Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010960

Physical Location & Seq

Genomic Coordinates Forward (+)

39418852 .. 39422380

Gene Structure 3529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1277000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCTCTCCATGCACTCTTTGAGTTTTGTAACAACAACCCTGGCTCAACCAAGGCATGTACATGAACACAAGCTACGGCGTTGTTCGATCGTCGCGGTGCTTACAACGCCGGTGGAGAACATGAACATAGCAACAGACACAAGACCGGCAGATGCTGCAGTAGAAGGGAAAAGAGTTTACAAAGATAACTGGTTCGACCGAATGGCCATTAATCATCTGTCTCAGAATGTCCAAGCTGCAACAGGGTTGAGAAACAATAAGAGCGGGTATGAAAGCTTGGTTAAGGCAGCAACAGTTGCATCCAGGAAGTTTAATCCAGCAAAACAGAGAGAACTAGTTCTTCAAGCTCTTGATACTGCCTTCCCAAAGCCAGTATTTTCCTTGCTTAGAACAATCCTACCTGACTCGAAATTTGCCAGGGAATACTTCGCAGTCTTCACCACCATCTTCTTTGCCTGGTTGGTGGGACCCTGTGAGGTAAAGGAATTGGAGCTCAATGGAAGAAAAGAGAAAAATGTAGTGTACATCAAGAAGTGCAGGTTTTTGGAGGAAACCAATTGTGTAGGGATGTGCCTTAATATGTGCAAGGTGCCATCTCAAAGCTTCATCAAGACTTCCCTTGGAACTCCTGTCAACATGGTTCCAAATTTTGATGATATGAGCTGTGAGATGATATTTGGTCAGGACCCTCCAGACATATCCAACGATCCAGCACTCAAGCAACCATGCTACAAACTATGCAAAGTAAATAAAAGGCACAACAGTAATGACTGCTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009653 GO:0009987 GO:0010016 GO:0010223 GO:0010346 GO:0010817 GO:0016106 GO:0016114 GO:0016853 GO:0016859 GO:0018130 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

DUF4033

Protein Analysis

261

Amino Acids

29.37

Weight (kDa)

