Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010705

Physical Location & Seq

Genomic Coordinates Forward (+)

36793321 .. 36794497

Gene Structure 1177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1289900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCTCGTTCTTTCTCCAACGCAAAGTTTCTCTCTGCTCTCGTCGTCGACGGTTTCTCTAGCTCCATCTCCAGACGTGGATATGCGGCGGGTTCGCAAGGAGTTGCGTCGAGCGTGGTGAGAGGAGGAGGTGCTACGAATCCCAGAAGCGTGAACATGTCGAAGAAGAATTCCGGGGAAGAAAAGGTGGGCTCCACCTTCAAGGTCTCGTGGGTCCCCGACCCCAAAACCGGGGTTTATGGACCCGAGAACGGCACCGCGAAGATCGACGCCGCCGAGCTGCGCGCGGCGCTCTTGAAGAAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010150 GO:0022622 GO:0031347 GO:0031668 GO:0032101 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042631 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048364 GO:0048366 GO:0048367 GO:0048580 GO:0048583 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080134 GO:0090693 GO:0097305 GO:0099402 GO:0104004 GO:1900055 GO:1900150 GO:1900424 GO:1901700 GO:1901701 GO:1902074 GO:2000024 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

103

Amino Acids

10.59

Weight (kDa)

10.23

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_3a	PF03242	1 - 101	6e-30	Late embryogenesis abundant protein (LEA_3a subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02820 AT3G53770 AT3G53770 AT4G02380 AT4G02380 AT4G02380
fragaria_vesca	FvH4_2g25860
malus_domestica	MD03G1289900.v1.1
prunus_persica	Prupe.8G263100_v2.0.a1
pyrus_communis	pycom03g22940 pycom11g26960
rosa_chinensis	RchiOBHm_Chr6g0294191
rosa_multiflora	Rmu_co8423271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173560
rosa_rugosa	Rorug06G0242300
rosa_samantha	Rh6AG354500 Rh6BG361400 Rh6CG368700 Rh6DG355500
rosa_wichuraiana	Rw6G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	3 cut(s)	260, 285, 287
AciI	CCGC	5 cut(s)	86, 89, 258, 273, 287
AcsI	RAATTY	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	270
AfiI	CCNNNNNNNGG	3 cut(s)	230, 231, 251
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	202, 298
AjiI	CACGTC	1 cut(s)	77
AluBI	AGCT	2 cut(s)	63, 280
AluI	AGCT	2 cut(s)	63, 280
Alw26I	GTCTC	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	1 cut(s)	169
AspLEI	GCGC	3 cut(s)	285, 287, 292
AspS9I	GGNCC	2 cut(s)	214, 242
AsuC2I	CCSGG	2 cut(s)	175, 232
AsuHPI	GGTGA	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	214, 242
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	268
BcnI	CCSGG	2 cut(s)	175, 232
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	293
BisI	GCNGC	4 cut(s)	87, 273, 281, 288
BlsI	GCNGC	4 cut(s)	88, 274, 282, 289
Bme1390I	CCNGG	2 cut(s)	175, 232
Bme18I	GGWCC	2 cut(s)	214, 242
BmeT110I	CYCGRG	1 cut(s)	245
BmgBI	CACGTC	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	214, 242
BmiI	GGNNCC	5 cut(s)	193, 215, 216, 244, 256
BmrFI	CCNGG	2 cut(s)	175, 232
BpmI	CTGGAG	1 cut(s)	55
BpuMI	CCSGG	2 cut(s)	175, 232
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	2 cut(s)	174, 231
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 231, 251
BseDI	CCNNGG	2 cut(s)	174, 231
BseLI	CCNNNNNNNGG	3 cut(s)	230, 231, 251
BsePI	GCGCGC	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	138, 141
BseXI	GCAGC	1 cut(s)	267
Bsh1236I	CGCG	3 cut(s)	260, 285, 287
BshNI	GGYRCC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	174, 231
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	230, 231, 251
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	264
BspACI	CCGC	5 cut(s)	86, 89, 258, 273, 287
BspFNI	CGCG	3 cut(s)	260, 285, 287
BspLI	GGNNCC	5 cut(s)	193, 215, 216, 244, 256
BspT107I	GGYRCC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	174, 231
