Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010960

Physical Location & Seq

Genomic Coordinates Reverse (-)

17839073 .. 17842286

Gene Structure 3214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAAGCATCACATTTCTTACAAAGCAGCAGCTTTGTTACAACTCTGCCTCACCGGAGGCATATGCATGCTCAAAAGCTGAGGCGCTCTCAGATCGTTGCAGTGCTTTCAACGCCGGCGGATATTATAAACATTGAGGCAGATAAAAGCAGTATAAGACCAGCACATGGTGCAGCAGAAAAGAAAAGTGTCTATAATGATAACTGGTTCGATAAACTGGCCATTGATCATCTGTCTCAAAATGTCCAAGCTGCATCAGGGTTGAGAAACAGAAAGACTGGATTCAAAAGCTTGGTAGAGGCAGCTAGCGCTGCGTCACGAAACTTTAATCCAGAAAAACAAAGAGAAATAGTCGTTCAAGCTCTTCAGAGTGCATTTCCAAGGCCAATACTATCCCTGATTAAGGCATTACTACCAGAATCTAAATTCGCAAGGGAATACTTCGCCATCTTCACCACCGTCTTCTTCGCCTGGCTGGTTGGACCATGTGAGGTGAGGGAATCAGAGTTCAATGGAAGCAAAGAGAAAAATGTAGTCCACATACCAAAATGCAGGTTCTTGGAGGAAACCAATTGTGTAGGGATGTGCATTAACATGTGTAAGATGCCATCTCAAAGCTTTATAAAGGATACACTCGGAATGCCAGTCAACATGGTTCCAAATTTTGATGATATGAGCTGTCAGATGATATTTGGGGAGGAGCCTCCGGAGCTACTCAATGATCCAGCACTCAAGCAACCATGCTTCAAACTATGCAAAGTAAAGCAAAGGCACAATAACTGCTCCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009653 GO:0009987 GO:0010016 GO:0010223 GO:0010346 GO:0010817 GO:0016106 GO:0016114 GO:0016853 GO:0016859 GO:0018130 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

DUF4033

Protein Analysis

263

Amino Acids

29.65

Weight (kDa)

