Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010960

Physical Location & Seq

Genomic Coordinates Forward (+)

32848381 .. 32857784

Gene Structure 9404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0206000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3429 bp

ATGTGTTCTTTAATCACTACTCAAGGAGCCTCTTCCTCTTCCTCTTCCTTTTCCACCAACTCATCGGAATATGATGTCTTCCTCAGTTTCAGGGGTGAAGATACACGTCATAACTTTACAGATCATCTGTACAACAATTTGGTTCAGAAGGGAATTAAGACCTTCATAGATGATGAGCTTAGAAGAGGAGAAGATATATCATCGGCGCTTCTCAAAGCCATTGAACAGTCGAGGAGTTCTATCATTGTATTCTCACAAAATTATGCATCATCGACTTGGTGCTTGGACGAGCTGGTTAAGATCCTCCAATGCAAAGAATCAAAGCAACAAATGGTTTGGCCAATTTTTTACAAAGTGGATCCGTCCGATGTACGAAACCAAACTGGTTGCTTTGTTGAGGCATTTTCTTCCCATGAATGCAGATTCAAGAATAATATGGAGAAGGTGTTGAGATGGAAGAAAGCTCTTAGGGAAGCAGCCAATTTGTCTGGGTGGACCTTAGCTGACAGGCATGAATATAAATTTATTCATGATATTGTTGAAGTGGTTTCACTACAAGTAGTAAATTGTACATATTTGAATGTGGCGAAATACCCAGTTGGAATACAGTCTCGTTTGCAAGATATGAATGAGCTCTTATGTGTAGGGGACACTGATATTCGCATGATAGGGGTATGGGGAACTGGTGGTATAGGTAAGACCACAATCGTTAAAGCTGTGTACAATTCAATCATTCATAAGTTTGAAGGTGGCTGCTTTTTGGAAAGTGTTAGAGAAAGATCAATTCCTTATGGAGGCCTAGTGGAACTACAAAATTGTCTTCTTTCTACGATTTTGGGGTGGAAAGAATTGAAGGTGACCAATGCTGATAGTGGGATTAGTGTGATAAAGCAAAGGTTGCGCCACAAAAGGATCCTTTTGATTCTTGATGATGTGAATCAATTAAACCAGTTAGACAAATTGGTTGGAGAGCGTGATTGGTTTGGCTCGGGCAGTAGAATTATCATAACAACAAGAGATAAGCATTTGCTAACTGCTCATCATGTTCATCTAATCTACAAGGTCAAGGAATTAGATCATCATGAAGCTTTAGAGCTCTTCAGTTGGAATGCTTTCGCCGGAAATATGCCGGCAGATGATTATGTGGAACTAGCAAGTACTGTAGTACAATATGGTCAAGGTCTTCCATTAGCTTTGATAATTTTAGGTTCACATCTATGTGGTAGAAGTACAAATCAATGGCAAGCAGCATTGGATAGTTACAAAAGAGTTCCCAACCAAGAGATTCAAGGAATTTTCAAAATCAGTTATGATGAACTAGATGTTCTGGTGAAAGAAGTTTTCCTAGACATTGCATGTTTCTTCAAAGGTAAAGACAAGAGCTATGTGGTACAAATACTGGAAGGTTGTGACCTCAACCCTTTTTATGGTATTGAAGTACTCGCAGAAAAGGCCCTCCTAAATATTGATAACAAAAATCATATATGGATGCATGACTTGCTGGAAGAAATGGGTAAAGATATAGTTCGCCAAGAATCACCAAGAGAGCCTGGCGAGCGTAGCAGATTATGGTTTGAAGAGGATGTACATCATGTTCTAACTGAAAACACAGGTACAAACAAAATTAAAGGTATCATCGTGAAGTTGGCTGAACCATATGAGATACACTTGAAAGCTGAAAGCTTCTCAAAGATGAAAAATCTTCAAATTTTCATAAATTGCAATGCATCCTTTACTGGGGAAGTCGAGTATCTTCCAAACGAGTTGAGGTTCCTTGATTGGCCAAAATGTCCATTGAAATCCCTGCCATCTAATTTTAGTCCAAGGAAACTTATAAAACTCAACATGCCTTACAGCTACATGTCACAACTCGGACATGGATTTAAGAACTTGCAAAATTTGAAAACTATGAATTTGGAAGGCTGCAAATTCCTAACAAAAGTGGTCAACTTTGCGGGACTTCCAAACTTAGAGAACTTGAATCTAAAGTACTGTACAAGTTTAGTTGAGGTTGATCCTTCGGTTGGATTCCTTTATAAGCTTGTTGACTTGAGTCTTGTGGGATGCTACAAACTTGCAATGTTTCCTAGGAGAGCCAGCTGGAAATCTATGCAAAAGATAAATCTTCAAGATTGCAGAAGCTTGAAGCATTTTCCTGAAATTGTGGGCAAGATGGAATTCTTAACTTTCATGATTCTATCCGGCTCTGGTATCAGAGAATTGCCATCATCAATTGGAAATCTCATTGGCCTTGAAGATCTGTACTTAGAAAGATGTGAAAACCTTACAAACTTGCCATGCAGCATTTATGAGTTGCGACATCTTGAGTTTGTGTCTTTCTCTGAATGCCCAAAACTTGTTAACTTCCCAATTAAAGTGACTCCAGAGGTTTCTTGGAGTGCAGAATCGTTTCTTCCGGCGCTTCCCAAGCTAATGCTAATTGAATTGGGAGGATGTAGTTTAGCAGAAAGTGAATTCCTTGTCAGTCTTGGTTGTGTGTCCACATTATTACAACTTGATTTGTCAAGAAACAGTTTTGTTAGTCTTCCTGCATGTTTAAGCAAATTTGTCAACTTGCGAGAGCTTAACTTGAGTGGTTGCGACAGGCTTCGAGAAATTCCAGAACTTCCACCAAAGGTGGAGTTGGTCAATGCTAGGGGCTGTGTATCACTAGAAAGATTTTCAAAGTTATCAAACATTTTGGAACACAAGGAGTCACAGACGATTTGTCGAATGGACTTGTCCAACTGTCATAGACTGTATAGCACTCTGGCTCATGATGTGGCAAAGAAGAAAAATATCATACAAAATCCGGTGGAGTCTTTTTGCTCTCTTTTTCTCACTCATCATCGGTTTAGATTCAGAGTTGTGTTTTCAGGAAGTGAAGTTCCAAAATGTTTCCACGATAGAAAAGATTTGAAGGATATCGAATTCCCATATCAATATTCCTCCCCCTTTGGGGAGGAATATCCAACATACATTGCTTCTGGGATGCATAAGTTTCTTATTGAAATCTCTCAAAATCTCGACTGGTTTAACTCAGGATTGGCTGTCTGTGGTGCTGTCGAATATACAGAGAATATATCTGGTACTCGTCATTTGACAGTCGAAATTCGTATCAGTGACTTTGAGGATACGGTAAGTCTTTATTCAACAGAGATAGAGTCAGATGAAATGTGGTTGCAATACATCCCCTTCTCTACATTCATTGATCGATATTCTTGGTCACATTTATGGGGTCATCACGAGTTTGCTGCGCCTGTGAACTGTCGAGTTAGTGTTGACTATAGTAGCACAAGTTCTATGCGTTTCAAAAGCTTTGGGGTCCATCTAGTAACACCACATGATGAAGACACGACCTCTGTACAGGAAGTCCTTGAAGATATTGGTACATCTGCAGCAAATCCTCGAAAGAGGAAGACCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009653 GO:0009987 GO:0010016 GO:0010223 GO:0010346 GO:0010817 GO:0016106 GO:0016114 GO:0016853 GO:0016859 GO:0018130 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

DUF4033

Protein Analysis

1142

Amino Acids

130.19

Weight (kDa)

6.19

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	24 - 184	3.2e-56	TIR domain
TIR_2	PF13676	26 - 121	7.7e-16	TIR domain
NB-ARC	PF00931	217 - 374	3.4e-18	NB-ARC domain
WHD_ROQ1	PF23282	445 - 513	1.4e-19	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	694 - 785	6.8e-08	Leucine-rich repeat region
LRR_13	PF23286	703 - 903	1.1e-20	Disease resistance protein RPS4B-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03055 AT1G03055
