Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010705

Physical Location & Seq

Genomic Coordinates Reverse (-)

623656 .. 624567

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCTCGTTCTCTCGCTAACGCTAAGATCCAATCCGTCTTCGGCTCCGAAAAGCTCTCGAACGCCGTTTTCAGACGAGGGTTTGCCGCCGCAGCCAAAACGGCGTTAGATGGAAGCGTTTCGACCGCGGAGATGAAGAAGAGAGCTGGGGAAGCTTCAAGCGAGAAGGCACCATGGGTTCCAGATCCTAAAACCGGTTATTACAGACCGGAAACCGTTTCTGAGGAGATTGACCCGGCTGAGCTACGAGCTATTCTCTTGAACAACAAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010150 GO:0022622 GO:0031347 GO:0031668 GO:0032101 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042631 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048364 GO:0048366 GO:0048367 GO:0048580 GO:0048583 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080134 GO:0090693 GO:0097305 GO:0099402 GO:0104004 GO:1900055 GO:1900150 GO:1900424 GO:1901700 GO:1901701 GO:1902074 GO:2000024 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

91

Amino Acids

9.83

Weight (kDa)

9.39

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_3a	PF03242	1 - 91	6.9e-32	Late embryogenesis abundant protein (LEA_3a subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02820 AT3G53770 AT3G53770 AT4G02380 AT4G02380 AT4G02380
fragaria_vesca	FvH4_2g25860
malus_domestica	MD03G1289900.v1.1
prunus_persica	Prupe.8G263100_v2.0.a1
pyrus_communis	pycom03g22940 pycom11g26960
rosa_chinensis	RchiOBHm_Chr6g0294191
rosa_multiflora	Rmu_co8423271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173560
rosa_rugosa	Rorug06G0242300
rosa_samantha	Rh6AG354500 Rh6BG361400 Rh6CG368700 Rh6DG355500
rosa_wichuraiana	Rw6G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccII	CGCG	1 cut(s)	128
AciI	CCGC	4 cut(s)	87, 90, 126, 128
AclWI	GGATC	2 cut(s)	22, 179
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgeI	ACCGGT	1 cut(s)	194
AgsI	TTSAA	2 cut(s)	159, 262
AluBI	AGCT	5 cut(s)	55, 146, 155, 244, 251
AluI	AGCT	5 cut(s)	55, 146, 155, 244, 251
AlwI	GGATC	2 cut(s)	22, 179
ApeKI	GCWGC	1 cut(s)	92
AsiGI	ACCGGT	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	118
AsuC2I	CCSGG	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	2 cut(s)	50, 117
BcnI	CCSGG	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	3 cut(s)	87, 90, 93
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	3 cut(s)	88, 91, 94
Bme1390I	CCNGG	1 cut(s)	236
BmiI	GGNNCC	3 cut(s)	46, 171, 180
BmrFI	CCNGG	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	126, 173
BsaWI	WCCGGW	2 cut(s)	194, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse118I	RCCGGY	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	126, 173
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	213, 231
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	169
BshTI	ACCGGT	1 cut(s)	194
BsiEI	CGRYCG	1 cut(s)	126
BsiSI	CCGG	3 cut(s)	195, 209, 236
BslI	CCNNNNNNNGG	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	27, 184
Bsp1720I	GCTNAGC	1 cut(s)	240
Bsp19I	CCATGG	1 cut(s)	173
BspACI	CCGC	4 cut(s)	87, 90, 126, 128
BspCNI	CTCAG	2 cut(s)	214, 232
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	3 cut(s)	46, 171, 180
BspPI	GGATC	2 cut(s)	22, 179
BspT107I	GGYRCC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	126, 173
BssMI	GATC	2 cut(s)	27, 184
BssT1I	CCWWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	134
BstDEI	CTNAG	3 cut(s)	24, 222, 240
BstDSI	CCRYGG	2 cut(s)	126, 173
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	2 cut(s)	30, 187
BstMBI	GATC	2 cut(s)	27, 184
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 101, 152
BstSCI	CCNGG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	2 cut(s)	27, 184
BstYI	RGATCY	2 cut(s)	27, 184
BtgI	CCRYGG	2 cut(s)	126, 173
Cfr10I	RCCGGY	1 cut(s)	194
Cfr42I	CCGCGG	1 cut(s)	129
CspAI	ACCGGT	1 cut(s)	194
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	9 cut(s)	5, 45, 55, 95, 146, 155, 239, 244, 251
CviKI_1	RGCY	9 cut(s)	5, 45, 55, 95, 146, 155, 239, 244, 251
DdeI	CTNAG	3 cut(s)	24, 222, 240
DpnI	GATC	2 cut(s)	29, 186
DpnII	GATC	2 cut(s)	27, 184
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	1 cut(s)	177
FaiI	YATR	1 cut(s)	175
FatI	CATG	1 cut(s)	173
Fnu4HI	GCNGC	3 cut(s)	87, 90, 93
Fsp4HI	GCNGC	3 cut(s)	87, 90, 93
GluI	GCNGC	3 cut(s)	87, 90, 93
GsaI	CCCAGC	1 cut(s)	150
HapII	CCGG	3 cut(s)	195, 209, 236
Hin1II	CATG	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	153
HpaII	CCGG	3 cut(s)	195, 209, 236
Hpy188I	TCNGA	3 cut(s)	49, 74, 223
Hpy188III	TCNNGA	3 cut(s)	58, 182, 259
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 101, 152
HpyF3I	CTNAG	3 cut(s)	24, 222, 240
Hsp92II	CATG	1 cut(s)	177
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	27, 184
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	5 cut(s)	132, 195, 208, 222, 249
Lsp1109I	GCAGC	1 cut(s)	104
MalI	GATC	2 cut(s)	29, 186
MboI	GATC	2 cut(s)	27, 184
MboII	GAAGA	3 cut(s)	31, 148, 151
MflI	RGATCY	2 cut(s)	27, 184
MnlI	CCTC	2 cut(s)	71, 217
MroXI	GAANNNNTTC	1 cut(s)	118
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	3 cut(s)	195, 209, 236
MspR9I	CCNGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	92, 101, 152
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	173
NdeII	GATC	2 cut(s)	27, 184
NlaIII	CATG	1 cut(s)	177
NlaIV	GGNNCC	3 cut(s)	46, 171, 180
PdmI	GAANNNNTTC	1 cut(s)	118
PinAI	ACCGGT	1 cut(s)	194
PkrI	GCNGC	3 cut(s)	88, 91, 94
PspFI	CCCAGC	1 cut(s)	146
PspN4I	GGNNCC	3 cut(s)	46, 171, 180
PsuI	RGATCY	2 cut(s)	27, 184
SacII	CCGCGG	1 cut(s)	129
SatI	GCNGC	3 cut(s)	87, 90, 93
Sau3AI	GATC	2 cut(s)	27, 184
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	5 cut(s)	57, 148, 157, 246, 253
Sfr303I	CCGCGG	1 cut(s)	129
SgrBI	CCGCGG	1 cut(s)	129
SsiI	CCGC	4 cut(s)	87, 90, 126, 128
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	59, 122
TauI	GCSGC	2 cut(s)	89, 92
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	149
TspGWI	ACGGA	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.