8.96

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
D27-like_C	PF13225	158 - 238	1.1e-34	Beta-carotene isomerase D27-like, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03055 AT1G03055
fragaria_vesca	FvH4_2g22790
malus_domestica	MD03G1256200.v1.1 MD11G1277000.v1.1
prunus_persica	Prupe.8G233300_v2.0.a1
pyrus_communis	pycom11g24500
rosa_chinensis	RchiOBHm_Chr6g0289711
rosa_laevigata	RLG00000012273
rosa_multiflora	Rmu_sc0005640.1_g000030
rosa_roxburghii	Rroxscaffold_7G00177620 Rroxscaffold_7G00178120
rosa_rugosa	Rorug06G0205900 Rorug06G0206000 Rorug06G0206000
rosa_samantha	Rh6AG317600 Rh6BG325200 Rh6CG330800 Rh6DG316500
rosa_wichuraiana	Rw6G027390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	128, 623
Acc36I	ACCTGC	1 cut(s)	543
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccIII	TCCGGA	1 cut(s)	706
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	716
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	2 cut(s)	425, 661
AcuI	CTGAAG	1 cut(s)	350
AdeI	CACNNNGTG	1 cut(s)	170
AfeI	AGCGCT	1 cut(s)	310
AfiI	CCNNNNNNNGG	2 cut(s)	167, 403
AflIII	ACRYGT	1 cut(s)	594
AgsI	TTSAA	5 cut(s)	111, 286, 359, 511, 748
AjnI	CCWGG	1 cut(s)	470
AloI	GAACNNNNNNTCC	2 cut(s)	491, 523
AluBI	AGCT	9 cut(s)	33, 79, 251, 291, 305, 362, 618, 678, 712
AluI	AGCT	9 cut(s)	33, 79, 251, 291, 305, 362, 618, 678, 712
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	716
Aor13HI	TCCGGA	1 cut(s)	706
Aor51HI	AGCGCT	1 cut(s)	310
AoxI	GGCC	2 cut(s)	219, 383
ApeKI	GCWGC	6 cut(s)	27, 30, 173, 251, 302, 311
ApoI	RAATTY	2 cut(s)	425, 661
AspLEI	GCGC	2 cut(s)	87, 311
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	3 cut(s)	44, 445, 505
AsuNHI	GCTAGC	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	454
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	6 cut(s)	39, 42, 185, 238, 298, 314
BccI	CCATC	2 cut(s)	455, 616
BciT130I	CCWGG	1 cut(s)	472
BciVI	GTATCC	1 cut(s)	622
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	306
BfoI	RGCGCY	2 cut(s)	88, 312
BfuAI	ACCTGC	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	6 cut(s)	28, 31, 174, 252, 303, 312
BlsI	GCNGC	6 cut(s)	29, 32, 175, 253, 304, 313
Bme1390I	CCNGG	1 cut(s)	472
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	657, 702
BmrFI	CCNGG	1 cut(s)	472
BmsI	GCATC	3 cut(s)	17, 263, 594
BmtI	GCTAGC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	454
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	1 cut(s)	769
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	716
BsaJI	CCNNGG	1 cut(s)	380
BsaWI	WCCGGW	2 cut(s)	54, 706
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 403
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	5 cut(s)	209, 222, 283, 644, 786
BseAI	TCCGGA	1 cut(s)	706
BseBI	CCWGG	1 cut(s)	472
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	588
BseLI	CCNNNNNNNGG	2 cut(s)	167, 403
BseMII	CTCAG	2 cut(s)	71, 104
BseNI	ACTGG	5 cut(s)	209, 222, 283, 644, 786
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	6 cut(s)	39, 42, 185, 238, 298, 314
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	221, 385
BsiSI	CCGG	3 cut(s)	55, 116, 707
BslI	CCNNNNNNNGG	2 cut(s)	167, 403
BsmAI	GTCTC	1 cut(s)	240
BsmI	GAATGC	1 cut(s)	645
BsnI	GGCC	2 cut(s)	221, 385
Bsp13I	TCCGGA	1 cut(s)	706
Bsp143I	GATC	3 cut(s)	93, 226, 721
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	2 cut(s)	221, 385
BspCNI	CTCAG	2 cut(s)	72, 103
BspEI	TCCGGA	1 cut(s)	706
BspLI	GGNNCC	2 cut(s)	657, 702
BspMI	ACCTGC	1 cut(s)	543
BspOI	GCTAGC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	716
BspQI	GCTCTTC	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	5 cut(s)	209, 222, 283, 644, 786
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	3 cut(s)	93, 226, 721
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	69, 117, 307
BstDEI	CTNAG	2 cut(s)	80, 90
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	588
BstH2I	RGCGCY	2 cut(s)	88, 312
BstHHI	GCGC	2 cut(s)	87, 311
BstKTI	GATC	3 cut(s)	96, 229, 724
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	3 cut(s)	93, 226, 721
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 170, 308, 311, 709
BstNI	CCWGG	1 cut(s)	472
BstNSI	RCATGY	2 cut(s)	71, 598
BstSCI	CCNGG	1 cut(s)	470
BstV1I	GCAGC	6 cut(s)	39, 42, 185, 238, 298, 314
BstV2I	GAAGAC	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	221, 385
BtsCI	GGATG	1 cut(s)	588
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	543
Cac8I	GCNNGC	3 cut(s)	69, 117, 307
CfoI	GCGC	2 cut(s)	87, 311
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	482
CseI	GACGC	1 cut(s)	303
CviAII	CATG	6 cut(s)	68, 167, 486, 595, 652, 741
