Beta-carotene isomerase D27
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G03055 AT1G03055 |
| fragaria_vesca | FvH4_2g22790 |
| malus_domestica | MD03G1256200.v1.1 MD11G1277000.v1.1 |
| prunus_persica | Prupe.8G233300_v2.0.a1 |
| pyrus_communis | pycom11g24500 |
| rosa_chinensis | RchiOBHm_Chr6g0289711 |
| rosa_laevigata | RLG00000012273 |
| rosa_multiflora | Rmu_sc0005640.1_g000030 |
| rosa_roxburghii | Rroxscaffold_7G00177620 Rroxscaffold_7G00178120 |
| rosa_rugosa | Rorug06G0205900 Rorug06G0206000 Rorug06G0206000 |
| rosa_samantha | Rh6AG317600 Rh6BG325200 Rh6CG330800 Rh6DG316500 |
| rosa_wichuraiana | Rw6G027390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 564 |
| AccII | CGCG | 1 cut(s) | 118 |
| AciI | CCGC | 2 cut(s) | 118, 125 |
| AclWI | GGATC | 1 cut(s) | 737 |
| AcoI | YGGCCR | 2 cut(s) | 119, 240 |
| AcsI | RAATTY | 3 cut(s) | 344, 446, 682 |
| AgsI | TTSAA | 4 cut(s) | 269, 286, 380, 769 |
| AhlI | ACTAGT | 1 cut(s) | 370 |
| AjnI | CCWGG | 1 cut(s) | 491 |
| Alw21I | GWGCWC | 1 cut(s) | 531 |
| Alw26I | GTCTC | 1 cut(s) | 261 |
| AlwI | GGATC | 1 cut(s) | 737 |
| AoxI | GGCC | 3 cut(s) | 119, 240, 503 |
| ApaI | GGGCCC | 1 cut(s) | 507 |
| ApeKI | GCWGC | 5 cut(s) | 41, 104, 272, 323, 332 |
| ApoI | RAATTY | 3 cut(s) | 344, 446, 682 |
| AseI | ATTAAT | 2 cut(s) | 246, 612 |
| AspS9I | GGNCC | 4 cut(s) | 503, 504, 676, 721 |
| AsuHPI | GGTGA | 1 cut(s) | 466 |
| AsuII | TTCGAA | 1 cut(s) | 306 |
| AvaII | GGWCC | 2 cut(s) | 676, 721 |
| BaeGI | GKGCMC | 1 cut(s) | 507 |
| BalI | TGGCCA | 1 cut(s) | 242 |
| BanII | GRGCYC | 2 cut(s) | 507, 531 |
| Bbv12I | GWGCWC | 1 cut(s) | 531 |
| BbvI | GCAGC | 5 cut(s) | 28, 91, 259, 319, 335 |
| BccI | CCATC | 4 cut(s) | 232, 488, 527, 637 |
| BciT130I | CCWGG | 1 cut(s) | 493 |
| BcoDI | GTCTC | 1 cut(s) | 261 |
| BcuI | ACTAGT | 1 cut(s) | 370 |
| BfaI | CTAG | 2 cut(s) | 371, 386 |
| BfmI | CTRYAG | 2 cut(s) | 105, 327 |
| BfuAI | ACCTGC | 1 cut(s) | 564 |
| BisI | GCNGC | 6 cut(s) | 42, 105, 119, 273, 324, 333 |
| BlsI | GCNGC | 6 cut(s) | 43, 106, 120, 274, 325, 334 |
| Bme1390I | CCNGG | 1 cut(s) | 493 |
| Bme18I | GGWCC | 2 cut(s) | 676, 721 |
| BmgT120I | GGNCC | 4 cut(s) | 503, 504, 676, 721 |
| BmiI | GGNNCC | 3 cut(s) | 505, 678, 723 |
