Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016725.1

Orthogroup ID

OG0010869

Physical Location & Seq

Genomic Coordinates Forward (+)

10057 .. 11472

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016725.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atgaacccacaagtggataagctggtgagggggacaacaatagtggctactatcactgcttcctattttctcttaaccgctgattatggccctgagcccaatgttctcgaccctattaagagggcaatacagtccgcagaaagctctgtcaaagacttcatctttggatcaaagactcaacctccaaaaagcgaagtgaagaagttgggccctaacagcgcaaaggaacatccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

78

Amino Acids

8.47

Weight (kDa)

9.05

Isoelectric Point (pI)

22.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01725 AT4G00530
fragaria_vesca	FvH4_7g14160
malus_domestica	MD07G1139100.v1.1
prunus_persica	Prupe.2G168000_v2.0.a1 Prupe.2G168000_v2.0.a1
pyrus_communis	pycom07g13610
rosa_chinensis	RchiOBHm_Chr1g0354811 RchiOBHm_Chr1g0355061
rosa_multiflora	Rmu_sc0003115.1_g000029 Rmu_sc0016725.1_g000004
rosa_roxburghii	Rroxscaffold_4G00300700
rosa_rugosa	Rorug01G0244800
rosa_samantha	Rh1AG257100 Rh1BG226400 Rh1CG240700 Rh1DG254000
rosa_wichuraiana	Rw0G011200 Rw1G022590 Rw1G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	78, 135
AclWI	GGATC	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	13
AluBI	AGCT	2 cut(s)	22, 144
AluI	AGCT	2 cut(s)	22, 144
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	2 cut(s)	88, 208
ApaI	GGGCCC	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	3 cut(s)	89, 208, 209
AsuHPI	GGTGA	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	99, 212
BmgT120I	GGNCC	3 cut(s)	89, 208, 209
BmiI	GGNNCC	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	212
BshFI	GGCC	2 cut(s)	90, 210
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	90, 210
Bsp120I	GGGCCC	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	99, 212
Bsp143I	GATC	1 cut(s)	167
BspACI	CCGC	2 cut(s)	78, 135
BspANI	GGCC	2 cut(s)	90, 210
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	175
BssMI	GATC	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	93, 234
BstF5I	GGATG	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	90, 210
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	3 cut(s)	89, 208, 209
CspCI	CAANNNNNGTGG	2 cut(s)	24, 59
CviJI	RGCY	6 cut(s)	22, 47, 90, 97, 144, 210
CviKI_1	RGCY	6 cut(s)	22, 47, 90, 97, 144, 210
DdeI	CTNAG	2 cut(s)	93, 234
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
Eco24I	GRGCYC	2 cut(s)	99, 212
EcoO109I	RGGNCCY	1 cut(s)	209
EcoT38I	GRGCYC	2 cut(s)	99, 212
FaiI	YATR	1 cut(s)	87
FaqI	GGGAC	1 cut(s)	46
FokI	GGATG	1 cut(s)	216
FriOI	GRGCYC	2 cut(s)	99, 212
GlaI	GCGC	1 cut(s)	220
HaeIII	GGCC	2 cut(s)	90, 210
HhaI	GCGC	1 cut(s)	221
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	175
HphI	GGTGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	2 cut(s)	93, 234
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	167
LpnPI	CCDG	2 cut(s)	8, 105
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	99, 212
MlyI	GAGTC	1 cut(s)	169
MnlI	CCTC	3 cut(s)	21, 114, 192
MseI	TTAA	2 cut(s)	74, 117
MspA1I	CMGCKG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	216
NdeII	GATC	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	210
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	210
PspOMI	GGGCCC	1 cut(s)	208
PspPI	GGNCC	3 cut(s)	89, 208, 209
SaqAI	TTAA	2 cut(s)	74, 117
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	3 cut(s)	89, 208, 209
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	2 cut(s)	99, 212
SetI	ASST	3 cut(s)	24, 146, 184
SgeI	CNNG	4 cut(s)	23, 35, 104, 119
SsiI	CCGC	2 cut(s)	78, 135
TaaI	ACNGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	108
Tru1I	TTAA	2 cut(s)	74, 117
Tru9I	TTAA	2 cut(s)	74, 117
TscAI	CASTG	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	17, 148
TspRI	CASTG	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.