fragaria_vesca	FvH4_2g22790
malus_domestica	MD03G1256200.v1.1 MD11G1277000.v1.1
prunus_persica	Prupe.8G233300_v2.0.a1
pyrus_communis	pycom11g24500
rosa_chinensis	RchiOBHm_Chr6g0289711
rosa_laevigata	RLG00000012273
rosa_multiflora	Rmu_sc0005640.1_g000030
rosa_roxburghii	Rroxscaffold_7G00177620 Rroxscaffold_7G00178120
rosa_rugosa	Rorug06G0205900 Rorug06G0206000 Rorug06G0206000
rosa_samantha	Rh6AG317600 Rh6BG325200 Rh6CG330800 Rh6DG316500
rosa_wichuraiana	Rw6G027390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1835, 2037
AciI	CCGC	1 cut(s)	1955
AclWI	GGATC	6 cut(s)	295, 353, 366, 907, 920, 2009
AcoI	YGGCCR	2 cut(s)	338, 1781
AcuI	CTGAAG	1 cut(s)	1084
AfiI	CCNNNNNNNGG	6 cut(s)	794, 1427, 1737, 2024, 2958, 2959
AflIII	ACRYGT	2 cut(s)	104, 1860
AhdI	GACNNNNNGTC	1 cut(s)	2727
AjiI	CACGTC	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	1549
AloI	GAACNNNNNNTCC	2 cut(s)	2871, 2903
Alw21I	GWGCWC	2 cut(s)	636, 1098
Alw26I	GTCTC	1 cut(s)	615
AlwI	GGATC	6 cut(s)	295, 353, 366, 907, 920, 2009
Ama87I	CYCGRG	1 cut(s)	988
AoxI	GGCC	5 cut(s)	338, 796, 1452, 1781, 2248
ApeKI	GCWGC	7 cut(s)	476, 753, 1247, 1923, 2301, 3254, 3398
Asp700I	GAANNNNTTC	2 cut(s)	1112, 2409
AspA2I	CCTAGG	1 cut(s)	2087
AspLEI	GCGC	4 cut(s)	208, 903, 2422, 3259
AspS9I	GGNCC	3 cut(s)	495, 1453, 3325
AsuHPI	GGTGA	4 cut(s)	107, 868, 1342, 1530
AvaI	CYCGRG	1 cut(s)	988
AvaII	GGWCC	2 cut(s)	495, 3325
AvrII	CCTAGG	1 cut(s)	2087
BalI	TGGCCA	2 cut(s)	340, 1783
BamHI	GGATCC	2 cut(s)	358, 912
BanII	GRGCYC	2 cut(s)	636, 1098
BarI	GAAGNNNNNNTAC	2 cut(s)	1569, 1601
BauI	CACGAG	1 cut(s)	3245
BbsI	GAAGAC	6 cut(s)	70, 812, 1175, 2537, 3357, 3425
Bbv12I	GWGCWC	2 cut(s)	636, 1098
BbvI	GCAGC	7 cut(s)	488, 740, 1259, 1910, 2313, 3241, 3410
BccI	CCATC	5 cut(s)	447, 1816, 2167, 2233, 3336
BcgI	CGANNNNNNTGC	2 cut(s)	3236, 3270
BciT130I	CCWGG	1 cut(s)	1551
BciVI	GTATCC	1 cut(s)	3127
BcoDI	GTCTC	1 cut(s)	615
BfaI	CTAG	8 cut(s)	800, 1151, 1319, 1346, 2088, 2655, 2672, 3332
BfmI	CTRYAG	3 cut(s)	1161, 3286, 3396
BfoI	RGCGCY	2 cut(s)	209, 2423
BfuI	GTATCC	1 cut(s)	3127
BglII	AGATCT	1 cut(s)	2257
BisI	GCNGC	7 cut(s)	477, 754, 1248, 1924, 2302, 3255, 3399
BlnI	CCTAGG	1 cut(s)	2087
