Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010960

Physical Location & Seq

Genomic Coordinates Reverse (-)

710018 .. 711857

Gene Structure 1840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03055.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAACACTAAGCTATCACTTTCTCAGACCAAAATCTTCACTTTCACAACTTGGTTCAACGATACTCGAAGTGGCTTAGATAGACGCTCAAGCATTTCCCCGACTCTCTGTTCAAAGCCCGTCTACTCCGGAAAACTCAAGGCTGCAAAAGAGACAGCAAGAATCGAGACATCGAATACGAAGAATGCGAGTATTGAGGACAGCTTCTTCTCGAAAATTGCAATTAATTATCTATCAAAGAATCTTCAAGACGCAGCTGGGATTAGTAGTAGCAGTAAGAGTACCGATTATGATAGGTTAGTGGATACGGCAACTAGGGTTTCGCGTAACTTTGACACCAAGCAACAACATGAGTTTGTTCTTAGCTCTTTGGACAGAGCATTACCGACAGTAATAAGCTCCTTGATCAAAATGGCATTTCCACCTTCAAAAGTCTCGAGGGAGCTCTTCGCTCTATTCACGACAATATCTTTCGCTTGGCTTGTTGGACCTTCAGAGGTGAGGGAGACTGAGGTTAATGGAAGAAAAGAGAAGAGTGTTGTGTACATAGAGAAGTGCAGGTTTCTTGAACAGTCAAATTGTGTTGGCATGTGCACTCATATTTGTAAAATTCCATCCCAAATCTTCATCAAAAACTCACTGGGAATGCCTATCTACATGGAGCCCGATTTTAATGATCTTAGCTGTAAAATGATGTTTGGTCGGGAGCCTCCAGAGATCGAAGATGATCCTGCTATGAAACAACCATGCTTTGAATTCTGCAAATCAAACAAAAGCTACGGTGTGAAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009653 GO:0009987 GO:0010016 GO:0010223 GO:0010346 GO:0010817 GO:0016106 GO:0016114 GO:0016853 GO:0016859 GO:0018130 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

DUF4033

Protein Analysis

264

Amino Acids

29.79

Weight (kDa)

