Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010960

Physical Location & Seq

Genomic Coordinates Forward (+)

51790994 .. 51794456

Gene Structure 3463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG330800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAAGCATCACATTTCTTACAAAGCAGCAGCTTTGTTACAACTCTGCCTCACCAGAGGCATATGCATGCTCATAAGCTGAGGCGCTCTCAGATCGTTGCAGTGCTTTCAACGCCGGCGGATATCATAAACATAGGGGCAGATAAAAGCAGTATAAGACCAGCAGATGGTGCAGCAGAAAAGAAAAGTGTCTATAATGATAACTGGTTCGATAAACTGGCCATTGATCATCTGTCTCAAAATGTCCAAGCTGCATCAGGGTTGAGAAACAGCAAGACTGGATTCAAAAGCTTGGTAGAGGCAGCTAGCGCTGCGTCGCGAAACTTTAATCCAGAAAAACAAAGAGAAATAGTCGTTCAAGCTCTTCAGAGTGCATTTCCAAGGCCAATACTATCCCTGGTAAGTTCACAACAAAATCAGTTTCCATTATTGTTATTCTACTTCTGTTCTTTTTCTGTTTTCAGAACTACCATGATTATACTACCTTCATATTCTTTTTTTTCTCATAAAAATCAGAAAAAGAAAGGAATTCAATCATCCACTCACTGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009653 GO:0009987 GO:0010016 GO:0010223 GO:0010346 GO:0010817 GO:0016106 GO:0016114 GO:0016853 GO:0016859 GO:0018130 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

DUF4033

Protein Analysis

184

Amino Acids

20.6

Weight (kDa)

9.96

Isoelectric Point (pI)