BlsI	GCNGC	7 cut(s)	478, 755, 1249, 1925, 2303, 3256, 3400
BmcAI	AGTACT	3 cut(s)	1159, 1440, 1991
Bme1390I	CCNGG	1 cut(s)	1551
Bme18I	GGWCC	2 cut(s)	495, 3325
BmeRI	GACNNNNNGTC	1 cut(s)	2727
BmeT110I	CYCGRG	1 cut(s)	988
BmgBI	CACGTC	1 cut(s)	107
BmgT120I	GGNCC	3 cut(s)	495, 1453, 3325
BmiI	GGNNCC	5 cut(s)	28, 360, 914, 1772, 3326
BmrFI	CCNGG	1 cut(s)	1551
BmrI	ACTGGG	2 cut(s)	590, 1746
BmsI	GCATC	5 cut(s)	275, 1479, 1736, 2054, 2982
BmuI	ACTGGG	2 cut(s)	590, 1746
BoxI	GACNNNNGTC	1 cut(s)	2052
BpiI	GAAGAC	6 cut(s)	70, 812, 1175, 2537, 3357, 3425
BpmI	CTGGAG	1 cut(s)	2367
Bpu10I	CCTNAGC	1 cut(s)	499
BpuEI	CTTGAG	4 cut(s)	6, 2071, 2345, 2611
Bsa29I	ATCGAT	1 cut(s)	3214
BsaBI	GATNNNNATC	2 cut(s)	936, 1587
BsaJI	CCNNGG	2 cut(s)	1823, 2087
BsaWI	WCCGGW	1 cut(s)	2812
BsaXI	ACNNNNNCTCC	4 cut(s)	431, 461, 786, 816
Bsc4I	CCNNNNNNNGG	6 cut(s)	794, 1427, 1737, 2024, 2958, 2959
Bse118I	RCCGGY	1 cut(s)	1129
Bse1I	ACTGG	7 cut(s)	388, 596, 688, 949, 1404, 1741, 3035
Bse3DI	GCAATG	4 cut(s)	1350, 1729, 2085, 2979
Bse8I	GATNNNNATC	2 cut(s)	936, 1587
BseBI	CCWGG	1 cut(s)	1551
BseCI	ATCGAT	1 cut(s)	3214
BseDI	CCNNGG	2 cut(s)	1823, 2087
BseGI	GGATG	7 cut(s)	1494, 1588, 1727, 2069, 2459, 2997, 3189
BseJI	GATNNNNATC	2 cut(s)	936, 1587
BseLI	CCNNNNNNNGG	6 cut(s)	794, 1427, 1737, 2024, 2958, 2959
BseMI	GCAATG	4 cut(s)	1350, 1729, 2085, 2979
BseMII	CTCAG	2 cut(s)	97, 3054
BseNI	ACTGG	7 cut(s)	388, 596, 688, 949, 1404, 1741, 3035
BseRI	GAGGAG	2 cut(s)	201, 247
BseXI	GCAGC	7 cut(s)	488, 740, 1259, 1910, 2313, 3241, 3410
BsgI	GTGCAG	1 cut(s)	2421
BshFI	GGCC	5 cut(s)	340, 798, 1454, 1783, 2250
BshVI	ATCGAT	1 cut(s)	3214
BsiHKAI	GWGCWC	2 cut(s)	636, 1098
BsiHKCI	CYCGRG	1 cut(s)	988
BsiSI	CCGG	5 cut(s)	1119, 1130, 2202, 2417, 2813
BslFI	GGGAC	2 cut(s)	662, 1971
BslI	CCNNNNNNNGG	6 cut(s)	794, 1427, 1737, 2024, 2958, 2959
BsmAI	GTCTC	1 cut(s)	615
BsmFI	GGGAC	2 cut(s)	662, 1971
BsmI	GAATGC	3 cut(s)	422, 1114, 2351
BsnI	GGCC	5 cut(s)	340, 798, 1454, 1783, 2250
BsoBI	CYCGRG	1 cut(s)	988
Bsp1286I	GDGCHC	2 cut(s)	636, 1098
Bsp1407I	TGTACA	6 cut(s)	129, 569, 720, 1585, 1994, 3364
Bsp143I	GATC	9 cut(s)	121, 300, 358, 779, 912, 1075, 2014, 2257, 3211
BspACI	CCGC	1 cut(s)	1955
BspANI	GGCC	5 cut(s)	340, 798, 1454, 1783, 2250