8.94

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
D27-like_C	PF13225	160 - 241	8.7e-35	Beta-carotene isomerase D27-like, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03055 AT1G03055
fragaria_vesca	FvH4_2g22790
malus_domestica	MD03G1256200.v1.1 MD11G1277000.v1.1
prunus_persica	Prupe.8G233300_v2.0.a1
pyrus_communis	pycom11g24500
rosa_chinensis	RchiOBHm_Chr6g0289711
rosa_laevigata	RLG00000012273
rosa_multiflora	Rmu_sc0005640.1_g000030
rosa_roxburghii	Rroxscaffold_7G00177620 Rroxscaffold_7G00178120
rosa_rugosa	Rorug06G0205900 Rorug06G0206000 Rorug06G0206000
rosa_samantha	Rh6AG317600 Rh6BG325200 Rh6CG330800 Rh6DG316500
rosa_wichuraiana	Rw6G027390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	325
AccIII	TCCGGA	1 cut(s)	128
AclWI	GGATC	1 cut(s)	722
AcsI	RAATTY	2 cut(s)	609, 755
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	2 cut(s)	283, 545
AgsI	TTSAA	6 cut(s)	58, 114, 248, 429, 569, 755
AluBI	AGCT	8 cut(s)	13, 204, 257, 366, 399, 445, 684, 777
AluI	AGCT	8 cut(s)	13, 204, 257, 366, 399, 445, 684, 777
Alw21I	GWGCWC	2 cut(s)	447, 596
Alw26I	GTCTC	4 cut(s)	146, 161, 439, 500
Alw44I	GTGCAC	1 cut(s)	592
AlwI	GGATC	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	436
Aor13HI	TCCGGA	1 cut(s)	128
ApaLI	GTGCAC	1 cut(s)	592
ApeKI	GCWGC	2 cut(s)	143, 254
ApoI	RAATTY	2 cut(s)	609, 755
AseI	ATTAAT	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	511
AvaI	CYCGRG	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	596
BanII	GRGCYC	2 cut(s)	447, 666
Bbv12I	GWGCWC	2 cut(s)	447, 596
BbvI	GCAGC	2 cut(s)	130, 266
BccI	CCATC	1 cut(s)	622
BceAI	ACGGC	1 cut(s)	324
BciVI	GTATCC	1 cut(s)	298
BclI	TGATCA	1 cut(s)	405
BcoDI	GTCTC	4 cut(s)	146, 161, 439, 500
BfaI	CTAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	549
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	2 cut(s)	144, 255
BlsI	GCNGC	2 cut(s)	145, 256
Bme18I	GGWCC	1 cut(s)	488
BmeT110I	CYCGRG	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	2 cut(s)	663, 708
BmrI	ACTGGG	1 cut(s)	650
BmuI	ACTGGG	1 cut(s)	650
BpmI	CTGGAG	1 cut(s)	696
BpuEI	CTTGAG	2 cut(s)	73, 122
BsaWI	WCCGGW	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	128
BseGI	GGATG	1 cut(s)	614
BseMII	CTCAG	2 cut(s)	38, 501
BseNI	ACTGG	1 cut(s)	645
BseSI	GKGCMC	1 cut(s)	596
BseXI	GCAGC	2 cut(s)	130, 266
BseYI	CCCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	577
Bsh1236I	CGCG	1 cut(s)	325
BsiHKAI	GWGCWC	2 cut(s)	447, 596
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	129
BsmAI	GTCTC	4 cut(s)	146, 161, 439, 500
BsmI	GAATGC	2 cut(s)	190, 651
BsoBI	CYCGRG	1 cut(s)	436
Bsp1286I	GDGCHC	3 cut(s)	447, 596, 666
Bsp13I	TCCGGA	1 cut(s)	128
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	4 cut(s)	405, 676, 717, 727
BspCNI	CTCAG	2 cut(s)	37, 502
BspEI	TCCGGA	1 cut(s)	128
BspFNI	CGCG	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	663, 708
BspMI	ACCTGC	1 cut(s)	549
BspPI	GGATC	1 cut(s)	722
BspQI	GCTCTTC	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	1 cut(s)	645
BssMI	GATC	4 cut(s)	405, 676, 717, 727
Bst4CI	ACNGT	3 cut(s)	391, 573, 782
Bst6I	CTCTTC	2 cut(s)	452, 527
BstAUI	TGTACA	1 cut(s)	543
BstDEI	CTNAG	6 cut(s)	9, 24, 76, 362, 510, 680
BstF5I	GGATG	1 cut(s)	614
BstFNI	CGCG	1 cut(s)	325
BstKTI	GATC	4 cut(s)	408, 679, 720, 730
BstMAI	GTCTC	4 cut(s)	146, 161, 439, 500
BstMBI	GATC	4 cut(s)	405, 676, 717, 727
BstNSI	RCATGY	1 cut(s)	592
BstSLI	GKGCMC	1 cut(s)	596
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	130, 266
BsuI	GTATCC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	614
BtsIMutI	CAGTG	1 cut(s)	638
BveI	ACCTGC	1 cut(s)	549
Cfr13I	GGNCC	1 cut(s)	488
CseI	GACGC	2 cut(s)	93, 260
Csp6I	GTAC	2 cut(s)	282, 544
CviAII	CATG	4 cut(s)	350, 589, 658, 747
CviQI	GTAC	2 cut(s)	282, 544
DdeI	CTNAG	6 cut(s)	9, 24, 76, 362, 510, 680