DdeI	CTNAG	2 cut(s)	80, 90
DpnI	GATC	3 cut(s)	95, 228, 723
DpnII	GATC	3 cut(s)	93, 226, 721
DraIII	CACNNNGTG	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	482
Eco47III	AGCGCT	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	380
EcoT22I	ATGCAT	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	6 cut(s)	71, 170, 489, 598, 655, 744
FatI	CATG	6 cut(s)	67, 166, 485, 594, 651, 740
FauNDI	CATATG	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	6 cut(s)	28, 31, 174, 252, 303, 312
FokI	GGATG	1 cut(s)	595
Fsp4HI	GCNGC	6 cut(s)	28, 31, 174, 252, 303, 312
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	2 cut(s)	86, 310
GluI	GCNGC	6 cut(s)	28, 31, 174, 252, 303, 312
GsuI	CTGGAG	1 cut(s)	769
HaeII	RGCGCY	2 cut(s)	88, 312
HaeIII	GGCC	2 cut(s)	221, 385
HapII	CCGG	3 cut(s)	55, 116, 707
HgaI	GACGC	1 cut(s)	303
HhaI	GCGC	2 cut(s)	87, 311
Hin1II	CATG	6 cut(s)	71, 170, 489, 598, 655, 744
Hin6I	GCGC	2 cut(s)	85, 309
HinP1I	GCGC	2 cut(s)	85, 309
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	2 cut(s)	289, 616
HinfI	GANTC	3 cut(s)	282, 419, 500
HpaII	CCGG	3 cut(s)	55, 116, 707
HphI	GGTGA	3 cut(s)	44, 445, 505
Hpy166II	GTNNAC	2 cut(s)	538, 649
Hpy188I	TCNGA	5 cut(s)	93, 369, 505, 638, 684
Hpy188III	TCNNGA	3 cut(s)	318, 332, 707
Hpy8I	GTNNAC	2 cut(s)	538, 649
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	8 cut(s)	67, 101, 173, 254, 374, 552, 588, 756
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 170, 308, 311, 709
HpyF3I	CTNAG	2 cut(s)	80, 90
Hsp92II	CATG	6 cut(s)	71, 170, 489, 598, 655, 744
HspAI	GCGC	2 cut(s)	85, 309
Kpn2I	TCCGGA	1 cut(s)	706
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	93, 226, 721
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	3 cut(s)	700, 709, 788
Lsp1109I	GCAGC	6 cut(s)	39, 42, 185, 238, 298, 314
LweI	GCATC	3 cut(s)	17, 263, 594
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	37, 315
MalI	GATC	3 cut(s)	95, 228, 723
MboI	GATC	3 cut(s)	93, 226, 721
MboII	GAAGA	4 cut(s)	356, 442, 454, 457
MfeI	CAATTG	1 cut(s)	571
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	3 cut(s)	425, 571, 661
MluNI	TGGCCA	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	460
Mox20I	TGGCCA	1 cut(s)	221
Mph1103I	ATGCAT	1 cut(s)	69
MreI	CGCCGGCG	1 cut(s)	115
MroI	TCCGGA	1 cut(s)	706
MroNI	GCCGGC	1 cut(s)	115
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	3 cut(s)	327, 402, 591
MslI	CAYNNNNRTG	2 cut(s)	66, 593
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	3 cut(s)	55, 116, 707
MspR9I	CCNGG	1 cut(s)	472
MunI	CAATTG	1 cut(s)	571
Mva1269I	GAATGC	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	5 cut(s)	112, 170, 308, 311, 709
NaeI	GCCGGC	1 cut(s)	117
NdeI	CATATG	1 cut(s)	63
NdeII	GATC	3 cut(s)	93, 226, 721
NgoMIV	GCCGGC	1 cut(s)	115
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	6 cut(s)	71, 170, 489, 598, 655, 744
NlaIV	GGNNCC	2 cut(s)	657, 702
NmuCI	GTSAC	1 cut(s)	315
NsiI	ATGCAT	1 cut(s)	69
NspI	RCATGY	2 cut(s)	71, 598
PaeI	GCATGC	1 cut(s)	71
PciI	ACATGT	1 cut(s)	594
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	1 cut(s)	645
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	282, 419, 500
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	6 cut(s)	29, 32, 175, 253, 304, 313
PscI	ACATGT	1 cut(s)	594
PsiI	TTATAA	2 cut(s)	128, 623
Psp6I	CCWGG	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	2 cut(s)	657, 702
PspPI	GGNCC	1 cut(s)	482
RseI	CAYNNNNRTG	2 cut(s)	66, 593
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	3 cut(s)	327, 402, 591
SatI	GCNGC	6 cut(s)	28, 31, 174, 252, 303, 312
Sau3AI	GATC	3 cut(s)	93, 226, 721
Sau96I	GGNCC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	472
SfaNI	GCATC	3 cut(s)	17, 263, 594
SgrAI	CRCCGGYG	1 cut(s)	115
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	2 cut(s)	66, 593
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	3 cut(s)	425, 571, 661
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	470
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	460
TaqI	TCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	425, 571, 661
TfiI	GAWTC	3 cut(s)	282, 419, 500
Tru1I	TTAA	3 cut(s)	327, 402, 591
Tru9I	TTAA	3 cut(s)	327, 402, 591
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	315
TseI	GCWGC	6 cut(s)	27, 30, 173, 251, 302, 311
Tsp45I	GTSAC	1 cut(s)	315
TspRI	CASTG	1 cut(s)	108
Van91I	CCANNNNNTGG	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	482
XagI	CCTNNNNNAGG	1 cut(s)	401
XapI	RAATTY	2 cut(s)	425, 661
XceI	RCATGY	2 cut(s)	71, 598
XspI	CTAG	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.