BspCNI	CTCAG	2 cut(s)	96, 3053
BspDI	ATCGAT	1 cut(s)	3214
BspHI	TCATGA	4 cut(s)	529, 1081, 2190, 2776
BspLI	GGNNCC	5 cut(s)	28, 360, 914, 1772, 3326
BspMAI	CTGCAG	1 cut(s)	3400
BspPI	GGATC	6 cut(s)	295, 353, 366, 907, 920, 2009
BspQI	GCTCTTC	1 cut(s)	1103
BsrDI	GCAATG	4 cut(s)	1350, 1729, 2085, 2979
BsrFI	RCCGGY	1 cut(s)	1129
BsrGI	TGTACA	6 cut(s)	129, 569, 720, 1585, 1994, 3364
BsrI	ACTGG	7 cut(s)	388, 596, 688, 949, 1404, 1741, 3035
BssAI	RCCGGY	1 cut(s)	1129
BssECI	CCNNGG	2 cut(s)	1823, 2087
BssMI	GATC	9 cut(s)	121, 300, 358, 779, 912, 1075, 2014, 2257, 3211
BssSI	CACGAG	1 cut(s)	3245
BssT1I	CCWWGG	2 cut(s)	1823, 2087
Bst2BI	CACGAG	1 cut(s)	3245
Bst2UI	CCWGG	1 cut(s)	1551
Bst6I	CTCTTC	6 cut(s)	37, 43, 49, 178, 1103, 1572
BstAPI	GCANNNNNTGC	2 cut(s)	898, 1498
BstAUI	TGTACA	6 cut(s)	129, 569, 720, 1585, 1994, 3364
BstC8I	GCNNGC	4 cut(s)	1131, 1245, 1556, 2098
BstDEI	CTNAG	7 cut(s)	83, 179, 467, 499, 1969, 2266, 3040
BstEII	GGTNACC	1 cut(s)	856
BstENI	CCTNNNNNAGG	1 cut(s)	792
BstF5I	GGATG	7 cut(s)	1494, 1588, 1727, 2069, 2459, 2997, 3189
BstH2I	RGCGCY	2 cut(s)	209, 2423
BstHHI	GCGC	4 cut(s)	208, 903, 2422, 3259
BstKTI	GATC	9 cut(s)	124, 303, 361, 782, 915, 1078, 2017, 2260, 3214
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	9 cut(s)	121, 300, 358, 779, 912, 1075, 2014, 2257, 3211
BstMWI	GCNNNNNNNGC	6 cut(s)	898, 1451, 1498, 1555, 1560, 2428
BstNI	CCWGG	1 cut(s)	1551
BstNSI	RCATGY	4 cut(s)	1359, 1849, 1864, 2556
BstPAI	GACNNNNGTC	1 cut(s)	2052
BstPI	GGTNACC	1 cut(s)	856
BstSCI	CCNGG	1 cut(s)	1549
BstSFI	CTRYAG	3 cut(s)	1161, 3286, 3396
BstV1I	GCAGC	7 cut(s)	488, 740, 1259, 1910, 2313, 3241, 3410
BstV2I	GAAGAC	6 cut(s)	70, 812, 1175, 2537, 3357, 3425
BstX2I	RGATCY	4 cut(s)	300, 358, 912, 2257
BstYI	RGATCY	4 cut(s)	300, 358, 912, 2257
Bsu15I	ATCGAT	1 cut(s)	3214
BsuI	GTATCC	1 cut(s)	3127
BsuRI	GGCC	5 cut(s)	340, 798, 1454, 1783, 2250
BsuTUI	ATCGAT	1 cut(s)	3214
BtrI	CACGTC	1 cut(s)	107
BtsCI	GGATG	7 cut(s)	1494, 1588, 1727, 2069, 2459, 2997, 3189
BtsIMutI	CAGTG	2 cut(s)	651, 3127
Cac8I	GCNNGC	4 cut(s)	1131, 1245, 1556, 2098
CciI	TCATGA	4 cut(s)	529, 1081, 2190, 2776
CfoI	GCGC	4 cut(s)	208, 903, 2422, 3259
Cfr10I	RCCGGY	1 cut(s)	1129
Cfr13I	GGNCC	3 cut(s)	495, 1453, 3325
