1372, 1391, 1541
Hsp92II	CATG	9 cut(s)	58, 132, 484, 545, 745, 998, 1245, 1337, 1489
HspAI	GCGC	1 cut(s)	105
KflI	GGGWCCC	1 cut(s)	354
Kzo9I	GATC	4 cut(s)	175, 590, 1683, 1757
Lsp1109I	GCAGC	5 cut(s)	49, 369, 1363, 1613, 1802
LweI	GCATC	9 cut(s)	206, 539, 665, 1219, 1432, 1436, 1516, 1658, 1718
MaeI	CTAG	2 cut(s)	240, 1545
MaeIII	GTNAC	4 cut(s)	390, 448, 714, 1815
MalI	GATC	4 cut(s)	177, 592, 1685, 1759
MbiI	CCGCTC	2 cut(s)	1327, 1765
MboI	GATC	4 cut(s)	175, 590, 1683, 1757
MboII	GAAGA	7 cut(s)	16, 56, 320, 385, 1262, 1326, 1331
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	8 cut(s)	413, 433, 821, 1040, 1404, 1467, 1517, 1731
MlyI	GAGTC	3 cut(s)	320, 1665, 1706
MmeI	TCCRAC	4 cut(s)	555, 826, 903, 1833
Mph1103I	ATGCAT	2 cut(s)	199, 680
MroXI	GAANNNNTTC	1 cut(s)	840
MseI	TTAA	3 cut(s)	1388, 1479, 1599
MslI	CAYNNNNRTG	2 cut(s)	455, 1208
MspA1I	CMGCKG	3 cut(s)	1268, 1354, 1375
MspI	CCGG	4 cut(s)	445, 1067, 1198, 1801
Mva1269I	GAATGC	2 cut(s)	199, 1667
MvaI	CCWGG	6 cut(s)	322, 516, 937, 1260, 1469, 1571
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	8 cut(s)	59, 166, 547, 608, 1363, 1372, 1391, 1541
NciI	CCSGG	4 cut(s)	446, 1198, 1801, 1802
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	4 cut(s)	175, 590, 1683, 1757
NheI	GCTAGC	1 cut(s)	1544
NlaIII	CATG	9 cut(s)	58, 132, 484, 545, 745, 998, 1245, 1337, 1489
NlaIV	GGNNCC	9 cut(s)	76, 355, 356, 513, 1037, 1146, 1171, 1194, 1575
NmuCI	GTSAC	2 cut(s)	448, 714
NsiI	ATGCAT	2 cut(s)	199, 680
NspI	RCATGY	1 cut(s)	545
PaqCI	CACCTGC	2 cut(s)	752, 1132
PasI	CCCWGGG	1 cut(s)	936
PceI	AGGCCT	1 cut(s)	1183
PctI	GAATGC	2 cut(s)	199, 1667
PdmI	GAANNNNTTC	1 cut(s)	840
PfeI	GAWTC	7 cut(s)	328, 811, 1150, 1214, 1504, 1637, 1805
PflFI	GACNNNGTC	1 cut(s)	446
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	7 cut(s)	64, 384, 1011, 1353, 1356, 1628, 1792
Ple19I	CGATCG	1 cut(s)	593
PleI	GAGTC	3 cut(s)	319, 1664, 1705
PpsI	GAGTC	3 cut(s)	319, 1664, 1705
PpuMI	RGGWCCY	2 cut(s)	354, 512
Psp124BI	GAGCTC	2 cut(s)	413, 1467
Psp5II	RGGWCCY	2 cut(s)	354, 512
Psp6I	CCWGG	6 cut(s)	320, 514, 935, 1258, 1467, 1569
PspEI	GGTNACC	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	357
PspGI	CCWGG	6 cut(s)	320, 514, 935, 1258, 1467, 1569
