Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010705

Physical Location & Seq

Genomic Coordinates Forward (+)

20879639 .. 20880056

Gene Structure 418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCTCGTTCTTTCTCCAACGCTAAGCTTCTCTCCGCTCTCGTCTCCAACACAATCGCCAGACGTGGATACGCGGCGGGGTCACCAGGACTTGCGGCGGTTAGAGGAGAGGTTGCTGCGGCTTCTGTTACTAGAAGCGTAAACCTAGAGAAGAAATCAGGTGAAGACAAGGTGGGGTCCGTCTTTAAGGTCTCGTGGGTCCCTAACCCCAAGACCGGCGTTTATGGACCGGAAAACCGCGCCGATGAGATCGACGTGGCTGAGCTCCGTAACGCTCTCCTGAAGAAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010150 GO:0022622 GO:0031347 GO:0031668 GO:0032101 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042631 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048364 GO:0048366 GO:0048367 GO:0048580 GO:0048583 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080134 GO:0090693 GO:0097305 GO:0099402 GO:0104004 GO:1900055 GO:1900150 GO:1900424 GO:1901700 GO:1901701 GO:1902074 GO:2000024 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

98

Amino Acids

10.25

Weight (kDa)

9.99

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_3a	PF03242	1 - 96	6.5e-25	Late embryogenesis abundant protein (LEA_3a subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02820 AT3G53770 AT3G53770 AT4G02380 AT4G02380 AT4G02380
fragaria_vesca	FvH4_2g25860
malus_domestica	MD03G1289900.v1.1
prunus_persica	Prupe.8G263100_v2.0.a1
pyrus_communis	pycom03g22940 pycom11g26960
rosa_chinensis	RchiOBHm_Chr6g0294191
rosa_multiflora	Rmu_co8423271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173560
rosa_rugosa	Rorug06G0242300
rosa_samantha	Rh6AG354500 Rh6BG361400 Rh6CG368700 Rh6DG355500
rosa_wichuraiana	Rw6G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	38
AccII	CGCG	2 cut(s)	74, 240
AciI	CCGC	7 cut(s)	36, 74, 77, 95, 98, 119, 238
AfiI	CCNNNNNNNGG	1 cut(s)	215
AjiI	CACGTC	2 cut(s)	65, 256
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	2 cut(s)	28, 265
AluI	AGCT	2 cut(s)	28, 265
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	2 cut(s)	49, 196
ApeKI	GCWGC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	3 cut(s)	177, 199, 227
AsuHPI	GGTGA	2 cut(s)	75, 173
AvaII	GGWCC	3 cut(s)	177, 199, 227
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	87
BciVI	GTATCC	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	49, 196
BfaI	CTAG	2 cut(s)	132, 146
BfuI	GTATCC	1 cut(s)	62
BisI	GCNGC	4 cut(s)	75, 96, 117, 120
BlpI	GCTNAGC	2 cut(s)	24, 261
BlsI	GCNGC	4 cut(s)	76, 97, 118, 121
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	3 cut(s)	177, 199, 227
BmgBI	CACGTC	2 cut(s)	65, 256
BmgT120I	GGNCC	3 cut(s)	177, 199, 227
BmiI	GGNNCC	3 cut(s)	178, 200, 201
BmrFI	CCNGG	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	171
Bpu1102I	GCTNAGC	2 cut(s)	24, 261
BsaI	GGTCTC	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	103
Bsh1236I	CGCG	2 cut(s)	74, 240
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	2 cut(s)	216, 230
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	49, 196
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	185
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	249
Bsp1720I	GCTNAGC	2 cut(s)	24, 261
BspACI	CCGC	7 cut(s)	36, 74, 77, 95, 98, 119, 238
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	2 cut(s)	74, 240
BspLI	GGNNCC	3 cut(s)	178, 200, 201
BspTNI	GGTCTC	1 cut(s)	196