ClaI	ATCGAT	1 cut(s)	3214
DdeI	CTNAG	7 cut(s)	83, 179, 467, 499, 1969, 2266, 3040
DpnI	GATC	9 cut(s)	123, 302, 360, 781, 914, 1077, 2016, 2259, 3213
DpnII	GATC	9 cut(s)	121, 300, 358, 779, 912, 1075, 2014, 2257, 3211
DriI	GACNNNNNGTC	1 cut(s)	2727
EaeI	YGGCCR	2 cut(s)	338, 1781
Eam1104I	CTCTTC	6 cut(s)	37, 43, 49, 178, 1103, 1572
Eam1105I	GACNNNNNGTC	1 cut(s)	2727
EarI	CTCTTC	6 cut(s)	37, 43, 49, 178, 1103, 1572
Ecl136II	GAGCTC	2 cut(s)	634, 1096
Eco130I	CCWWGG	2 cut(s)	1823, 2087
Eco147I	AGGCCT	1 cut(s)	798
Eco24I	GRGCYC	2 cut(s)	636, 1098
Eco32I	GATATC	1 cut(s)	2926
Eco47I	GGWCC	2 cut(s)	495, 3325
Eco53kI	GAGCTC	2 cut(s)	634, 1096
Eco57I	CTGAAG	1 cut(s)	1084
Eco88I	CYCGRG	1 cut(s)	988
Eco91I	GGTNACC	1 cut(s)	856
EcoICRI	GAGCTC	2 cut(s)	634, 1096
EcoNI	CCTNNNNNAGG	1 cut(s)	792
EcoO109I	RGGNCCY	1 cut(s)	1453
EcoO65I	GGTNACC	1 cut(s)	856
EcoRI	GAATTC	3 cut(s)	2177, 2474, 2930
EcoRII	CCWGG	1 cut(s)	1549
EcoRV	GATATC	1 cut(s)	2926
EcoT14I	CCWWGG	2 cut(s)	1823, 2087
EcoT22I	ATGCAT	4 cut(s)	268, 1494, 1729, 2997
EcoT38I	GRGCYC	2 cut(s)	636, 1098
ErhI	CCWWGG	2 cut(s)	1823, 2087
FaqI	GGGAC	2 cut(s)	662, 1971
FauI	CCCGC	1 cut(s)	1948
FauNDI	CATATG	1 cut(s)	1657
Fnu4HI	GCNGC	7 cut(s)	477, 754, 1248, 1924, 2302, 3255, 3399
FokI	GGATG	7 cut(s)	1501, 1595, 1714, 2076, 2466, 3004, 3176
FriOI	GRGCYC	2 cut(s)	636, 1098
Fsp4HI	GCNGC	7 cut(s)	477, 754, 1248, 1924, 2302, 3255, 3399
FspBI	CTAG	8 cut(s)	800, 1151, 1319, 1346, 2088, 2655, 2672, 3332
GlaI	GCGC	4 cut(s)	207, 902, 2421, 3258
GluI	GCNGC	7 cut(s)	477, 754, 1248, 1924, 2302, 3255, 3399
GsuI	CTGGAG	1 cut(s)	2367
HaeII	RGCGCY	2 cut(s)	209, 2423
HaeIII	GGCC	5 cut(s)	340, 798, 1454, 1783, 2250
HapII	CCGG	5 cut(s)	1119, 1130, 2202, 2417, 2813
HhaI	GCGC	4 cut(s)	208, 903, 2422, 3259
Hin6I	GCGC	4 cut(s)	206, 901, 2420, 3257
HinP1I	GCGC	4 cut(s)	206, 901, 2420, 3257
HincII	GTYRAC	5 cut(s)	1948, 2047, 2362, 2572, 3283
HindII	GTYRAC	5 cut(s)	1948, 2047, 2362, 2572, 3283
HindIII	AAGCTT	5 cut(s)	1086, 1681, 2039, 2140, 3316
HpaI	GTTAAC	1 cut(s)	2362
HpaII	CCGG	5 cut(s)	1119, 1130, 2202, 2417, 2813
HphI	GGTGA	4 cut(s)	107, 868, 1342, 1530
Hpy188I	TCNGA	8 cut(s)	67, 147, 367, 1874, 2216, 2344, 2864, 3169