54.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03055 AT1G03055
fragaria_vesca	FvH4_2g22790
malus_domestica	MD03G1256200.v1.1 MD11G1277000.v1.1
prunus_persica	Prupe.8G233300_v2.0.a1
pyrus_communis	pycom11g24500
rosa_chinensis	RchiOBHm_Chr6g0289711
rosa_laevigata	RLG00000012273
rosa_multiflora	Rmu_sc0005640.1_g000030
rosa_roxburghii	Rroxscaffold_7G00177620 Rroxscaffold_7G00178120
rosa_rugosa	Rorug06G0205900 Rorug06G0206000 Rorug06G0206000
rosa_samantha	Rh6AG317600 Rh6BG325200 Rh6CG330800 Rh6DG316500
rosa_wichuraiana	Rw6G027390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccII	CGCG	1 cut(s)	319
AciI	CCGC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	350
AfeI	AGCGCT	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	4 cut(s)	111, 286, 359, 533
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	6 cut(s)	33, 79, 251, 291, 305, 362
AluI	AGCT	6 cut(s)	33, 79, 251, 291, 305, 362
Alw26I	GTCTC	1 cut(s)	240
Aor51HI	AGCGCT	1 cut(s)	310
AoxI	GGCC	2 cut(s)	219, 383
ApeKI	GCWGC	6 cut(s)	27, 30, 173, 251, 302, 311
ApoI	RAATTY	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	87, 311
AsuHPI	GGTGA	1 cut(s)	44
AsuNHI	GCTAGC	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	221
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	6 cut(s)	39, 42, 185, 238, 298, 314
BccI	CCATC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	398
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	306
BfoI	RGCGCY	2 cut(s)	88, 312
BisI	GCNGC	6 cut(s)	28, 31, 174, 252, 303, 312
BlsI	GCNGC	6 cut(s)	29, 32, 175, 253, 304, 313
Bme1390I	CCNGG	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	2 cut(s)	17, 263
BmtI	GCTAGC	1 cut(s)	309
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
Bpu10I	CCTNAGC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	380, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	3 cut(s)	209, 222, 283
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	380, 396
BseGI	GGATG	1 cut(s)	536
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	2 cut(s)	71, 104
BseNI	ACTGG	3 cut(s)	209, 222, 283
BseXI	GCAGC	6 cut(s)	39, 42, 185, 238, 298, 314
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	319
BshFI	GGCC	2 cut(s)	221, 385
BsiSI	CCGG	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	221, 385
Bsp143I	GATC	2 cut(s)	93, 226
Bsp68I	TCGCGA	1 cut(s)	319
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	2 cut(s)	221, 385
BspCNI	CTCAG	2 cut(s)	72, 103
BspFNI	CGCG	1 cut(s)	319
BspOI	GCTAGC	1 cut(s)	309
BspQI	GCTCTTC	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	3 cut(s)	209, 222, 283
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	380, 396
BssMI	GATC	2 cut(s)	93, 226
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	69, 117, 307
BstDEI	CTNAG	2 cut(s)	80, 90
BstF5I	GGATG	1 cut(s)	536
BstFNI	CGCG	1 cut(s)	319
BstH2I	RGCGCY	2 cut(s)	88, 312
BstHHI	GCGC	2 cut(s)	87, 311
BstKTI	GATC	2 cut(s)	96, 229
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	2 cut(s)	93, 226
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 170, 308, 311
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	319
BstV1I	GCAGC	6 cut(s)	39, 42, 185, 238, 298, 314
BsuRI	GGCC	2 cut(s)	221, 385
BtsCI	GGATG	1 cut(s)	536
BtsI	GCAGTG	2 cut(s)	108, 544
BtsIMutI	CAGTG	2 cut(s)	108, 544
BtuMI	TCGCGA	1 cut(s)	319
Cac8I	GCNNGC	3 cut(s)	69, 117, 307
CfoI	GCGC	2 cut(s)	87, 311
Cfr10I	RCCGGY	1 cut(s)	115
CseI	GACGC	1 cut(s)	303
CviAII	CATG	2 cut(s)	68, 472
CviJI	RGCY	8 cut(s)	33, 79, 221, 251, 291, 305, 362, 385
CviKI_1	RGCY	8 cut(s)	33, 79, 221, 251, 291, 305, 362, 385
DdeI	CTNAG	2 cut(s)	80, 90
DpnI	GATC	2 cut(s)	95, 228
DpnII	GATC	2 cut(s)	93, 226
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	380
Eco32I	GATATC	1 cut(s)	124
Eco47III	AGCGCT	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	396
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	380
EcoT22I	ATGCAT	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	2 cut(s)	71, 475
FatI	CATG	2 cut(s)	67, 471
FauNDI	CATATG	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	6 cut(s)	28, 31, 174, 252, 303, 312
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	6 cut(s)	28, 31, 174, 252, 303, 312
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	2 cut(s)	86, 310
GluI	GCNGC	6 cut(s)	28, 31, 174, 252, 303, 312
HaeII	RGCGCY	2 cut(s)	88, 312
HaeIII	GGCC	2 cut(s)	221, 385
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	303
HhaI	GCGC	2 cut(s)	87, 311
Hin1II	CATG	2 cut(s)	71, 475
Hin6I	GCGC	2 cut(s)	85, 309
HinP1I	GCGC	2 cut(s)	85, 309
HindIII	AAGCTT	1 cut(s)	289
HinfI	GANTC	1 cut(s)	282
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	4 cut(s)	93, 369, 464, 516
Hpy188III	TCNNGA	2 cut(s)	318, 332
Hpy8I	GTNNAC	1 cut(s)	407
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	495
HpyCH4V	TGCA	5 cut(s)	67, 101, 173, 254, 374
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 170, 308, 311
HpyF3I	CTNAG	2 cut(s)	80, 90
Hsp92II	CATG	2 cut(s)	71, 475
HspAI	GCGC	2 cut(s)	85, 309
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	93, 226
LguI	GCTCTTC	1 cut(s)	369
Lsp1109I	GCAGC	6 cut(s)	39, 42, 185, 238, 298, 314
LweI	GCATC	2 cut(s)	17, 263
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	95, 228
MboI	GATC	2 cut(s)	93, 226
MboII	GAAGA	1 cut(s)	356
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	1 cut(s)	528
MluNI	TGGCCA	1 cut(s)	221
MnlI	CCTC	4 cut(s)	51, 60, 75, 292
Mox20I	TGGCCA	1 cut(s)	221
Mph1103I	ATGCAT	1 cut(s)	69
MreI	CGCCGGCG	1 cut(s)	115
MroNI	GCCGGC	1 cut(s)	115
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	2 cut(s)	327, 553
MslI	CAYNNNNRTG	1 cut(s)	66
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	4 cut(s)	112, 170, 308, 311
NaeI	GCCGGC	1 cut(s)	117
NdeI	CATATG	1 cut(s)	63
NdeII	GATC	2 cut(s)	93, 226
NgoMIV	GCCGGC	1 cut(s)	115
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	2 cut(s)	71, 475
NruI	TCGCGA	1 cut(s)	319
NsiI	ATGCAT	1 cut(s)	69
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	369
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	282
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	6 cut(s)	29, 32, 175, 253, 304, 313
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
RruI	TCGCGA	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	327, 553
SatI	GCNGC	6 cut(s)	28, 31, 174, 252, 303, 312
Sau3AI	GATC	2 cut(s)	93, 226
ScrFI	CCNGG	1 cut(s)	398
SetI	ASST	7 cut(s)	35, 81, 253, 293, 307, 364, 487
SfaNI	GCATC	2 cut(s)	17, 263
SgrAI	CRCCGGYG	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	66
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	1 cut(s)	528
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	380
TaqI	TCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	528
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	2 cut(s)	327, 553
Tru9I	TTAA	2 cut(s)	327, 553
TscAI	CASTG	2 cut(s)	108, 551
TseI	GCWGC	6 cut(s)	27, 30, 173, 251, 302, 311
TspDTI	ATGAA	1 cut(s)	477
TspRI	CASTG	2 cut(s)	108, 551
Van91I	CCANNNNNTGG	1 cut(s)	167
XapI	RAATTY	1 cut(s)	528
XceI	RCATGY	1 cut(s)	71
XspI	CTAG	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.