9.14

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
D27-like_C	PF13225	153 - 234	2.2e-34	Beta-carotene isomerase D27-like, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03055 AT1G03055
fragaria_vesca	FvH4_2g22790
malus_domestica	MD03G1256200.v1.1 MD11G1277000.v1.1
prunus_persica	Prupe.8G233300_v2.0.a1
pyrus_communis	pycom11g24500
rosa_chinensis	RchiOBHm_Chr6g0289711
rosa_laevigata	RLG00000012273
rosa_multiflora	Rmu_sc0005640.1_g000030
rosa_roxburghii	Rroxscaffold_7G00177620 Rroxscaffold_7G00178120
rosa_rugosa	Rorug06G0205900 Rorug06G0206000 Rorug06G0206000
rosa_samantha	Rh6AG317600 Rh6BG325200 Rh6CG330800 Rh6DG316500
rosa_wichuraiana	Rw6G027390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	589
AccBSI	CCGCTC	1 cut(s)	264
AccII	CGCG	1 cut(s)	95
AciI	CCGC	2 cut(s)	95, 264
AclWI	GGATC	1 cut(s)	701
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	410, 646
AfaI	GTAC	2 cut(s)	60, 524
AgsI	TTSAA	1 cut(s)	344
AhlI	ACTAGT	1 cut(s)	334
AjnI	CCWGG	4 cut(s)	39, 302, 416, 455
AluBI	AGCT	7 cut(s)	73, 236, 276, 347, 493, 603, 663
AluI	AGCT	7 cut(s)	73, 236, 276, 347, 493, 603, 663
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	701
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	155, 236, 287
ApoI	RAATTY	2 cut(s)	410, 646
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AseI	ATTAAT	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	467, 685
AsuHPI	GGTGA	1 cut(s)	430
AvaII	GGWCC	2 cut(s)	467, 685
BalI	TGGCCA	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	3 cut(s)	142, 223, 299
BccI	CCATC	2 cut(s)	452, 601
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	4 cut(s)	41, 304, 418, 457
BcoDI	GTCTC	1 cut(s)	225
BcuI	ACTAGT	1 cut(s)	334
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	528
BisI	GCNGC	3 cut(s)	156, 237, 288
BlsI	GCNGC	3 cut(s)	157, 238, 289
Bme1390I	CCNGG	4 cut(s)	41, 304, 418, 457
Bme18I	GGWCC	2 cut(s)	467, 685
BmgT120I	GGNCC	2 cut(s)	467, 685
BmiI	GGNNCC	5 cut(s)	468, 469, 591, 642, 687
BmrFI	CCNGG	4 cut(s)	41, 304, 418, 457
BmsI	GCATC	2 cut(s)	142, 308
BpiI	GAAGAC	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	701
BsaJI	CCNNGG	4 cut(s)	39, 50, 417, 619
Bse118I	RCCGGY	2 cut(s)	109, 145
Bse1I	ACTGG	2 cut(s)	194, 371
BseBI	CCWGG	4 cut(s)	41, 304, 418, 457
BseDI	CCNNGG	4 cut(s)	39, 50, 417, 619
BseGI	GGATG	2 cut(s)	299, 573
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	2 cut(s)	194, 371
BseXI	GCAGC	3 cut(s)	142, 223, 299
BsgI	GTGCAG	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	95
Bsh1285I	CGRYCG	2 cut(s)	90, 199
BshFI	GGCC	1 cut(s)	206
BshNI	GGYRCC	1 cut(s)	589
BsiEI	CGRYCG	2 cut(s)	90, 199
BsiHKAI	GWGCWC	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	110, 146
BslFI	GGGAC	1 cut(s)	480
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp1407I	TGTACA	2 cut(s)	58, 522
Bsp143I	GATC	2 cut(s)	87, 706
BspACI	CCGC	2 cut(s)	95, 264
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	5 cut(s)	468, 469, 591, 642, 687
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	528
BspPI	GGATC	1 cut(s)	701
BspT107I	GGYRCC	1 cut(s)	589
BsrBI	CCGCTC	1 cut(s)	264
BsrFI	RCCGGY	2 cut(s)	109, 145
BsrGI	TGTACA	2 cut(s)	58, 522
BsrI	ACTGG	2 cut(s)	194, 371
BssAI	RCCGGY	2 cut(s)	109, 145
BssECI	CCNNGG	4 cut(s)	39, 50, 417, 619
BssMI	GATC	2 cut(s)	87, 706
BssT1I	CCWWGG	2 cut(s)	50, 619
Bst2UI	CCWGG	4 cut(s)	41, 304, 418, 457
Bst4CI	ACNGT	2 cut(s)	295, 764
BstAPI	GCANNNNNTGC	2 cut(s)	155, 296
BstAUI	TGTACA	2 cut(s)	58, 522
BstDEI	CTNAG	2 cut(s)	222, 386
BstF5I	GGATG	2 cut(s)	299, 573
BstFNI	CGCG	1 cut(s)	95
BstKTI	GATC	2 cut(s)	90, 709
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	2 cut(s)	87, 706
BstMCI	CGRYCG	2 cut(s)	90, 199
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 106, 155, 296
BstNI	CCWGG	4 cut(s)	41, 304, 418, 457
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	4 cut(s)	39, 302, 416, 455
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	142, 223, 299
BstV2I	GAAGAC	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	299, 573
BveI	ACCTGC	1 cut(s)	528
CaiI	CAGNNNCTG	1 cut(s)	155
Cfr10I	RCCGGY	2 cut(s)	109, 145
Cfr13I	GGNCC	2 cut(s)	467, 685
Csp6I	GTAC	2 cut(s)	59, 523
CspCI	CAANNNNNGTGG	2 cut(s)	93, 128
CviAII	CATG	6 cut(s)	10, 56, 62, 121, 637, 726
CviQI	GTAC	2 cut(s)	59, 523
DdeI	CTNAG	2 cut(s)	222, 386
DpnI	GATC	2 cut(s)	89, 708
DpnII	GATC	2 cut(s)	87, 706
EaeI	YGGCCR	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	493
