AT1G03510

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013453
Physical Location & Seq
Reverse (-)
876087 .. 877556
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03510.1

Sequence Viewer

Length: 1290 bp
ATGTCTTCTTCGTACGCGTCGAGCTGCACTAAATTGATCTCTCTCACCAAACAATTAAGCTCTTACGCGAACCAAGGAAACCATGAACAAGCTCTTAATCTCTTTCTTCAAATGCATTCTTCTTTCGCCTTACCTCTCGATGCACACGTCTTCTCACTCGCTCTCAAATCGTGCGCTGCAGCTTTCCGTCCTGTTCTCGGTGGATCAGTCCATGCACACTCCGTCAAATCCAATTTTCTGTCGAACCCATTTGTTGGATGCGCGTTACTCGATATGTATGGTAAATGCTTGTCTGTTTCTCATGCTCGTAAACTGTTCGACGAAATTCCTCAGAGGAATGCGGTAGTATGGAACGCGATGATTTCGCATTACACACATTGTGGGAAGGTTAAGGAAGCAGTGGAGTTGTATGAAGCTATGGATGTTATGCCAAATGAGTCTTCTTTCAATGCTATCATAAAGGGTTTAGTTGGTACAGAAGATGGGTCTTATAGAGCTATTGAATTCTATAGGAAGATGATAGAGTTTAGATTCAAGCCTAATTTGATTACCCTTCTTGCGTTAGTATCTGCTTGCTCAGCCATTGGGGCTTTTCGTTTAATAAAAGAGATCCATTCATATGCTTTTAGGAATCTAATTGAGCCGCACCCTCAGTTGAAAAGCGGGTTAGTAGAGGCGTATGGGAGGTGTGGAAGCATTGTCTATGTGCAATTGGTGTTTGATAGCATGGAAGATAGGGATGTGGTTGCTTGGAGTAGCTTGATATCCGCTTATGCACTTCACGGTGACGCGGAATCTGCTCTAAAAACATTTCAAGAAATGGAATTGGCGAAAGTAACACCGGATGACATAGCGTTTCTGAACGTGCTAAAGGCTTGTAGTCACGCTGGTTTAGCTGATGAGGCTCTTGTATACTTTAAGAGAATGCAGGGAGATTACGGTTTGCGTGCAAGCAAGGATCATTACTCGTGTTTGGTGGATGTCTTAAGCAGAGTAGGGAGATTTGAAGAAGCTTATAAAGTGATTCAAGCTATGCCTGAGAAGCCAACGGCTAAGACATGGGGGGCTTTGCTTGGAGCTTGTAGGAACTACGGTGAGATTGAGCTAGCAGAGATTGCTGCAAGAGAATTGTTGATGGTAGAGCCAGAGAATCCCGCGAATTATGTGTTGTTGGGGAAGATATATATGAGTGTTGGAAGACAAGAAGAGGCAGAGAGACTTAGATTGAAGATGAAGGAGAGTGGAGTGAAGGTTTCACCAGGTAGTAGTTGGTGTTTGTTCAAAGATTGA

Protein Analysis

429

Amino Acids

47.58

Weight (kDa)