BsrBI	CCGCTC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	215
BssMI	GATC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	193
Bst2BI	CACGAG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	24, 261
BstEII	GGTNACC	1 cut(s)	81
BstFNI	CGCG	2 cut(s)	74, 240
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	2 cut(s)	49, 196
BstMBI	GATC	1 cut(s)	249
BstNI	CCWGG	1 cut(s)	87
BstPI	GGTNACC	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	85
BstUI	CGCG	2 cut(s)	74, 240
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	171
BsuI	GTATCC	1 cut(s)	62
BtrI	CACGTC	2 cut(s)	65, 256
BtsIMutI	CAGTG	1 cut(s)	289
CfoI	GCGC	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	3 cut(s)	177, 199, 227
CviJI	RGCY	5 cut(s)	5, 28, 122, 260, 265
CviKI_1	RGCY	5 cut(s)	5, 28, 122, 260, 265
DdeI	CTNAG	2 cut(s)	24, 261
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	3 cut(s)	177, 199, 227
Eco53kI	GAGCTC	1 cut(s)	265
Eco91I	GGTNACC	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	199
EcoO65I	GGTNACC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	49
FaiI	YATR	1 cut(s)	225
FaqI	GGGAC	1 cut(s)	185
FauI	CCCGC	1 cut(s)	70
Fnu4HI	GCNGC	4 cut(s)	75, 96, 117, 120
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	4 cut(s)	75, 96, 117, 120
FspBI	CTAG	2 cut(s)	132, 146
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	4 cut(s)	75, 96, 117, 120
HapII	CCGG	2 cut(s)	216, 230
HhaI	GCGC	1 cut(s)	242
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HindIII	AAGCTT	1 cut(s)	26
HpaII	CCGG	2 cut(s)	216, 230
HphI	GGTGA	2 cut(s)	75, 173
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	64, 255
HpyF3I	CTNAG	2 cut(s)	24, 261
HpySE526I	ACGT	2 cut(s)	64, 255
HspAI	GCGC	1 cut(s)	240
KflI	GGGWCCC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	6 cut(s)	72, 73, 99, 144, 229, 243
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	132, 146
MaeII	ACGT	2 cut(s)	64, 255
MaeIII	GTNAC	3 cut(s)	81, 127, 269
MalI	GATC	1 cut(s)	251
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	1 cut(s)	249
MboII	GAAGA	2 cut(s)	163, 176
MhlI	GDGCHC	1 cut(s)	267
MmeI	TCCRAC	2 cut(s)	42, 72
MnlI	CCTC	2 cut(s)	98, 103
MseI	TTAA	1 cut(s)	186
MspI	CCGG	2 cut(s)	216, 230
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	2 cut(s)	74, 240
NdeII	GATC	1 cut(s)	249
NlaIV	GGNNCC	3 cut(s)	178, 200, 201
NmuCI	GTSAC	1 cut(s)	81
PkrI	GCNGC	4 cut(s)	76, 97, 118, 121
PpuMI	RGGWCCY	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	85
PspEI	GGTNACC	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	178, 200, 201
PspPI	GGNCC	3 cut(s)	177, 199, 227
PspPPI	RGGWCCY	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	75, 96, 117, 120
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	3 cut(s)	177, 199, 227
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	9 cut(s)	30, 67, 114, 147, 163, 174, 192, 258, 267
SinI	GGWCC	3 cut(s)	177, 199, 227
SsiI	CCGC	7 cut(s)	36, 74, 77, 95, 98, 119, 238
SspMI	CTAG	2 cut(s)	132, 146
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	85
TaiI	ACGT	2 cut(s)	67, 258
TaqI	TCGA	1 cut(s)	252
TauI	GCSGC	3 cut(s)	77, 98, 122
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	81
TspGWI	ACGGA	2 cut(s)	169, 257
VpaK11BI	GGWCC	3 cut(s)	177, 199, 227
XspI	CTAG	2 cut(s)	132, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.