Eco130I	CCWWGG	2 cut(s)	50, 619
Eco24I	GRGCYC	1 cut(s)	495
Eco47I	GGWCC	2 cut(s)	467, 685
Eco53kI	GAGCTC	1 cut(s)	493
EcoICRI	GAGCTC	1 cut(s)	493
EcoO109I	RGGNCCY	2 cut(s)	467, 685
EcoRII	CCWGG	4 cut(s)	39, 302, 416, 455
EcoT14I	CCWWGG	2 cut(s)	50, 619
EcoT38I	GRGCYC	1 cut(s)	495
ErhI	CCWWGG	2 cut(s)	50, 619
FaeI	CATG	6 cut(s)	13, 59, 65, 124, 640, 729
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	6 cut(s)	9, 55, 61, 120, 636, 725
FauI	CCCGC	1 cut(s)	257
Fnu4HI	GCNGC	3 cut(s)	156, 237, 288
FokI	GGATG	2 cut(s)	286, 580
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	3 cut(s)	156, 237, 288
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	3 cut(s)	156, 237, 288
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	2 cut(s)	110, 146
Hin1II	CATG	6 cut(s)	13, 59, 65, 124, 640, 729
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	2 cut(s)	274, 601
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	2 cut(s)	110, 146
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	3 cut(s)	178, 523, 634
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	5 cut(s)	350, 529, 610, 683, 692
Hpy8I	GTNNAC	3 cut(s)	178, 523, 634
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	158, 370
HpyCH4III	ACNGT	2 cut(s)	295, 764
HpyCH4V	TGCA	7 cut(s)	13, 158, 239, 299, 537, 585, 741
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 106, 155, 296
HpyF3I	CTNAG	2 cut(s)	222, 386
Hsp92II	CATG	6 cut(s)	13, 59, 65, 124, 640, 729
KflI	GGGWCCC	1 cut(s)	467
Kzo9I	GATC	2 cut(s)	87, 706
LmnI	GCTCC	2 cut(s)	490, 779
Lsp1109I	GCAGC	3 cut(s)	142, 223, 299
LweI	GCATC	2 cut(s)	142, 308
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	89, 708
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	2 cut(s)	87, 706
MboII	GAAGA	4 cut(s)	332, 427, 439, 513
MfeI	CAATTG	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	495
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	4 cut(s)	410, 485, 556, 646
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	726
MnlI	CCTC	3 cut(s)	469, 541, 699
Mox20I	TGGCCA	1 cut(s)	206
MroXI	GAANNNNTTC	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	4 cut(s)	210, 282, 312, 576
MslI	CAYNNNNRTG	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	206
MspI	CCGG	2 cut(s)	110, 146
MspR9I	CCNGG	4 cut(s)	41, 304, 418, 457
MunI	CAATTG	1 cut(s)	556
MvaI	CCWGG	4 cut(s)	41, 304, 418, 457
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	4 cut(s)	10, 106, 155, 296
NdeII	GATC	2 cut(s)	87, 706
NlaIII	CATG	6 cut(s)	13, 59, 65, 124, 640, 729
NlaIV	GGNNCC	5 cut(s)	468, 469, 591, 642, 687
NspI	RCATGY	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	336
PfoI	TCCNGGA	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	157, 238, 289
Ple19I	CGATCG	1 cut(s)	90
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PpuMI	RGGWCCY	2 cut(s)	467, 685
PshBI	ATTAAT	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	495
Psp5II	RGGWCCY	2 cut(s)	467, 685
Psp6I	CCWGG	4 cut(s)	39, 302, 416, 455
PspGI	CCWGG	4 cut(s)	39, 302, 416, 455
PspN4I	GGNNCC	5 cut(s)	468, 469, 591, 642, 687
PspPI	GGNCC	2 cut(s)	467, 685
PspPPI	RGGWCCY	2 cut(s)	467, 685
PsrI	GAACNNNNNNTAC	2 cut(s)	57, 89
PstI	CTGCAG	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	155
PvuI	CGATCG	1 cut(s)	90
RsaI	GTAC	2 cut(s)	60, 524
RsaNI	GTAC	2 cut(s)	59, 523
RseI	CAYNNNNRTG	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	210, 282, 312, 576
SatI	GCNGC	3 cut(s)	156, 237, 288
Sau3AI	GATC	2 cut(s)	87, 706
Sau96I	GGNCC	2 cut(s)	467, 685
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	4 cut(s)	41, 304, 418, 457
SduI	GDGCHC	1 cut(s)	495
SfaNI	GCATC	2 cut(s)	142, 308
SfcI	CTRYAG	1 cut(s)	156
SgrAI	CRCCGGYG	1 cut(s)	109
SinI	GGWCC	2 cut(s)	467, 685
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
SpeI	ACTAGT	1 cut(s)	334
Sse9I	AATT	4 cut(s)	410, 485, 556, 646
SsiI	CCGC	2 cut(s)	95, 264
SspMI	CTAG	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	4 cut(s)	39, 302, 416, 455
StyI	CCWWGG	2 cut(s)	50, 619
TaaI	ACNGT	2 cut(s)	295, 764
TaqI	TCGA	3 cut(s)	86, 195, 407
TaqII	GACCGA	1 cut(s)	213
TasI	AATT	4 cut(s)	410, 485, 556, 646
TatI	WGTACW	2 cut(s)	58, 522
Tru1I	TTAA	4 cut(s)	210, 282, 312, 576
Tru9I	TTAA	4 cut(s)	210, 282, 312, 576
TseI	GCWGC	3 cut(s)	155, 236, 287
TspDTI	ATGAA	4 cut(s)	78, 137, 285, 595
VpaK11BI	GGWCC	2 cut(s)	467, 685
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	2 cut(s)	410, 646
XceI	RCATGY	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.