AT1G01725

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010869
Physical Location & Seq
Reverse (-)
269792 .. 270859
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01725.1

Sequence Viewer

Length: 189 bp
ATGAATCCCCAAATTGAAAAGGTGGTGAAGGTAACCAGTGTGGTGGCGACTGCTGTTGTATCGTACTTCCTCTTAACCGCTGATTACGGTCCAGAGCCCAACGCTCTTGATCCTATCAGACAGAGGATACTTTCAGCGCAAGATTCCGTGAAAGAGTTCATCTTTCCATCAAAGAAGTCCGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.88

Weight (kDa)

8.03

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 78
AclWI GGATC 1 cut(s) 104
AfaI GTAC 1 cut(s) 65
AgsI TTSAA 1 cut(s) 17
AlwI GGATC 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 99
BccI CCATC 1 cut(s) 175
BciVI GTATCC 1 cut(s) 120
BfuI GTATCC 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 1 cut(s) 78
BspPI GGATC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 36
BssMI GATC 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 89
BstEII GGTNACC 1 cut(s) 31
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstPI GGTNACC 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 43
BsuI GTATCC 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 64
CviJI RGCY 1 cut(s) 97
CviKI_1 RGCY 1 cut(s) 97
CviQI GTAC 1 cut(s) 64
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 89
Eco91I GGTNACC 1 cut(s) 31
EcoO65I GGTNACC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 99
GlaI GCGC 1 cut(s) 138
HhaI GCGC 1 cut(s) 139
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 2 cut(s) 4, 143
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 119, 181
Hpy188III TCNNGA 2 cut(s) 92, 107
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 89
HspAI GCGC 1 cut(s) 137
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 2 cut(s) 49, 105
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 1 cut(s) 12
MnlI CCTC 2 cut(s) 80, 117
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 80
NdeII GATC 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 2 cut(s) 4, 143
PspEI GGTNACC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 89
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 74
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 89
SduI GDGCHC 1 cut(s) 99
SetI ASST 2 cut(s) 24, 33
SgeI CNNG 5 cut(s) 48, 104, 119, 152, 160
SinI GGWCC 1 cut(s) 89
Sse9I AATT 1 cut(s) 12
SsiI CCGC 1 cut(s) 78
TaaI ACNGT 1 cut(s) 89
TasI AATT 1 cut(s) 12
TfiI GAWTC 2 cut(s) 4, 143
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 17, 148
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.