HpyCH4IV	ACGT	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	6 cut(s)	898, 1451, 1498, 1555, 1560, 2428
HpyF3I	CTNAG	7 cut(s)	83, 179, 467, 499, 1969, 2266, 3040
HpySE526I	ACGT	1 cut(s)	106
HspAI	GCGC	4 cut(s)	206, 901, 2420, 3257
KroI	GCCGGC	1 cut(s)	1129
KroNI	GCCGGC	1 cut(s)	1131
KspAI	GTTAAC	1 cut(s)	2362
Kzo9I	GATC	9 cut(s)	121, 300, 358, 779, 912, 1075, 2014, 2257, 3211
LguI	GCTCTTC	1 cut(s)	1103
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	7 cut(s)	488, 740, 1259, 1910, 2313, 3241, 3410
LweI	GCATC	5 cut(s)	275, 1479, 1736, 2054, 2982
MaeI	CTAG	8 cut(s)	800, 1151, 1319, 1346, 2088, 2655, 2672, 3332
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	9 cut(s)	856, 1259, 1409, 1863, 2377, 2715, 3122, 3225, 3334
MalI	GATC	9 cut(s)	123, 302, 360, 781, 914, 1077, 2016, 2259, 3213
MboI	GATC	9 cut(s)	121, 300, 358, 779, 912, 1075, 2014, 2257, 3211
MfeI	CAATTG	1 cut(s)	2232
MflI	RGATCY	4 cut(s)	300, 358, 912, 2257
MhlI	GDGCHC	2 cut(s)	636, 1098
MlsI	TGGCCA	2 cut(s)	340, 1783
MluNI	TGGCCA	2 cut(s)	340, 1783
MlyI	GAGTC	5 cut(s)	2062, 2374, 2723, 2828, 3173
MmeI	TCCRAC	6 cut(s)	580, 946, 1085, 2005, 2769, 2996
Mox20I	TGGCCA	2 cut(s)	340, 1783
Mph1103I	ATGCAT	4 cut(s)	268, 1494, 1729, 2997
MroNI	GCCGGC	1 cut(s)	1129
MroXI	GAANNNNTTC	2 cut(s)	1112, 2409
MscI	TGGCCA	2 cut(s)	340, 1783
MslI	CAYNNNNRTG	3 cut(s)	1216, 1218, 3232
Msp20I	TGGCCA	2 cut(s)	340, 1783
MspA1I	CMGCKG	1 cut(s)	2100
MspI	CCGG	5 cut(s)	1119, 1130, 2202, 2417, 2813
MspR9I	CCNGG	1 cut(s)	1551
MunI	CAATTG	1 cut(s)	2232
Mva1269I	GAATGC	3 cut(s)	422, 1114, 2351
MvaI	CCWGG	1 cut(s)	1551
MwoI	GCNNNNNNNGC	6 cut(s)	898, 1451, 1498, 1555, 1560, 2428
NaeI	GCCGGC	1 cut(s)	1131
NdeI	CATATG	1 cut(s)	1657
NdeII	GATC	9 cut(s)	121, 300, 358, 779, 912, 1075, 2014, 2257, 3211
NgoMIV	GCCGGC	1 cut(s)	1129
NlaIV	GGNNCC	5 cut(s)	28, 360, 914, 1772, 3326
NmuCI	GTSAC	7 cut(s)	856, 1409, 1863, 2377, 2715, 3122, 3225
NsiI	ATGCAT	4 cut(s)	268, 1494, 1729, 2997
NspI	RCATGY	4 cut(s)	1359, 1849, 1864, 2556
PagI	TCATGA	4 cut(s)	529, 1081, 2190, 2776
PceI	AGGCCT	1 cut(s)	798
PciI	ACATGT	1 cut(s)	1860
PciSI	GCTCTTC	1 cut(s)	1103
PctI	GAATGC	3 cut(s)	422, 1114, 2351
PdiI	GCCGGC	1 cut(s)	1131
PdmI	GAANNNNTTC	2 cut(s)	1112, 2409
PkrI	GCNGC	7 cut(s)	478, 755, 1249, 1925, 2303, 3256, 3400
