Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010705

Physical Location & Seq

Genomic Coordinates Forward (+)

38585392 .. 38586216

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0242300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTTGCCACACTCGCTCTAACAGCTTTCCATCAAGGTCACACCCCATCATTCAAGAAGTTGATGAACATTTGTGCAGATTGAGGTCTTCCGAGTCCACAACGACATCTTCATCAACAATAAGCCACAAACTAAGTGGTCTTCAAGACTTGCATGATTGTGTTGATAGGTTGCTTCAGTTGCCCCTCAACCAACAGGCCTTGGCGCAAGAGAAGCATCAGAAATGTGCTAATGAGCTATTAGATGGCTCCCTCAGGCTCCTGGATGTTTGTAGCACTGCCAAGGATGCCCTGTTGCAAACCAAGGAATGCATGCAGAACCTTCAATCAATAATCCGAAGAAGAAGAGGAGAAGAATCTGAAGTACTCTCAAGTGAGATTAAGAAATACTTAACCTCCAGGAAGATGGTGAAAAAGGTAATCCACAAGGCTATTGGGAATCTGAAGGGAGTGAAAAACTCTTCTCTCAACAATGACCAAGAGACTATCGCCATTGTTAGCAAGCTGAGAGATATTGAAGCAGTCTCTTTCACTATCTTCGAATCAGTGCTGTCCTTCATCTCTGGACCAAAGTCAAAGCCTAGCAGCTGGTCTTTGGTTTCCAAGATGGTGCAGTCCAAAAGAGTAGCTTGTGATGAGGAAGCAAAAGTGAATGAGTTTGCAGAGGTGGATGCTGCATTGAAGTCACTCAAGAGTGCAGACAATGCACAAAACCAGCTTAGCAATCTGGAGTCGTGCATTCAAGACCAAGAAGAAGGACTTGAGAGCCTATTTAGGCAATTGATCAAAACAAGGGTCTCCCTTCTCAACATCCTAAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010150 GO:0022622 GO:0031347 GO:0031668 GO:0032101 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042631 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048364 GO:0048366 GO:0048367 GO:0048580 GO:0048583 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080134 GO:0090693 GO:0097305 GO:0099402 GO:0104004 GO:1900055 GO:1900150 GO:1900424 GO:1901700 GO:1901701 GO:1902074 GO:2000024 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

274

Amino Acids

30.64

Weight (kDa)

8.38

Isoelectric Point (pI)