| BmrFI | CCNGG | 1 cut(s) | 493 |
| BmsI | GCATC | 3 cut(s) | 17, 344, 615 |
| BpmI | CTGGAG | 2 cut(s) | 648, 711 |
| Bpu14I | TTCGAA | 1 cut(s) | 306 |
| BpuEI | CTTGAG | 2 cut(s) | 43, 737 |
| BsaJI | CCNNGG | 1 cut(s) | 655 |
| Bse118I | RCCGGY | 1 cut(s) | 121 |
| Bse1I | ACTGG | 3 cut(s) | 193, 230, 665 |
| BseBI | CCWGG | 1 cut(s) | 493 |
| BseDI | CCNNGG | 1 cut(s) | 655 |
| BseGI | GGATG | 2 cut(s) | 243, 609 |
| BseMII | CTCAG | 1 cut(s) | 272 |
| BseNI | ACTGG | 3 cut(s) | 193, 230, 665 |
| BseSI | GKGCMC | 1 cut(s) | 507 |
| BseX3I | CGGCCG | 1 cut(s) | 119 |
| BseXI | GCAGC | 5 cut(s) | 28, 91, 259, 319, 335 |
| BsgI | GTGCAG | 1 cut(s) | 213 |
| Bsh1236I | CGCG | 1 cut(s) | 118 |
| Bsh1285I | CGRYCG | 1 cut(s) | 122 |
| BshFI | GGCC | 3 cut(s) | 121, 242, 505 |
| BsiEI | CGRYCG | 1 cut(s) | 122 |
| BsiHKAI | GWGCWC | 1 cut(s) | 531 |
| BsiSI | CCGG | 1 cut(s) | 122 |
| BslFI | GGGAC | 1 cut(s) | 662 |
| BsmAI | GTCTC | 1 cut(s) | 261 |
| BsmFI | GGGAC | 1 cut(s) | 662 |
| BsnI | GGCC | 3 cut(s) | 121, 242, 505 |
| Bsp119I | TTCGAA | 1 cut(s) | 306 |
| Bsp120I | GGGCCC | 1 cut(s) | 503 |
| Bsp1286I | GDGCHC | 2 cut(s) | 507, 531 |
| Bsp143I | GATC | 2 cut(s) | 232, 742 |
| BspACI | CCGC | 2 cut(s) | 118, 125 |
| BspANI | GGCC | 3 cut(s) | 121, 242, 505 |
| BspCNI | CTCAG | 1 cut(s) | 271 |
| BspFNI | CGCG | 1 cut(s) | 118 |
| BspLI | GGNNCC | 3 cut(s) | 505, 678, 723 |
| BspMAI | CTGCAG | 1 cut(s) | 109 |
| BspMI | ACCTGC | 1 cut(s) | 564 |
| BspPI | GGATC | 1 cut(s) | 737 |
| BspT104I | TTCGAA | 1 cut(s) | 306 |
| BsrFI | RCCGGY | 1 cut(s) | 121 |
| BsrI | ACTGG | 3 cut(s) | 193, 230, 665 |
| BssAI | RCCGGY | 1 cut(s) | 121 |
| BssECI | CCNNGG | 1 cut(s) | 655 |
| BssMI | GATC | 2 cut(s) | 232, 742 |
| BssT1I | CCWWGG | 1 cut(s) | 655 |
| Bst2UI | CCWGG | 1 cut(s) | 493 |
| Bst4CI | ACNGT | 2 cut(s) | 95, 762 |
| BstBI | TTCGAA | 1 cut(s) | 306 |
| BstC8I | GCNNGC | 2 cut(s) | 66, 123 |
| BstDEI | CTNAG | 3 cut(s) | 86, 258, 422 |
| BstF5I | GGATG | 2 cut(s) | 243, 609 |
| BstFNI | CGCG | 1 cut(s) | 118 |
| BstKTI | GATC | 2 cut(s) | 235, 745 |
| BstMAI | GTCTC | 1 cut(s) | 261 |
| BstMBI | GATC | 2 cut(s) | 232, 742 |
| BstMCI | CGRYCG | 1 cut(s) | 122 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 33, 50, 118, 309, 323, 329, 332 |