6.89

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 113 - 157 1e-09 PPR repeat family
PPR PF01535 115 - 140 1e-05 PPR repeat
PPR_2 PF13041 246 - 294 5.9e-08 PPR repeat family
PPR PF01535 249 - 275 5.7e-06 PPR repeat
PPR_long PF17177 260 - 404 6.7e-06 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 364 - 424 4.3e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03510
fragaria_vesca FvH4_6g44770
malus_domestica MD09G1093700.v1.1 MD17G1083400.v1.1
prunus_persica Prupe.3G231700_v2.0.a1
pyrus_communis pycom09g01890 pycom17g08120
rosa_chinensis RchiOBHm_Chr2g0161921
rosa_laevigata RLG00000021307
rosa_multiflora Rmu_sc0008565.1_g000004 Rmu_sc0018381.1_g000006
rosa_roxburghii Rroxscaffold_2G00088460
rosa_rugosa Rorug02G0493200
rosa_samantha Rh2AG559100 Rh2BG572500 Rh2CG542800 Rh2DG582300
rosa_wichuraiana Rw2G046280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1017
AccB7I CCANNNNNTGG 1 cut(s) 254
AccI GTMKAC 1 cut(s) 912
AccII CGCG 6 cut(s) 17, 68, 263, 356, 791, 1157
AciI CCGC 6 cut(s) 341, 644, 663, 768, 791, 1155
AclWI GGATC 3 cut(s) 211, 604, 966
AcsI RAATTY 2 cut(s) 324, 503
AdeI CACNNNGTG 1 cut(s) 380
AfaI GTAC 2 cut(s) 14, 475
AfiI CCNNNNNNNGG 2 cut(s) 197, 254
AflII CTTAAG 1 cut(s) 985
AflIII ACRYGT 2 cut(s) 15, 145
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 1258
AjuI GAANNNNNNNTTGG 2 cut(s) 424, 456
Alw26I GTCTC 1 cut(s) 1210
AlwI GGATC 3 cut(s) 211, 604, 966
ApeKI GCWGC 4 cut(s) 24, 176, 179, 1118
ApoI RAATTY 2 cut(s) 324, 503
AspLEI GCGC 2 cut(s) 176, 263
AsuHPI GGTGA 4 cut(s) 37, 797, 1106, 1248
AsuNHI GCTAGC 1 cut(s) 1105
BauI CACGAG 1 cut(s) 967
BbsI GAAGAC 3 cut(s) 142, 432, 1204
BbvI GCAGC 4 cut(s) 11, 163, 191, 1105
BccI CCATC 2 cut(s) 476, 1129
BceAI ACGGC 1 cut(s) 1065
BciT130I CCWGG 1 cut(s) 1260
BcoDI GTCTC 1 cut(s) 1210
BfaI CTAG 1 cut(s) 1106
BfmI CTRYAG 2 cut(s) 177, 508
BfrI CTTAAG 1 cut(s) 985
BglI GCCNNNNNGGC 1 cut(s) 587
BisI GCNGC 5 cut(s) 25, 177, 180, 644, 1119
BlpI GCTNAGC 1 cut(s) 577
BlsI GCNGC 5 cut(s) 26, 178, 181, 645, 1120
Bme1390I CCNGG 1 cut(s) 1260
BmgBI CACGTC 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 1260
BmsI GCATC 2 cut(s) 130, 248
BmtI GCTAGC 1 cut(s) 1109
BpiI GAAGAC 3 cut(s) 142, 432, 1204
Bpu1102I GCTNAGC 1 cut(s) 577
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 841
BsaXI ACNNNNNCTCC 2 cut(s) 1236, 1266
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 254
BseBI CCWGG 1 cut(s) 1260
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 5 cut(s) 263, 427, 745, 850, 985
BseLI CCNNNNNNNGG 2 cut(s) 197, 254
BseMII CTCAG 4 cut(s) 344, 591, 665, 1029
BseXI GCAGC 4 cut(s) 11, 163, 191, 1105
BsgI GTGCAG 1 cut(s) 10
Bsh1236I CGCG 6 cut(s) 17, 68, 263, 356, 791, 1157
BsiSI CCGG 1 cut(s) 842
BsiWI CGTACG 1 cut(s) 12
BslI CCNNNNNNNGG 2 cut(s) 197, 254
BsmAI GTCTC 1 cut(s) 1210
BsmI GAATGC 3 cut(s) 115, 343, 930
Bsp143I GATC 4 cut(s) 36, 203, 609, 958
Bsp1720I GCTNAGC 1 cut(s) 577
BspACI CCGC 6 cut(s) 341, 644, 663, 768, 791, 1155
BspCNI CTCAG 4 cut(s) 343, 590, 664, 1030