PleI	GAGTC	5 cut(s)	2061, 2374, 2722, 2827, 3172
PpsI	GAGTC	5 cut(s)	2061, 2374, 2722, 2827, 3172
PscI	ACATGT	1 cut(s)	1860
PshAI	GACNNNNGTC	1 cut(s)	2052
PsiI	TTATAA	2 cut(s)	1835, 2037
Psp124BI	GAGCTC	2 cut(s)	636, 1098
Psp6I	CCWGG	1 cut(s)	1549
PspEI	GGTNACC	1 cut(s)	856
PspGI	CCWGG	1 cut(s)	1549
PspN4I	GGNNCC	5 cut(s)	28, 360, 914, 1772, 3326
PspPI	GGNCC	3 cut(s)	495, 1453, 3325
PsrI	GAACNNNNNNTAC	4 cut(s)	1578, 1610, 3283, 3315
PstI	CTGCAG	1 cut(s)	3400
PsuI	RGATCY	4 cut(s)	300, 358, 912, 2257
PvuII	CAGCTG	1 cut(s)	2100
RseI	CAYNNNNRTG	3 cut(s)	1216, 1218, 3232
SacI	GAGCTC	2 cut(s)	636, 1098
SapI	GCTCTTC	1 cut(s)	1103
SatI	GCNGC	7 cut(s)	477, 754, 1248, 1924, 2302, 3255, 3399
Sau3AI	GATC	9 cut(s)	121, 300, 358, 779, 912, 1075, 2014, 2257, 3211
Sau96I	GGNCC	3 cut(s)	495, 1453, 3325
ScaI	AGTACT	3 cut(s)	1159, 1440, 1991
SchI	GAGTC	5 cut(s)	2062, 2374, 2723, 2828, 3173
ScrFI	CCNGG	1 cut(s)	1551
SduI	GDGCHC	2 cut(s)	636, 1098
SfaNI	GCATC	5 cut(s)	275, 1479, 1736, 2054, 2982
SfcI	CTRYAG	3 cut(s)	1161, 3286, 3396
SinI	GGWCC	2 cut(s)	495, 3325
SmiMI	CAYNNNNRTG	3 cut(s)	1216, 1218, 3232
SmlI	CTYRAG	4 cut(s)	21, 2050, 2324, 2590
SmoI	CTYRAG	4 cut(s)	21, 2050, 2324, 2590
SseBI	AGGCCT	1 cut(s)	798
SsiI	CCGC	1 cut(s)	1955
SspI	AATATT	2 cut(s)	1465, 2945
SspMI	CTAG	8 cut(s)	800, 1151, 1319, 1346, 2088, 2655, 2672, 3332
SstI	GAGCTC	2 cut(s)	636, 1098
StuI	AGGCCT	1 cut(s)	798
StyD4I	CCNGG	1 cut(s)	1549
StyI	CCWWGG	2 cut(s)	1823, 2087
TaiI	ACGT	1 cut(s)	109
TscAI	CASTG	2 cut(s)	658, 3127
TseFI	GTSAC	7 cut(s)	856, 1409, 1863, 2377, 2715, 3122, 3225
TseI	GCWGC	7 cut(s)	476, 753, 1247, 1923, 2301, 3254, 3398
Tsp45I	GTSAC	7 cut(s)	856, 1409, 1863, 2377, 2715, 3122, 3225
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	2 cut(s)	658, 3127
VpaK11BI	GGWCC	2 cut(s)	495, 3325
XagI	CCTNNNNNAGG	1 cut(s)	792
XceI	RCATGY	4 cut(s)	1359, 1849, 1864, 2556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2391
XmaJI	CCTAGG	1 cut(s)	2087
XmnI	GAANNNNTTC	2 cut(s)	1112, 2409
XspI	CTAG	8 cut(s)	800, 1151, 1319, 1346, 2088, 2655, 2672, 3332
ZrmI	AGTACT	3 cut(s)	1159, 1440, 1991
Zsp2I	ATGCAT	4 cut(s)	268, 1494, 1729, 2997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.