| BstNI | CCWGG | 1 cut(s) | 493 |
| BstNSI | RCATGY | 1 cut(s) | 68 |
| BstSCI | CCNGG | 1 cut(s) | 491 |
| BstSFI | CTRYAG | 2 cut(s) | 105, 327 |
| BstSLI | GKGCMC | 1 cut(s) | 507 |
| BstUI | CGCG | 1 cut(s) | 118 |
| BstV1I | GCAGC | 5 cut(s) | 28, 91, 259, 319, 335 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 598 |
| BstZI | CGGCCG | 1 cut(s) | 119 |
| BsuRI | GGCC | 3 cut(s) | 121, 242, 505 |
| BtsCI | GGATG | 2 cut(s) | 243, 609 |
| BtsI | GCAGTG | 1 cut(s) | 114 |
| BtsIMutI | CAGTG | 2 cut(s) | 91, 114 |
| BveI | ACCTGC | 1 cut(s) | 564 |
| Cac8I | GCNNGC | 2 cut(s) | 66, 123 |
| Cfr10I | RCCGGY | 1 cut(s) | 121 |
| Cfr13I | GGNCC | 4 cut(s) | 503, 504, 676, 721 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 280, 315 |
| CviAII | CATG | 3 cut(s) | 65, 71, 673 |
| DdeI | CTNAG | 3 cut(s) | 86, 258, 422 |
| DpnI | GATC | 2 cut(s) | 234, 744 |
| DpnII | GATC | 2 cut(s) | 232, 742 |
| EaeI | YGGCCR | 2 cut(s) | 119, 240 |
| EagI | CGGCCG | 1 cut(s) | 119 |
| EciI | GGCGGA | 1 cut(s) | 140 |
| Ecl136II | GAGCTC | 1 cut(s) | 529 |
| EclXI | CGGCCG | 1 cut(s) | 119 |
| Eco130I | CCWWGG | 1 cut(s) | 655 |
| Eco24I | GRGCYC | 2 cut(s) | 507, 531 |
| Eco47I | GGWCC | 2 cut(s) | 676, 721 |
| Eco52I | CGGCCG | 1 cut(s) | 119 |
| Eco53kI | GAGCTC | 1 cut(s) | 529 |
| EcoICRI | GAGCTC | 1 cut(s) | 529 |
| EcoO109I | RGGNCCY | 3 cut(s) | 503, 504, 721 |
| EcoRII | CCWGG | 1 cut(s) | 491 |
| EcoT14I | CCWWGG | 1 cut(s) | 655 |
| EcoT38I | GRGCYC | 2 cut(s) | 507, 531 |
| ErhI | CCWWGG | 1 cut(s) | 655 |
| FaeI | CATG | 3 cut(s) | 68, 74, 676 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 287, 319 |
| FaqI | GGGAC | 1 cut(s) | 662 |
| FatI | CATG | 3 cut(s) | 64, 70, 672 |
| Fnu4HI | GCNGC | 6 cut(s) | 42, 105, 119, 273, 324, 333 |
| FokI | GGATG | 2 cut(s) | 250, 616 |
| FriOI | GRGCYC | 2 cut(s) | 507, 531 |
| Fsp4HI | GCNGC | 6 cut(s) | 42, 105, 119, 273, 324, 333 |
| FspBI | CTAG | 2 cut(s) | 371, 386 |
| GluI | GCNGC | 6 cut(s) | 42, 105, 119, 273, 324, 333 |
| GsuI | CTGGAG | 2 cut(s) | 648, 711 |
| HaeIII | GGCC | 3 cut(s) | 121, 242, 505 |
| HapII | CCGG | 1 cut(s) | 122 |
| Hin1II | CATG | 3 cut(s) | 68, 74, 676 |
| HincII | GTYRAC | 1 cut(s) | 670 |
