Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003115.1

Orthogroup ID

OG0010869

Physical Location & Seq

Genomic Coordinates Forward (+)

128793 .. 130213

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003115.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atgaacccacaagtggataagctggtgaaggggacaactatagtggctactatcactgcttcctattttctcttaaccgctgattatggccctgagcccaatgttctcgaccctattaagaaggcaatacagtctgcagaaagctccgttaaagacttcatctttggatcaaagactcaaccgccagaaagccaagtgaaggagctgggccctaacagcgcaaaggaacgtccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

78

Amino Acids

8.43

Weight (kDa)

6.16

Isoelectric Point (pI)

26.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01725 AT4G00530
fragaria_vesca	FvH4_7g14160
malus_domestica	MD07G1139100.v1.1
prunus_persica	Prupe.2G168000_v2.0.a1 Prupe.2G168000_v2.0.a1
pyrus_communis	pycom07g13610
rosa_chinensis	RchiOBHm_Chr1g0354811 RchiOBHm_Chr1g0355061
rosa_multiflora	Rmu_sc0003115.1_g000029 Rmu_sc0016725.1_g000004
rosa_roxburghii	Rroxscaffold_4G00300700
rosa_rugosa	Rorug01G0244800
rosa_samantha	Rh1AG257100 Rh1BG226400 Rh1CG240700 Rh1DG254000
rosa_wichuraiana	Rw0G011200 Rw1G022590 Rw1G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	78, 182
AclWI	GGATC	1 cut(s)	175
AfiI	CCNNNNNNNGG	2 cut(s)	13, 199
AluBI	AGCT	3 cut(s)	22, 144, 205
AluI	AGCT	3 cut(s)	22, 144, 205
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	2 cut(s)	88, 208
ApaI	GGGCCC	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	3 cut(s)	89, 208, 209
AsuHPI	GGTGA	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	99, 212
BfmI	CTRYAG	2 cut(s)	39, 135
BmgT120I	GGNCC	3 cut(s)	89, 208, 209
BmiI	GGNNCC	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 199
BseLI	CCNNNNNNNGG	2 cut(s)	13, 199
BseMII	CTCAG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	2 cut(s)	90, 210
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	13, 199
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	90, 210
Bsp120I	GGGCCC	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	99, 212
Bsp143I	GATC	1 cut(s)	167
BspACI	CCGC	2 cut(s)	78, 182
BspANI	GGCC	2 cut(s)	90, 210
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	1 cut(s)	175
BssMI	GATC	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	93, 234
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstSFI	CTRYAG	2 cut(s)	39, 135
BstSLI	GKGCMC	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	90, 210
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	3 cut(s)	89, 208, 209
CspCI	CAANNNNNGTGG	2 cut(s)	24, 59
CviJI	RGCY	8 cut(s)	22, 47, 90, 97, 144, 192, 205, 210
CviKI_1	RGCY	8 cut(s)	22, 47, 90, 97, 144, 192, 205, 210
DdeI	CTNAG	2 cut(s)	93, 234
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
Eco24I	GRGCYC	2 cut(s)	99, 212
EcoO109I	RGGNCCY	1 cut(s)	209
EcoT38I	GRGCYC	2 cut(s)	99, 212
FaiI	YATR	2 cut(s)	41, 87
FaqI	GGGAC	1 cut(s)	46
FriOI	GRGCYC	2 cut(s)	99, 212
GlaI	GCGC	1 cut(s)	220
GsaI	CCCAGC	1 cut(s)	209
HaeIII	GGCC	2 cut(s)	90, 210
HhaI	GCGC	1 cut(s)	221
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	175
HphI	GGTGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	22, 115, 193
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	2 cut(s)	93, 234
HpySE526I	ACGT	1 cut(s)	229
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	149, 202
LpnPI	CCDG	4 cut(s)	8, 105, 191, 198
MaeII	ACGT	1 cut(s)	229
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MhlI	GDGCHC	2 cut(s)	99, 212
MlyI	GAGTC	1 cut(s)	169
MseI	TTAA	3 cut(s)	74, 117, 150
MspA1I	CMGCKG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	216
NdeII	GATC	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	210
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	210
PspOMI	GGGCCC	1 cut(s)	208
PspPI	GGNCC	3 cut(s)	89, 208, 209
PstI	CTGCAG	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	74, 117, 150
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	3 cut(s)	89, 208, 209
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	2 cut(s)	99, 212
SetI	ASST	4 cut(s)	24, 146, 207, 232
SfcI	CTRYAG	2 cut(s)	39, 135
SgeI	CNNG	7 cut(s)	23, 35, 104, 119, 197, 206, 218
SsiI	CCGC	2 cut(s)	78, 182
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	108
Tru1I	TTAA	3 cut(s)	74, 117, 150
Tru9I	TTAA	3 cut(s)	74, 117, 150
TscAI	CASTG	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	17, 148
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.