PspN4I	GGNNCC	9 cut(s)	76, 355, 356, 513, 1037, 1146, 1171, 1194, 1575
PspPI	GGNCC	6 cut(s)	243, 354, 512, 933, 1170, 1200
PspPPI	RGGWCCY	2 cut(s)	354, 512
PsrI	GAACNNNNNNTAC	2 cut(s)	982, 1014
PstI	CTGCAG	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	1232
PsuI	RGATCY	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	446
PvuI	CGATCG	1 cut(s)	593
PvuII	CAGCTG	1 cut(s)	1268
RsaI	GTAC	1 cut(s)	947
RsaNI	GTAC	1 cut(s)	946
RseI	CAYNNNNRTG	2 cut(s)	455, 1208
SacI	GAGCTC	2 cut(s)	413, 1467
SaqAI	TTAA	3 cut(s)	1388, 1479, 1599
SatI	GCNGC	7 cut(s)	63, 383, 1010, 1352, 1355, 1627, 1791
Sau3AI	GATC	4 cut(s)	175, 590, 1683, 1757
Sau96I	GGNCC	6 cut(s)	243, 354, 512, 933, 1170, 1200
SchI	GAGTC	3 cut(s)	320, 1665, 1706
SduI	GDGCHC	8 cut(s)	413, 433, 821, 1040, 1404, 1467, 1517, 1731
SfaNI	GCATC	9 cut(s)	206, 539, 665, 1219, 1432, 1436, 1516, 1658, 1718
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	3 cut(s)	243, 354, 512
SmaI	CCCGGG	1 cut(s)	1802
SmiMI	CAYNNNNRTG	2 cut(s)	455, 1208
SmlI	CTYRAG	2 cut(s)	344, 1752
SmoI	CTYRAG	2 cut(s)	344, 1752
SseBI	AGGCCT	1 cut(s)	1183
SsiI	CCGC	7 cut(s)	107, 1010, 1325, 1354, 1357, 1375, 1765
SspMI	CTAG	2 cut(s)	240, 1545
SstI	GAGCTC	2 cut(s)	413, 1467
StuI	AGGCCT	1 cut(s)	1183
StyI	CCWWGG	2 cut(s)	54, 1536
TaaI	ACNGT	4 cut(s)	720, 732, 1690, 1726
TaqI	TCGA	7 cut(s)	87, 101, 116, 200, 589, 1158, 1662
TaqII	GACCGA	1 cut(s)	323
TatI	WGTACW	1 cut(s)	945
TauI	GCSGC	2 cut(s)	1012, 1357
TfiI	GAWTC	7 cut(s)	328, 811, 1150, 1214, 1504, 1637, 1805
Tru1I	TTAA	3 cut(s)	1388, 1479, 1599
Tru9I	TTAA	3 cut(s)	1388, 1479, 1599
TscAI	CASTG	4 cut(s)	675, 723, 762, 1729
TseFI	GTSAC	2 cut(s)	448, 714
TseI	GCWGC	5 cut(s)	62, 382, 1351, 1626, 1790
Tsp45I	GTSAC	2 cut(s)	448, 714
TspDTI	ATGAA	7 cut(s)	17, 57, 117, 807, 983, 1287, 1812
TspGWI	ACGGA	1 cut(s)	1300
TspMI	CCCGGG	1 cut(s)	1800
TspRI	CASTG	4 cut(s)	675, 723, 762, 1729
Tth111I	GACNNNGTC	1 cut(s)	446
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	3 cut(s)	243, 354, 512
XagI	CCTNNNNNAGG	1 cut(s)	300
XapI	RAATTY	6 cut(s)	124, 154, 202, 615, 1222, 1560
XceI	RCATGY	1 cut(s)	545
XmaI	CCCGGG	1 cut(s)	1800
XmnI	GAANNNNTTC	1 cut(s)	840
XspI	CTAG	2 cut(s)	240, 1545
Zsp2I	ATGCAT	2 cut(s)	199, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.