| HindII | GTYRAC | 1 cut(s) | 670 |
| HindIII | AAGCTT | 2 cut(s) | 310, 637 |
| HinfI | GANTC | 2 cut(s) | 210, 521 |
| HpaII | CCGG | 1 cut(s) | 122 |
| HphI | GGTGA | 1 cut(s) | 466 |
| Hpy166II | GTNNAC | 2 cut(s) | 670, 784 |
| Hpy188I | TCNGA | 3 cut(s) | 237, 261, 526 |
| Hpy188III | TCNNGA | 4 cut(s) | 339, 386, 719, 728 |
| Hpy8I | GTNNAC | 2 cut(s) | 670, 784 |
| HpyAV | CCTTC | 2 cut(s) | 24, 406 |
| HpyCH4III | ACNGT | 2 cut(s) | 95, 762 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 33, 50, 118, 309, 323, 329, 332 |
| HpyF3I | CTNAG | 3 cut(s) | 86, 258, 422 |
| Hsp92II | CATG | 3 cut(s) | 68, 74, 676 |
| KroI | GCCGGC | 1 cut(s) | 121 |
| KroNI | GCCGGC | 1 cut(s) | 123 |
| Kzo9I | GATC | 2 cut(s) | 232, 742 |
| LmnI | GCTCC | 3 cut(s) | 33, 526, 815 |
| Lsp1109I | GCAGC | 5 cut(s) | 28, 91, 259, 319, 335 |
| LweI | GCATC | 3 cut(s) | 17, 344, 615 |
| MaeI | CTAG | 2 cut(s) | 371, 386 |
| MaeIII | GTNAC | 1 cut(s) | 184 |
| MalI | GATC | 2 cut(s) | 234, 744 |
| MboI | GATC | 2 cut(s) | 232, 742 |
| MboII | GAAGA | 6 cut(s) | 209, 298, 463, 475, 549, 642 |
| MfeI | CAATTG | 1 cut(s) | 592 |
| MhlI | GDGCHC | 2 cut(s) | 507, 531 |
| MlsI | TGGCCA | 1 cut(s) | 242 |
| MluCI | AATT | 4 cut(s) | 344, 446, 592, 682 |
| MluNI | TGGCCA | 1 cut(s) | 242 |
| MlyI | GAGTC | 1 cut(s) | 219 |
| MnlI | CCTC | 5 cut(s) | 313, 505, 577, 735, 783 |
| Mox20I | TGGCCA | 1 cut(s) | 242 |
| MroNI | GCCGGC | 1 cut(s) | 121 |
| MscI | TGGCCA | 1 cut(s) | 242 |
| MseI | TTAA | 3 cut(s) | 246, 348, 612 |
| MslI | CAYNNNNRTG | 2 cut(s) | 69, 614 |
| Msp20I | TGGCCA | 1 cut(s) | 242 |
| MspA1I | CMGCKG | 1 cut(s) | 332 |
| MspI | CCGG | 1 cut(s) | 122 |
| MspR9I | CCNGG | 1 cut(s) | 493 |
| MunI | CAATTG | 1 cut(s) | 592 |
| MvaI | CCWGG | 1 cut(s) | 493 |
| MvnI | CGCG | 1 cut(s) | 118 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 33, 50, 118, 309, 323, 329, 332 |
| NaeI | GCCGGC | 1 cut(s) | 123 |
| NdeII | GATC | 2 cut(s) | 232, 742 |
| NgoMIV | GCCGGC | 1 cut(s) | 121 |
| NlaIII | CATG | 3 cut(s) | 68, 74, 676 |
| NlaIV | GGNNCC | 3 cut(s) | 505, 678, 723 |
| NspI | RCATGY | 1 cut(s) | 68 |
| NspV | TTCGAA | 1 cut(s) | 306 |
| PaeI | GCATGC | 1 cut(s) | 68 |
| PdiI | GCCGGC | 1 cut(s) | 123 |
| PfeI | GAWTC | 1 cut(s) | 521 |
