Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010705

Physical Location & Seq

Genomic Coordinates Forward (+)

22134878 .. 22136011

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G263100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTCGTTCTTTCTCCAACGCTAAGCTTCTCTCTGCTCTCGTCGCCGATGGATTCTCTAGCACAATCACCAGACGTGGATATGCGGCGGGTTCTCAAGGAGTTGCGTCGAGCGTGGTTAGAGGAGGAGGTGCTACTAATCCTACAAGTGTAAACGTGGTTAAGAATTCCGGGGAAGACAAGGTGAGCTCCGCTTCAAAGGTCTCGTGGGTCCCCAACCCGAAAACCGGGTTTTACGGACCCGAGAATGGCGCCGAAGAGATCGACGCGGCCGAGCTACGTGCGGCGCTCTTGAAGAAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010150 GO:0022622 GO:0031347 GO:0031668 GO:0032101 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042631 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048364 GO:0048366 GO:0048367 GO:0048580 GO:0048583 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080134 GO:0090693 GO:0097305 GO:0099402 GO:0104004 GO:1900055 GO:1900150 GO:1900424 GO:1901700 GO:1901701 GO:1902074 GO:2000024 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

102

Amino Acids

10.35

Weight (kDa)

9.69

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02820 AT3G53770 AT3G53770 AT4G02380 AT4G02380 AT4G02380
fragaria_vesca	FvH4_2g25860
malus_domestica	MD03G1289900.v1.1
prunus_persica	Prupe.8G263100_v2.0.a1
pyrus_communis	pycom03g22940 pycom11g26960
rosa_chinensis	RchiOBHm_Chr6g0294191
rosa_multiflora	Rmu_co8423271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173560
rosa_rugosa	Rorug06G0242300
rosa_samantha	Rh6AG354500 Rh6BG361400 Rh6CG368700 Rh6DG355500
rosa_wichuraiana	Rw6G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccII	CGCG	1 cut(s)	269
AciI	CCGC	5 cut(s)	86, 89, 192, 269, 284
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	227, 248
AgsI	TTSAA	2 cut(s)	198, 295
AjiI	CACGTC	1 cut(s)	77
AluBI	AGCT	3 cut(s)	28, 189, 277
AluI	AGCT	3 cut(s)	28, 189, 277
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	270
ApoI	RAATTY	1 cut(s)	166
AspLEI	GCGC	2 cut(s)	254, 289
AspS9I	GGNCC	2 cut(s)	211, 239
AsuC2I	CCSGG	2 cut(s)	172, 229
AsuHPI	GGTGA	2 cut(s)	61, 196
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	2 cut(s)	211, 239
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	191
BauI	CACGAG	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	191
BccI	CCATC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BcnI	CCSGG	2 cut(s)	172, 229
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	60
BfoI	RGCGCY	2 cut(s)	255, 290
BisI	GCNGC	3 cut(s)	87, 270, 285
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	3 cut(s)	88, 271, 286
Bme1390I	CCNGG	2 cut(s)	172, 229
Bme18I	GGWCC	2 cut(s)	211, 239
BmeT110I	CYCGRG	1 cut(s)	242
BmgBI	CACGTC	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	211, 239
BmiI	GGNNCC	4 cut(s)	212, 213, 241, 253
BmrFI	CCNGG	2 cut(s)	172, 229
BpiI	GAAGAC	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	2 cut(s)	172, 229
BsaAI	YACGTR	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 248
BseDI	CCNNGG	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	227, 248
BseRI	GAGGAG	2 cut(s)	138, 141
BseX3I	CGGCCG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	251
BsiEI	CGRYCG	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	171, 228
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	227, 248
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	261
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	5 cut(s)	86, 89, 192, 269, 284
BspANI	GGCC	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	4 cut(s)	212, 213, 241, 253
BspT107I	GGYRCC	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	261
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	205
Bst2BI	CACGAG	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	2 cut(s)	255, 290
BstHHI	GCGC	2 cut(s)	254, 289
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	261
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstSCI	CCNGG	2 cut(s)	170, 227
BstUI	CGCG	1 cut(s)	269
BstV2I	GAAGAC	1 cut(s)	183
BstZI	CGGCCG	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	272
BtrI	CACGTC	1 cut(s)	77
CfoI	GCGC	2 cut(s)	254, 289
Cfr13I	GGNCC	2 cut(s)	211, 239
CseI	GACGC	2 cut(s)	96, 275
CviJI	RGCY	5 cut(s)	5, 28, 189, 272, 277
CviKI_1	RGCY	5 cut(s)	5, 28, 189, 272, 277
DdeI	CTNAG	1 cut(s)	24
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	189
EclXI	CGGCCG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	211, 239
Eco52I	CGGCCG	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	191
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
FaiI	YATR	1 cut(s)	84
FaqI	GGGAC	1 cut(s)	197
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	87, 270, 285
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	3 cut(s)	87, 270, 285
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	2 cut(s)	253, 288
GluI	GCNGC	3 cut(s)	87, 270, 285
HaeII	RGCGCY	2 cut(s)	255, 290
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	2 cut(s)	171, 228
HgaI	GACGC	2 cut(s)	96, 275
HhaI	GCGC	2 cut(s)	254, 289
Hin1I	GRCGYC	1 cut(s)	252
Hin6I	GCGC	2 cut(s)	252, 287
HinP1I	GCGC	2 cut(s)	252, 287
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	2 cut(s)	171, 228
HphI	GGTGA	2 cut(s)	61, 196
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	3 cut(s)	47, 112, 269
HpyCH4IV	ACGT	3 cut(s)	76, 156, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	3 cut(s)	76, 156, 280
Hsp92I	GRCGYC	1 cut(s)	252
HspAI	GCGC	2 cut(s)	252, 287
KasI	GGCGCC	1 cut(s)	251
KflI	GGGWCCC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	3 cut(s)	85, 184, 241
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	3 cut(s)	76, 156, 280
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	2 cut(s)	188, 269
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	1 cut(s)	166
Mly113I	GGCGCC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	3 cut(s)	116, 119, 122
MseI	TTAA	1 cut(s)	162
MspI	CCGG	2 cut(s)	171, 228
MspR9I	CCNGG	2 cut(s)	172, 229
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	44
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	2 cut(s)	172, 229
NdeII	GATC	1 cut(s)	261
NlaIV	GGNNCC	4 cut(s)	212, 213, 241, 253
NmeAIII	GCCGAG	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	3 cut(s)	88, 271, 286
PluTI	GGCGCC	1 cut(s)	255
Ppu21I	YACGTR	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	211
PspN4I	GGNNCC	4 cut(s)	212, 213, 241, 253
PspPI	GGNCC	2 cut(s)	211, 239
PspPPI	RGGWCCY	1 cut(s)	211
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	3 cut(s)	87, 270, 285
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	2 cut(s)	211, 239
ScrFI	CCNGG	2 cut(s)	172, 229
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	9 cut(s)	30, 79, 133, 159, 186, 191, 204, 279, 283
SfoI	GGCGCC	1 cut(s)	253
SinI	GGWCC	2 cut(s)	211, 239
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	5 cut(s)	86, 89, 192, 269, 284
SspDI	GGCGCC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	60
SstI	GAGCTC	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	170, 227
TaiI	ACGT	3 cut(s)	79, 159, 283
TaqI	TCGA	2 cut(s)	110, 264
TasI	AATT	1 cut(s)	166
TauI	GCSGC	3 cut(s)	89, 272, 287
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	252
VpaK11BI	GGWCC	2 cut(s)	211, 239
XapI	RAATTY	1 cut(s)	166
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.