65.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPS1	PF03087	44 - 271	5.7e-85	Protein BPS1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02820 AT3G53770 AT3G53770 AT4G02380 AT4G02380 AT4G02380
fragaria_vesca	FvH4_2g25860
malus_domestica	MD03G1289900.v1.1
prunus_persica	Prupe.8G263100_v2.0.a1
pyrus_communis	pycom03g22940 pycom11g26960
rosa_chinensis	RchiOBHm_Chr6g0294191
rosa_multiflora	Rmu_co8423271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173560
rosa_rugosa	Rorug06G0242300
rosa_samantha	Rh6AG354500 Rh6BG361400 Rh6CG368700 Rh6DG355500
rosa_wichuraiana	Rw6G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	3 cut(s)	161, 381, 464
AfaI	GTAC	1 cut(s)	366
AgsI	TTSAA	6 cut(s)	56, 146, 326, 518, 682, 743
AjnI	CCWGG	2 cut(s)	261, 398
AluBI	AGCT	6 cut(s)	27, 238, 505, 588, 629, 718
AluI	AGCT	6 cut(s)	27, 238, 505, 588, 629, 718
Alw26I	GTCTC	3 cut(s)	476, 529, 802
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	585, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	780, 812
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	566
AsuHPI	GGTGA	1 cut(s)	421
AsuII	TTCGAA	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	566
AxyI	CCTNAGG	1 cut(s)	254
BbsI	GAAGAC	2 cut(s)	81, 134
BbvI	GCAGC	2 cut(s)	597, 661
BccI	CCATC	5 cut(s)	40, 56, 239, 400, 601
BciT130I	CCWGG	2 cut(s)	263, 400
BclI	TGATCA	1 cut(s)	783
BcoDI	GTCTC	3 cut(s)	476, 529, 802
BfaI	CTAG	2 cut(s)	582, 823
BisI	GCNGC	2 cut(s)	586, 675
BlpI	GCTNAGC	1 cut(s)	719
BlsI	GCNGC	2 cut(s)	587, 676
BmcAI	AGTACT	1 cut(s)	366
Bme1390I	CCNGG	2 cut(s)	263, 400
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	2 cut(s)	250, 260
BmrFI	CCNGG	2 cut(s)	263, 400
BmsI	GCATC	3 cut(s)	226, 277, 661
BoxI	GACNNNNGTC	1 cut(s)	571
BpiI	GAAGAC	2 cut(s)	81, 134
BpmI	CTGGAG	2 cut(s)	382, 749
Bpu1102I	GCTNAGC	1 cut(s)	719
Bpu14I	TTCGAA	1 cut(s)	540
BpuEI	CTTGAG	3 cut(s)	355, 674, 782
BsaI	GGTCTC	1 cut(s)	802
BsaJI	CCNNGG	3 cut(s)	201, 282, 303
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bse21I	CCTNAGG	1 cut(s)	254
BseBI	CCWGG	2 cut(s)	263, 400
BseDI	CCNNGG	3 cut(s)	201, 282, 303
BseGI	GGATG	4 cut(s)	271, 292, 676, 810
BseMII	CTCAG	2 cut(s)	268, 497
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	597, 661
BsgI	GTGCAG	3 cut(s)	97, 632, 717
BshFI	GGCC	1 cut(s)	200
BsmAI	GTCTC	3 cut(s)	476, 529, 802
BsmI	GAATGC	2 cut(s)	314, 738
BsnI	GGCC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	802
Bsp119I	TTCGAA	1 cut(s)	540
Bsp143I	GATC	1 cut(s)	783
Bsp1720I	GCTNAGC	1 cut(s)	719
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	2 cut(s)	267, 498
BspLI	GGNNCC	2 cut(s)	250, 260
BspT104I	TTCGAA	1 cut(s)	540
BspTNI	GGTCTC	1 cut(s)	802
BssECI	CCNNGG	3 cut(s)	201, 282, 303
BssMI	GATC	1 cut(s)	783
BssT1I	CCWWGG	3 cut(s)	201, 282, 303
Bst2UI	CCWGG	2 cut(s)	263, 400
Bst6I	CTCTTC	2 cut(s)	340, 466
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	3 cut(s)	7, 314, 503
BstDEI	CTNAG	4 cut(s)	134, 254, 506, 719
BstF5I	GGATG	4 cut(s)	271, 292, 676, 810
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	786
BstMAI	GTCTC	3 cut(s)	476, 529, 802
BstMBI	GATC	1 cut(s)	783
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 24, 181, 214, 287, 704
BstNI	CCWGG	2 cut(s)	263, 400
BstNSI	RCATGY	1 cut(s)	316
BstPAI	GACNNNNGTC	1 cut(s)	571
BstSCI	CCNGG	2 cut(s)	261, 398
BstV1I	GCAGC	2 cut(s)	597, 661
BstV2I	GAAGAC	2 cut(s)	81, 134
BstXI	CCANNNNNNTGG	1 cut(s)	406
Bsu36I	CCTNAGG	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	4 cut(s)	271, 292, 676, 810
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	2 cut(s)	276, 552
Cac8I	GCNNGC	3 cut(s)	7, 314, 503
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	566
Csp6I	GTAC	1 cut(s)	365
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	2 cut(s)	155, 313
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	4 cut(s)	134, 254, 506, 719
DpnI	GATC	1 cut(s)	785
DpnII	GATC	1 cut(s)	783
Eam1104I	CTCTTC	2 cut(s)	340, 466