BssHII	GCGCGC	1 cut(s)	283
BssMI	GATC	1 cut(s)	264
BssNI	GRCGYC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	208
Bst2BI	CACGAG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	285
BstFNI	CGCG	3 cut(s)	260, 285, 287
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	3 cut(s)	285, 287, 292
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	173, 230
BstUI	CGCG	3 cut(s)	260, 285, 287
BstV1I	GCAGC	1 cut(s)	267
BtrI	CACGTC	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	3 cut(s)	285, 287, 292
Cfr13I	GGNCC	2 cut(s)	214, 242
CseI	GACGC	2 cut(s)	96, 278
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	4 cut(s)	5, 63, 192, 280
CviKI_1	RGCY	4 cut(s)	5, 63, 192, 280
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	214, 242
Eco88I	CYCGRG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	1 cut(s)	160
FaiI	YATR	3 cut(s)	84, 158, 240
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	1 cut(s)	156
FauI	CCCGC	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	4 cut(s)	87, 273, 281, 288
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	4 cut(s)	87, 273, 281, 288
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	3 cut(s)	284, 286, 291
GluI	GCNGC	4 cut(s)	87, 273, 281, 288
GsuI	CTGGAG	1 cut(s)	55
HaeII	RGCGCY	1 cut(s)	293
HapII	CCGG	2 cut(s)	174, 231
HgaI	GACGC	2 cut(s)	96, 278
HhaI	GCGC	3 cut(s)	285, 287, 292
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	3 cut(s)	283, 285, 290
HinP1I	GCGC	3 cut(s)	283, 285, 290
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	174, 231
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	49, 154
Hpy188III	TCNNGA	2 cut(s)	72, 295
Hpy8I	GTNNAC	2 cut(s)	49, 154
Hpy99I	CGWCG	5 cut(s)	47, 50, 53, 112, 272
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpySE526I	ACGT	1 cut(s)	76
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	3 cut(s)	283, 285, 290
KflI	GGGWCCC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	264
LmnI	GCTCC	2 cut(s)	68, 197
LpnPI	CCDG	4 cut(s)	85, 157, 187, 244
Lsp1109I	GCAGC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	76
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	4 cut(s)	175, 178, 191, 274
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	3 cut(s)	116, 119, 122
MspI	CCGG	2 cut(s)	174, 231
MspR9I	CCNGG	2 cut(s)	175, 232
MteI	GCGCNGCGC	1 cut(s)	288
MvnI	CGCG	3 cut(s)	260, 285, 287
MwoI	GCNNNNNNNGC	1 cut(s)	289
NciI	CCSGG	2 cut(s)	175, 232
NdeII	GATC	1 cut(s)	264
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	5 cut(s)	193, 215, 216, 244, 256
NmeAIII	GCCGAG	1 cut(s)	301
NspI	RCATGY	1 cut(s)	160
PauI	GCGCGC	1 cut(s)	283
PciI	ACATGT	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	4 cut(s)	88, 274, 282, 289
PpuMI	RGGWCCY	1 cut(s)	214
PscI	ACATGT	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	214
PspN4I	GGNNCC	5 cut(s)	193, 215, 216, 244, 256
PspPI	GGNCC	2 cut(s)	214, 242
PspPPI	RGGWCCY	1 cut(s)	214
PteI	GCGCGC	1 cut(s)	283
SalI	GTCGAC	1 cut(s)	47
SatI	GCNGC	4 cut(s)	87, 273, 281, 288
Sau3AI	GATC	1 cut(s)	264
Sau96I	GGNCC	2 cut(s)	214, 242
ScrFI	CCNGG	2 cut(s)	175, 232
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	7 cut(s)	65, 79, 133, 189, 200, 207, 282
SgrDI	CGTCGACG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	214, 242
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	5 cut(s)	86, 89, 258, 273, 287
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	173, 230
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	4 cut(s)	48, 110, 161, 267
TasI	AATT	1 cut(s)	169
TauI	GCSGC	3 cut(s)	89, 275, 290
TfiI	GAWTC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	214, 242
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.