Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010705

Physical Location & Seq

Genomic Coordinates Forward (+)

19923304 .. 19924113

Gene Structure 810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTCTCAATCACTTTTCAATCTCAAAAGTTTATCTCGCTCGATCAACAACACAATCAGAATGAGAAGATACATTGTGATCACAAAAGCCTCTCAAAGGGCATATACAATTGGAAGTAGTCAAGAGAAGCCATCGTGGGCATCAGACCCTGATACCGGATACTTTAGACCCGAGACCGCTGCAAAAGAGTTAGATCCATACATTGCAAAAACCTCTCAAGTTCAAGGTAAAATGATGAGAGGAGAAGAGTTATGGTGGATGCCTGATCCTCAGACCGGATACTATAGACCAGACAATTTTGCCAGAGAGCTTGACGCAGTTGAGCTACGGTCTTTGCACTTCAACAAGAATCAAAAGACGTACGTAGTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010150 GO:0022622 GO:0031347 GO:0031668 GO:0032101 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042631 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048364 GO:0048366 GO:0048367 GO:0048580 GO:0048583 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080134 GO:0090693 GO:0097305 GO:0099402 GO:0104004 GO:1900055 GO:1900150 GO:1900424 GO:1901700 GO:1901701 GO:1902074 GO:2000024 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

124

Amino Acids

14.42

Weight (kDa)

9.56

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_3a	PF03242	29 - 66	1.5e-07	Late embryogenesis abundant protein (LEA_3a subfamily)
LEA_3a	PF03242	74 - 117	3.8e-13	Late embryogenesis abundant protein (LEA_3a subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02820 AT3G53770 AT3G53770 AT4G02380 AT4G02380 AT4G02380
fragaria_vesca	FvH4_2g25860
malus_domestica	MD03G1289900.v1.1
prunus_persica	Prupe.8G263100_v2.0.a1
pyrus_communis	pycom03g22940 pycom11g26960
rosa_chinensis	RchiOBHm_Chr6g0294191
rosa_multiflora	Rmu_co8423271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173560
rosa_rugosa	Rorug06G0242300
rosa_samantha	Rh6AG354500 Rh6BG361400 Rh6CG368700 Rh6DG355500
rosa_wichuraiana	Rw6G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	2 cut(s)	188, 260
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	96, 155, 275
AgsI	TTSAA	3 cut(s)	19, 224, 343
AluBI	AGCT	3 cut(s)	310, 325, 372
AluI	AGCT	3 cut(s)	310, 325, 372
Alw26I	GTCTC	2 cut(s)	9, 167
AlwI	GGATC	2 cut(s)	188, 260
AlwNI	CAGNNNCTG	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	139
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciVI	GTATCC	2 cut(s)	152, 272
BclI	TGATCA	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	9, 167
BfmI	CTRYAG	1 cut(s)	283
BfuI	GTATCC	2 cut(s)	152, 272
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	149, 249
BpuEI	CTTGAG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	364
BsaI	GGTCTC	1 cut(s)	167
BsaWI	WCCGGW	2 cut(s)	155, 275
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 155, 275
Bse3DI	GCAATG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	3 cut(s)	96, 155, 275
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	156, 276
BsiWI	CGTACG	1 cut(s)	360
BslI	CCNNNNNNNGG	3 cut(s)	96, 155, 275
BsmAI	GTCTC	2 cut(s)	9, 167
Bso31I	GGTCTC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	170
Bsp143I	GATC	4 cut(s)	42, 78, 193, 265
BspACI	CCGC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	283
BspPI	GGATC	2 cut(s)	188, 260
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	201
BssMI	GATC	4 cut(s)	42, 78, 193, 265
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	270
BstENI	CCTNNNNNAGG	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	264
BstKTI	GATC	4 cut(s)	45, 81, 196, 268
BstMAI	GTCTC	2 cut(s)	9, 167
BstMBI	GATC	4 cut(s)	42, 78, 193, 265
BstSFI	CTRYAG	1 cut(s)	283
BstSNI	TACGTA	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuI	GTATCC	2 cut(s)	152, 272
BtsCI	GGATG	1 cut(s)	264
CaiI	CAGNNNCTG	1 cut(s)	149
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	361
CviJI	RGCY	5 cut(s)	89, 130, 310, 325, 372
CviKI_1	RGCY	5 cut(s)	89, 130, 310, 325, 372
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	4 cut(s)	44, 80, 195, 267
DpnII	GATC	4 cut(s)	42, 78, 193, 265
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco105I	TACGTA	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	94
FaiI	YATR	5 cut(s)	103, 105, 199, 253, 285
FbaI	TGATCA	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	180
HapII	CCGG	2 cut(s)	156, 276
HgaI	GACGC	1 cut(s)	323
HinfI	GANTC	1 cut(s)	349
HpaII	CCGG	2 cut(s)	156, 276
Hpy188I	TCNGA	3 cut(s)	59, 145, 273
Hpy188III	TCNNGA	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	2 cut(s)	359, 363
HpyCH4V	TGCA	3 cut(s)	182, 206, 337
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	2 cut(s)	359, 363
Ksp22I	TGATCA	1 cut(s)	78
Kzo9I	GATC	4 cut(s)	42, 78, 193, 265
LpnPI	CCDG	6 cut(s)	162, 169, 276, 289, 303, 316
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	2 cut(s)	149, 249
MaeII	ACGT	2 cut(s)	359, 363
MalI	GATC	4 cut(s)	44, 80, 195, 267
MboI	GATC	4 cut(s)	42, 78, 193, 265
MboII	GAAGA	2 cut(s)	78, 257
MfeI	CAATTG	1 cut(s)	108
MflI	RGATCY	1 cut(s)	193
MluCI	AATT	2 cut(s)	108, 295
MnlI	CCTC	4 cut(s)	100, 223, 233, 279
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	156, 276
MunI	CAATTG	1 cut(s)	108
NdeII	GATC	4 cut(s)	42, 78, 193, 265
PfeI	GAWTC	1 cut(s)	349
Pfl23II	CGTACG	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	181
Ppu21I	YACGTR	1 cut(s)	364
PspLI	CGTACG	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	4 cut(s)	42, 78, 193, 265
SetI	ASST	7 cut(s)	215, 229, 312, 327, 362, 366, 374
SfaNI	GCATC	2 cut(s)	149, 249
SfcI	CTRYAG	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
SnaBI	TACGTA	1 cut(s)	364
Sse9I	AATT	2 cut(s)	108, 295
SsiI	CCGC	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	2 cut(s)	362, 366
TaqI	TCGA	1 cut(s)	41
TasI	AATT	2 cut(s)	108, 295
TfiI	GAWTC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	179
XagI	CCTNNNNNAGG	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.