DpnI	GATC	4 cut(s)	407, 678, 719, 729
DpnII	GATC	4 cut(s)	405, 676, 717, 727
Eam1104I	CTCTTC	2 cut(s)	452, 527
EarI	CTCTTC	2 cut(s)	452, 527
Ecl136II	GAGCTC	1 cut(s)	445
Eco24I	GRGCYC	2 cut(s)	447, 666
Eco47I	GGWCC	1 cut(s)	488
Eco53kI	GAGCTC	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	755
EcoT38I	GRGCYC	2 cut(s)	447, 666
FaeI	CATG	4 cut(s)	353, 592, 661, 750
FaiI	YATR	8 cut(s)	291, 351, 548, 590, 600, 659, 737, 748
FatI	CATG	4 cut(s)	349, 588, 657, 746
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	144, 255
FokI	GGATG	1 cut(s)	601
FriOI	GRGCYC	2 cut(s)	447, 666
Fsp4HI	GCNGC	2 cut(s)	144, 255
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	2 cut(s)	144, 255
GsaI	CCCAGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	696
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	2 cut(s)	93, 260
Hin1II	CATG	4 cut(s)	353, 592, 661, 750
HinfI	GANTC	3 cut(s)	103, 162, 241
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	3 cut(s)	124, 544, 594
Hpy188I	TCNGA	2 cut(s)	27, 496
Hpy188III	TCNNGA	9 cut(s)	129, 166, 211, 248, 436, 460, 566, 704, 713
Hpy8I	GTNNAC	3 cut(s)	124, 544, 594
HpyAV	CCTTC	2 cut(s)	435, 501
HpyCH4III	ACNGT	3 cut(s)	391, 573, 782
HpyCH4V	TGCA	5 cut(s)	146, 221, 558, 594, 762
HpyF3I	CTNAG	6 cut(s)	9, 24, 76, 362, 510, 680
Hsp92II	CATG	4 cut(s)	353, 592, 661, 750
Kpn2I	TCCGGA	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	4 cut(s)	405, 676, 717, 727
LguI	GCTCTTC	1 cut(s)	452
LmnI	GCTCC	4 cut(s)	404, 442, 661, 706
LpnPI	CCDG	6 cut(s)	142, 243, 544, 626, 726, 744
Lsp1109I	GCAGC	2 cut(s)	130, 266
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	4 cut(s)	407, 678, 719, 729
MboI	GATC	4 cut(s)	405, 676, 717, 727
MboII	GAAGA	9 cut(s)	28, 193, 199, 236, 439, 534, 544, 616, 734
MhlI	GDGCHC	3 cut(s)	447, 596, 666
MluCI	AATT	6 cut(s)	216, 222, 226, 577, 609, 755
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	466
MnlI	CCTC	6 cut(s)	190, 432, 490, 495, 505, 720
MroI	TCCGGA	1 cut(s)	128
MseI	TTAA	3 cut(s)	225, 516, 672
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	129
Mva1269I	GAATGC	2 cut(s)	190, 651
MvnI	CGCG	1 cut(s)	325
NdeII	GATC	4 cut(s)	405, 676, 717, 727
NlaIII	CATG	4 cut(s)	353, 592, 661, 750
NlaIV	GGNNCC	2 cut(s)	663, 708
NspI	RCATGY	1 cut(s)	592
PaeR7I	CTCGAG	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PctI	GAATGC	2 cut(s)	190, 651
PfeI	GAWTC	2 cut(s)	162, 241
PkrI	GCNGC	2 cut(s)	145, 256
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PshBI	ATTAAT	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	663, 708
PspPI	GGNCC	1 cut(s)	488
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	283, 545
RsaNI	GTAC	2 cut(s)	282, 544
SacI	GAGCTC	1 cut(s)	447
SapI	GCTCTTC	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	225, 516, 672
SatI	GCNGC	2 cut(s)	144, 255
Sau3AI	GATC	4 cut(s)	405, 676, 717, 727
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	97
SduI	GDGCHC	3 cut(s)	447, 596, 666
Sfr274I	CTCGAG	1 cut(s)	436
SinI	GGWCC	1 cut(s)	488
SlaI	CTCGAG	1 cut(s)	436
SmlI	CTYRAG	3 cut(s)	88, 137, 436
SmoI	CTYRAG	3 cut(s)	88, 137, 436
Sse9I	AATT	6 cut(s)	216, 222, 226, 577, 609, 755
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	447
TaaI	ACNGT	3 cut(s)	391, 573, 782
TaqI	TCGA	6 cut(s)	67, 165, 173, 212, 437, 720
TasI	AATT	6 cut(s)	216, 222, 226, 577, 609, 755
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	2 cut(s)	162, 241
Tru1I	TTAA	3 cut(s)	225, 516, 672
Tru9I	TTAA	3 cut(s)	225, 516, 672
TscAI	CASTG	1 cut(s)	645
TseI	GCWGC	2 cut(s)	143, 254
TspDTI	ATGAA	3 cut(s)	17, 616, 752
TspRI	CASTG	1 cut(s)	645
VneI	GTGCAC	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	488
VspI	ATTAAT	1 cut(s)	225
XapI	RAATTY	2 cut(s)	609, 755
XceI	RCATGY	1 cut(s)	592
XhoI	CTCGAG	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.