EarI	CTCTTC	2 cut(s)	340, 466
Eco130I	CCWWGG	3 cut(s)	201, 282, 303
Eco147I	AGGCCT	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	802
Eco47I	GGWCC	1 cut(s)	566
Eco57I	CTGAAG	3 cut(s)	161, 381, 464
Eco81I	CCTNAGG	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	261, 398
EcoT14I	CCWWGG	3 cut(s)	201, 282, 303
EcoT22I	ATGCAT	1 cut(s)	314
ErhI	CCWWGG	3 cut(s)	201, 282, 303
FaeI	CATG	2 cut(s)	158, 316
FaiI	YATR	2 cut(s)	156, 314
FalI	AAGNNNNNCTT	6 cut(s)	374, 406, 613, 645, 744, 776
FatI	CATG	2 cut(s)	154, 312
FbaI	TGATCA	1 cut(s)	783
Fnu4HI	GCNGC	2 cut(s)	586, 675
FokI	GGATG	4 cut(s)	278, 299, 683, 797
Fsp4HI	GCNGC	2 cut(s)	586, 675
FspBI	CTAG	2 cut(s)	582, 823
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	2 cut(s)	586, 675
GsuI	CTGGAG	2 cut(s)	382, 749
HaeIII	GGCC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	158, 316
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	5 cut(s)	95, 356, 439, 542, 731
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	5 cut(s)	94, 222, 338, 361, 444
Hpy188III	TCNNGA	6 cut(s)	56, 146, 564, 691, 728, 743
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	5 cut(s)	332, 439, 565, 749, 812
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 24, 181, 214, 287, 704
HpyF3I	CTNAG	4 cut(s)	134, 254, 506, 719
Hsp92II	CATG	2 cut(s)	158, 316
HspAI	GCGC	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	783
Kzo9I	GATC	1 cut(s)	783
LmnI	GCTCC	2 cut(s)	254, 264
Lsp1109I	GCAGC	2 cut(s)	597, 661
LweI	GCATC	3 cut(s)	226, 277, 661
MaeI	CTAG	2 cut(s)	582, 823
MaeIII	GTNAC	2 cut(s)	39, 684
MalI	GATC	1 cut(s)	785
MboI	GATC	1 cut(s)	783
MfeI	CAATTG	1 cut(s)	779
MluCI	AATT	1 cut(s)	779
MlyI	GAGTC	2 cut(s)	104, 740
MnlI	CCTC	7 cut(s)	78, 197, 263, 341, 406, 631, 658
Mph1103I	ATGCAT	1 cut(s)	314
MseI	TTAA	2 cut(s)	381, 392
MslI	CAYNNNNRTG	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	588
MspR9I	CCNGG	2 cut(s)	263, 400
MunI	CAATTG	1 cut(s)	779
Mva1269I	GAATGC	2 cut(s)	314, 738
MvaI	CCWGG	2 cut(s)	263, 400
MwoI	GCNNNNNNNGC	6 cut(s)	15, 24, 181, 214, 287, 704
NdeII	GATC	1 cut(s)	783
NlaIII	CATG	2 cut(s)	158, 316
NlaIV	GGNNCC	2 cut(s)	250, 260
NmuCI	GTSAC	2 cut(s)	39, 684
NsiI	ATGCAT	1 cut(s)	314
NspI	RCATGY	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	540
PaeI	GCATGC	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	200
PctI	GAATGC	2 cut(s)	314, 738
PfeI	GAWTC	3 cut(s)	356, 439, 542
PfoI	TCCNGGA	2 cut(s)	261, 398
PkrI	GCNGC	2 cut(s)	587, 676
PleI	GAGTC	2 cut(s)	103, 739
PpsI	GAGTC	2 cut(s)	103, 739
PshAI	GACNNNNGTC	1 cut(s)	571
Psp6I	CCWGG	2 cut(s)	261, 398
PspGI	CCWGG	2 cut(s)	261, 398
PspN4I	GGNNCC	2 cut(s)	250, 260
PspPI	GGNCC	1 cut(s)	566
PvuII	CAGCTG	1 cut(s)	588
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	381, 392
SatI	GCNGC	2 cut(s)	586, 675
Sau3AI	GATC	1 cut(s)	783
Sau96I	GGNCC	1 cut(s)	566
ScaI	AGTACT	1 cut(s)	366
SchI	GAGTC	2 cut(s)	104, 740
ScrFI	CCNGG	2 cut(s)	263, 400
SfaNI	GCATC	3 cut(s)	226, 277, 661
SfuI	TTCGAA	1 cut(s)	540
SinI	GGWCC	1 cut(s)	566
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	3 cut(s)	370, 689, 761
SmoI	CTYRAG	3 cut(s)	370, 689, 761
SphI	GCATGC	1 cut(s)	316
Sse9I	AATT	1 cut(s)	779
SseBI	AGGCCT	1 cut(s)	200
SspMI	CTAG	2 cut(s)	582, 823
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	261, 398
StyI	CCWWGG	3 cut(s)	201, 282, 303
TaqI	TCGA	1 cut(s)	540
TasI	AATT	1 cut(s)	779
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	3 cut(s)	356, 439, 542
Tru1I	TTAA	2 cut(s)	381, 392
Tru9I	TTAA	2 cut(s)	381, 392
TscAI	CASTG	2 cut(s)	283, 552
TseFI	GTSAC	2 cut(s)	39, 684
TseI	GCWGC	2 cut(s)	585, 674
Tsp45I	GTSAC	2 cut(s)	39, 684
TspDTI	ATGAA	3 cut(s)	81, 102, 547
TspRI	CASTG	2 cut(s)	283, 552
VpaK11BI	GGWCC	1 cut(s)	566
XceI	RCATGY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	2 cut(s)	134, 431
XspI	CTAG	2 cut(s)	582, 823
ZrmI	AGTACT	1 cut(s)	366
Zsp2I	ATGCAT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.