| PkrI | GCNGC | 6 cut(s) | 43, 106, 120, 274, 325, 334 |
| PleI | GAGTC | 1 cut(s) | 218 |
| PpsI | GAGTC | 1 cut(s) | 218 |
| PpuMI | RGGWCCY | 1 cut(s) | 721 |
| PshBI | ATTAAT | 2 cut(s) | 246, 612 |
| Psp124BI | GAGCTC | 1 cut(s) | 531 |
| Psp5II | RGGWCCY | 1 cut(s) | 721 |
| Psp6I | CCWGG | 1 cut(s) | 491 |
| PspGI | CCWGG | 1 cut(s) | 491 |
| PspN4I | GGNNCC | 3 cut(s) | 505, 678, 723 |
| PspOMI | GGGCCC | 1 cut(s) | 503 |
| PspPI | GGNCC | 4 cut(s) | 503, 504, 676, 721 |
| PspPPI | RGGWCCY | 1 cut(s) | 721 |
| PstI | CTGCAG | 1 cut(s) | 109 |
| PvuII | CAGCTG | 1 cut(s) | 332 |
| RseI | CAYNNNNRTG | 2 cut(s) | 69, 614 |
| SacI | GAGCTC | 1 cut(s) | 531 |
| SaqAI | TTAA | 3 cut(s) | 246, 348, 612 |
| SatI | GCNGC | 6 cut(s) | 42, 105, 119, 273, 324, 333 |
| Sau3AI | GATC | 2 cut(s) | 232, 742 |
| Sau96I | GGNCC | 4 cut(s) | 503, 504, 676, 721 |
| SchI | GAGTC | 1 cut(s) | 219 |
| ScrFI | CCNGG | 1 cut(s) | 493 |
| SduI | GDGCHC | 2 cut(s) | 507, 531 |
| SfaNI | GCATC | 3 cut(s) | 17, 344, 615 |
| SfcI | CTRYAG | 2 cut(s) | 105, 327 |
| SfuI | TTCGAA | 1 cut(s) | 306 |
| SinI | GGWCC | 2 cut(s) | 676, 721 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 69, 614 |
| SmlI | CTYRAG | 2 cut(s) | 58, 752 |
| SmoI | CTYRAG | 2 cut(s) | 58, 752 |
| SpeI | ACTAGT | 1 cut(s) | 370 |
| SphI | GCATGC | 1 cut(s) | 68 |
| Sse9I | AATT | 4 cut(s) | 344, 446, 592, 682 |
| SsiI | CCGC | 2 cut(s) | 118, 125 |
| SspMI | CTAG | 2 cut(s) | 371, 386 |
| SstI | GAGCTC | 1 cut(s) | 531 |
| StyD4I | CCNGG | 1 cut(s) | 491 |
| StyI | CCWWGG | 1 cut(s) | 655 |
| TaaI | ACNGT | 2 cut(s) | 95, 762 |
| TaqI | TCGA | 4 cut(s) | 98, 306, 443, 531 |
| TasI | AATT | 4 cut(s) | 344, 446, 592, 682 |
| TauI | GCSGC | 1 cut(s) | 121 |
| TfiI | GAWTC | 1 cut(s) | 521 |
| Tru1I | TTAA | 3 cut(s) | 246, 348, 612 |
| Tru9I | TTAA | 3 cut(s) | 246, 348, 612 |
| TscAI | CASTG | 2 cut(s) | 98, 114 |
| TseI | GCWGC | 5 cut(s) | 41, 104, 272, 323, 332 |
| TspDTI | ATGAA | 1 cut(s) | 87 |
| TspRI | CASTG | 2 cut(s) | 98, 114 |
| VpaK11BI | GGWCC | 2 cut(s) | 676, 721 |
| VspI | ATTAAT | 2 cut(s) | 246, 612 |
| XapI | RAATTY | 3 cut(s) | 344, 446, 682 |
| XbaI | TCTAGA | 1 cut(s) | 385 |
| XceI | RCATGY | 1 cut(s) | 68 |
| XspI | CTAG | 2 cut(s) | 371, 386 |