Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010705

Physical Location & Seq

Genomic Coordinates Reverse (-)

1046042 .. 1047105

Gene Structure 1064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCTCGTTCTATCTCTAACGTTAAGATCGTATCTGCTTTCGTCTCTCGTGAACTCTCCAATGCTATCTTCCGACGTGGTTATGCGGCCACGGCGGCGCAAGGGAGCGTTTCGAGCGGTGGAAGAAGTGGAGCTGTTGCTTCGGCTGTGATGAAGAAGAAGGGAGTGGAAGAATCAACCCAGAAGATTTCTTGGGTTCCAGATCCCAAAACCGGTTATTACAGACCCGAAACCGGTTCCAACGAGATTGACGCGGCTGAGCTACGAGCAGCTCTCTTGAACAACAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010150 GO:0022622 GO:0031347 GO:0031668 GO:0032101 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042631 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048364 GO:0048366 GO:0048367 GO:0048580 GO:0048583 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080134 GO:0090693 GO:0097305 GO:0099402 GO:0104004 GO:1900055 GO:1900150 GO:1900424 GO:1901700 GO:1901701 GO:1902074 GO:2000024 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

97

Amino Acids

10.29

Weight (kDa)

9.99

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_3a	PF03242	5 - 78	1.2e-26	Late embryogenesis abundant protein (LEA_3a subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02820 AT3G53770 AT3G53770 AT4G02380 AT4G02380 AT4G02380
fragaria_vesca	FvH4_2g25860
malus_domestica	MD03G1289900.v1.1
prunus_persica	Prupe.8G263100_v2.0.a1
pyrus_communis	pycom03g22940 pycom11g26960
rosa_chinensis	RchiOBHm_Chr6g0294191
rosa_multiflora	Rmu_co8423271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173560
rosa_rugosa	Rorug06G0242300
rosa_samantha	Rh6AG354500 Rh6BG361400 Rh6CG368700 Rh6DG355500
rosa_wichuraiana	Rw6G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	117
AccII	CGCG	1 cut(s)	254
AciI	CCGC	4 cut(s)	86, 95, 117, 254
AclI	AACGTT	1 cut(s)	21
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	212, 233
AgeI	ACCGGT	2 cut(s)	212, 233
AgsI	TTSAA	1 cut(s)	280
AjiI	CACGTC	1 cut(s)	77
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	3 cut(s)	134, 262, 272
AluI	AGCT	3 cut(s)	134, 262, 272
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	269
AsiGI	ACCGGT	2 cut(s)	212, 233
AspLEI	GCGC	1 cut(s)	100
BauI	CACGAG	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	49
BglI	GCCNNNNNGGC	1 cut(s)	95
BisI	GCNGC	4 cut(s)	87, 96, 255, 270
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	4 cut(s)	88, 97, 256, 271
BmgBI	CACGTC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	198, 238
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
Bpu1102I	GCTNAGC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	2 cut(s)	212, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 233
Bse118I	RCCGGY	2 cut(s)	212, 233
BseDI	CCNNGG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	212, 233
BseMII	CTCAG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	89
BshTI	ACCGGT	2 cut(s)	212, 233
BsiSI	CCGG	2 cut(s)	213, 234
BslI	CCNNNNNNNGG	2 cut(s)	212, 233
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	27, 202
Bsp1720I	GCTNAGC	1 cut(s)	258
BspACI	CCGC	4 cut(s)	86, 95, 117, 254
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	198, 238
BspPI	GGATC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	117
BsrFI	RCCGGY	2 cut(s)	212, 233
BssAI	RCCGGY	2 cut(s)	212, 233
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	27, 202
BssSI	CACGAG	1 cut(s)	48
Bst2BI	CACGAG	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	2 cut(s)	30, 205
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	2 cut(s)	27, 202
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 95, 114
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	281
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	2 cut(s)	212, 233
CseI	GACGC	1 cut(s)	260
CspAI	ACCGGT	2 cut(s)	212, 233
CviJI	RGCY	7 cut(s)	5, 89, 134, 146, 257, 262, 272
CviKI_1	RGCY	7 cut(s)	5, 89, 134, 146, 257, 262, 272
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	2 cut(s)	29, 204
DpnII	GATC	2 cut(s)	27, 202
EaeI	YGGCCR	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	49
FaiI	YATR	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	87, 96, 255, 270
Fsp4HI	GCNGC	4 cut(s)	87, 96, 255, 270
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	4 cut(s)	87, 96, 255, 270
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	213, 234
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	2 cut(s)	213, 234
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	3 cut(s)	50, 200, 277
Hpy8I	GTNNAC	1 cut(s)	53
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	154
HpyCH4IV	ACGT	2 cut(s)	21, 76
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 95, 114
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	2 cut(s)	21, 76
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	27, 202
LmnI	GCTCC	2 cut(s)	105, 131
LpnPI	CCDG	4 cut(s)	194, 213, 226, 247
Lsp1109I	GCAGC	1 cut(s)	281
MaeII	ACGT	2 cut(s)	21, 76
MalI	GATC	2 cut(s)	29, 204
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	2 cut(s)	27, 202
MboII	GAAGA	6 cut(s)	61, 135, 166, 169, 182, 196
MflI	RGATCY	1 cut(s)	202
MmeI	TCCRAC	2 cut(s)	97, 264
MseI	TTAA	1 cut(s)	24
MspI	CCGG	2 cut(s)	213, 234
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	92, 95, 114
NdeII	GATC	2 cut(s)	27, 202
NlaIV	GGNNCC	2 cut(s)	198, 238
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	173
PinAI	ACCGGT	2 cut(s)	212, 233
PkrI	GCNGC	4 cut(s)	88, 97, 256, 271
Psp1406I	AACGTT	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	198, 238
PsuI	RGATCY	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	4 cut(s)	87, 96, 255, 270
Sau3AI	GATC	2 cut(s)	27, 202
SetI	ASST	5 cut(s)	24, 79, 136, 264, 274
SsiI	CCGC	4 cut(s)	86, 95, 117, 254
TaiI	ACGT	2 cut(s)	24, 79
TaqI	TCGA	1 cut(s)	113
TauI	GCSGC	3 cut(s)	89, 98, 257
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.