Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010705

Physical Location & Seq

Genomic Coordinates Forward (+)

55397571 .. 55399054

Gene Structure 1484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG355500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCTCGTTCTTTCTCCAACGCTAAGCTCGTCTCCGCTCTCGTCTCCAACACAATCGCCAGACGTGGATACGCGGCGGGGTCACCAGGACTTGCGGCGGTTAGAGGAGAGGCTGCTTCTGTGTCTAGAAGCGTAAACTTGGGCAAGAAATCAGGTGAAGACAAGGTGGGGTCTGCCTTCAAGGTCTCGTGGGTCCCCAATCCCAAGACCGGAGTTTACGGACCTGAGAACCGCGCCGATGAGATCGACGCGGCCGAGCTCCGTAACGTGCTCTTGAAGAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010150 GO:0022622 GO:0031347 GO:0031668 GO:0032101 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042631 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048364 GO:0048366 GO:0048367 GO:0048580 GO:0048583 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080134 GO:0090693 GO:0097305 GO:0099402 GO:0104004 GO:1900055 GO:1900150 GO:1900424 GO:1901700 GO:1901701 GO:1902074 GO:2000024 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

95

Amino Acids

9.95

Weight (kDa)

10.16

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_3a	PF03242	1 - 94	2e-25	Late embryogenesis abundant protein (LEA_3a subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02820 AT3G53770 AT3G53770 AT4G02380 AT4G02380 AT4G02380
fragaria_vesca	FvH4_2g25860
malus_domestica	MD03G1289900.v1.1
prunus_persica	Prupe.8G263100_v2.0.a1
pyrus_communis	pycom03g22940 pycom11g26960
rosa_chinensis	RchiOBHm_Chr6g0294191
rosa_multiflora	Rmu_co8423271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173560
rosa_rugosa	Rorug06G0242300
rosa_samantha	Rh6AG354500 Rh6BG361400 Rh6CG368700 Rh6DG355500
rosa_wichuraiana	Rw6G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	38
AccII	CGCG	3 cut(s)	74, 234, 251
AciI	CCGC	7 cut(s)	36, 74, 77, 95, 98, 232, 251
AcoI	YGGCCR	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	181, 277
AjiI	CACGTC	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	2 cut(s)	28, 259
AluI	AGCT	2 cut(s)	28, 259
Alw21I	GWGCWC	2 cut(s)	261, 273
Alw26I	GTCTC	3 cut(s)	37, 49, 190
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	193, 221
AsuHPI	GGTGA	2 cut(s)	75, 167
AvaII	GGWCC	2 cut(s)	193, 221
BanII	GRGCYC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	261, 273
BbvI	GCAGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	87
BciVI	GTATCC	1 cut(s)	62
BcoDI	GTCTC	3 cut(s)	37, 49, 190
BfaI	CTAG	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	62
BisI	GCNGC	4 cut(s)	75, 96, 114, 252
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	4 cut(s)	76, 97, 115, 253
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	2 cut(s)	193, 221
BmgBI	CACGTC	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	193, 221
BmiI	GGNNCC	2 cut(s)	194, 195
BmrFI	CCNGG	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	120
BseX3I	CGGCCG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	100
Bsh1236I	CGCG	3 cut(s)	74, 234, 251
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	254
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	2 cut(s)	261, 273
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	3 cut(s)	37, 49, 190
BsmBI	CGTCTC	2 cut(s)	37, 49
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	261, 273
Bsp143I	GATC	1 cut(s)	243
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	7 cut(s)	36, 74, 77, 95, 98, 232, 251
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	3 cut(s)	74, 234, 251
BspLI	GGNNCC	2 cut(s)	194, 195
BspTNI	GGTCTC	1 cut(s)	190
BsrBI	CCGCTC	1 cut(s)	38
BssMI	GATC	1 cut(s)	243
BssSI	CACGAG	1 cut(s)	187
Bst2BI	CACGAG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	24, 225
BstEII	GGTNACC	1 cut(s)	81
BstFNI	CGCG	3 cut(s)	74, 234, 251
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	1 cut(s)	246
BstMAI	GTCTC	3 cut(s)	37, 49, 190
BstMBI	GATC	1 cut(s)	243
BstMCI	CGRYCG	1 cut(s)	255
BstNI	CCWGG	1 cut(s)	87
BstPI	GGTNACC	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	85
BstUI	CGCG	3 cut(s)	74, 234, 251
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	165
BstZI	CGGCCG	1 cut(s)	252
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	254
BtrI	CACGTC	1 cut(s)	65
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	193, 221
CseI	GACGC	1 cut(s)	257
CviJI	RGCY	5 cut(s)	5, 28, 113, 254, 259
CviKI_1	RGCY	5 cut(s)	5, 28, 113, 254, 259
DdeI	CTNAG	2 cut(s)	24, 225
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	252
EagI	CGGCCG	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	190
Eco47I	GGWCC	2 cut(s)	193, 221
Eco52I	CGGCCG	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	259
Eco91I	GGTNACC	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	193
EcoO65I	GGTNACC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	261
Esp3I	CGTCTC	2 cut(s)	37, 49
FaqI	GGGAC	1 cut(s)	179
FauI	CCCGC	1 cut(s)	70
Fnu4HI	GCNGC	4 cut(s)	75, 96, 114, 252
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	4 cut(s)	75, 96, 114, 252
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	4 cut(s)	75, 96, 114, 252
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	236
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	75, 167
Hpy166II	GTNNAC	2 cut(s)	136, 217
Hpy188III	TCNNGA	2 cut(s)	126, 274
Hpy8I	GTNNAC	2 cut(s)	136, 217
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	187
HpyCH4IV	ACGT	2 cut(s)	64, 267
HpyF3I	CTNAG	2 cut(s)	24, 225
HpySE526I	ACGT	2 cut(s)	64, 267
HspAI	GCGC	1 cut(s)	234
KflI	GGGWCCC	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	6 cut(s)	72, 73, 99, 138, 223, 237
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	2 cut(s)	64, 267
MaeIII	GTNAC	2 cut(s)	81, 263
MalI	GATC	1 cut(s)	245
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	1 cut(s)	243
MboII	GAAGA	1 cut(s)	170
MhlI	GDGCHC	2 cut(s)	261, 273
MmeI	TCCRAC	2 cut(s)	42, 72
MnlI	CCTC	2 cut(s)	98, 103
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	3 cut(s)	74, 234, 251
NdeII	GATC	1 cut(s)	243
NlaIV	GGNNCC	2 cut(s)	194, 195
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 252
PkrI	GCNGC	4 cut(s)	76, 97, 115, 253
PpuMI	RGGWCCY	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	85
PspEI	GGTNACC	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	194, 195
PspPI	GGNCC	2 cut(s)	193, 221
PspPPI	RGGWCCY	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	261
SatI	GCNGC	4 cut(s)	75, 96, 114, 252
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	2 cut(s)	193, 221
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	2 cut(s)	261, 273
SetI	ASST	8 cut(s)	30, 67, 157, 168, 186, 226, 261, 270
SinI	GGWCC	2 cut(s)	193, 221
SsiI	CCGC	7 cut(s)	36, 74, 77, 95, 98, 232, 251
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	85
TaiI	ACGT	2 cut(s)	67, 270
TaqI	TCGA	1 cut(s)	246
TauI	GCSGC	3 cut(s)	77, 98, 254
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	81
TspGWI	ACGGA	2 cut(s)	234, 251
VpaK11BI	GGWCC	2 cut(s)	193, 221
XbaI	TCTAGA	1 cut(s)	125
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.