BspFNI CGCG 6 cut(s) 17, 68, 263, 356, 791, 1157
BspMAI CTGCAG 1 cut(s) 181
BspOI GCTAGC 1 cut(s) 1109
BspPI GGATC 3 cut(s) 211, 604, 966
BspTI CTTAAG 1 cut(s) 985
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 4 cut(s) 36, 203, 609, 958
BssNAI GTATAC 1 cut(s) 913
BssSI CACGAG 1 cut(s) 967
BssT1I CCWWGG 1 cut(s) 73
Bst1107I GTATAC 1 cut(s) 913
Bst2BI CACGAG 1 cut(s) 967
Bst2UI CCWGG 1 cut(s) 1260
Bst4CI ACNGT 4 cut(s) 315, 785, 941, 1094
Bst6I CTCTTC 1 cut(s) 1200
BstAFI CTTAAG 1 cut(s) 985
BstAPI GCANNNNNTGC 1 cut(s) 1115
BstC8I GCNNGC 4 cut(s) 574, 948, 952, 1107
BstDEI CTNAG 6 cut(s) 330, 577, 651, 1038, 1053, 1220
BstF5I GGATG 5 cut(s) 263, 427, 745, 850, 985
BstFNI CGCG 6 cut(s) 17, 68, 263, 356, 791, 1157
BstHHI GCGC 2 cut(s) 176, 263
BstKTI GATC 4 cut(s) 39, 206, 612, 961
BstMAI GTCTC 1 cut(s) 1210
BstMBI GATC 4 cut(s) 36, 203, 609, 958
BstMWI GCNNNNNNNGC 7 cut(s) 578, 587, 797, 893, 902, 1042, 1115
BstNI CCWGG 1 cut(s) 1260
BstSCI CCNGG 1 cut(s) 1258
BstSFI CTRYAG 2 cut(s) 177, 508
BstUI CGCG 6 cut(s) 17, 68, 263, 356, 791, 1157
BstV1I GCAGC 4 cut(s) 11, 163, 191, 1105
BstV2I GAAGAC 3 cut(s) 142, 432, 1204
BstX2I RGATCY 1 cut(s) 609
BstYI RGATCY 1 cut(s) 609
BstZ17I GTATAC 1 cut(s) 913
BtgZI GCGATG 1 cut(s) 371
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 5 cut(s) 263, 427, 745, 850, 985
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 4 cut(s) 574, 948, 952, 1107
CfoI GCGC 2 cut(s) 176, 263
CseI GACGC 2 cut(s) 6, 797
CsiI ACCWGGT 1 cut(s) 1258
Csp6I GTAC 2 cut(s) 13, 474
CviAII CATG 5 cut(s) 83, 212, 302, 727, 1059
CviQI GTAC 2 cut(s) 13, 474
DdeI CTNAG 6 cut(s) 330, 577, 651, 1038, 1053, 1220
DpnI GATC 4 cut(s) 38, 205, 611, 960
DpnII GATC 4 cut(s) 36, 203, 609, 958
DraIII CACNNNGTG 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 1200
EarI CTCTTC 1 cut(s) 1200
Eco130I CCWWGG 1 cut(s) 73
Eco32I GATATC 1 cut(s) 765
EcoRI GAATTC 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 1258
EcoRV GATATC 1 cut(s) 765
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 5 cut(s) 86, 215, 305, 730, 1062
FatI CATG 5 cut(s) 82, 211, 301, 726, 1058
FauI CCCGC 2 cut(s) 656, 1162
FauNDI CATATG 1 cut(s) 619
FblI GTMKAC 1 cut(s) 912
Fnu4HI GCNGC 5 cut(s) 25, 177, 180, 644, 1119
FokI GGATG 5 cut(s) 270, 434, 752, 857, 992
Fsp4HI GCNGC 5 cut(s) 25, 177, 180, 644, 1119
FspBI CTAG 1 cut(s) 1106
GlaI GCGC 2 cut(s) 175, 262
GluI GCNGC 5 cut(s) 25, 177, 180, 644, 1119
HapII CCGG 1 cut(s) 842
HgaI GACGC 2 cut(s) 6, 797
HhaI GCGC 2 cut(s) 176, 263
Hin1II CATG 5 cut(s) 86, 215, 305, 730, 1062
Hin6I GCGC 2 cut(s) 174, 261
HinP1I GCGC 2 cut(s) 174, 261
HindIII AAGCTT 1 cut(s) 1011
HinfI GANTC 6 cut(s) 437, 531, 631, 794, 1024, 1150
HpaII CCGG 1 cut(s) 842
HphI GGTGA 4 cut(s) 37, 797, 1106, 1248
Hpy166II GTNNAC 2 cut(s) 311, 913
Hpy188I TCNGA 2 cut(s) 333, 861
Hpy188III TCNNGA 2 cut(s) 137, 815
Hpy8I GTNNAC 2 cut(s) 311, 913
Hpy99I CGWCG 2 cut(s) 22, 323
HpyAV CCTTC 4 cut(s) 379, 563, 1228, 1243
HpyCH4III ACNGT 4 cut(s) 315, 785, 941, 1094
HpyCH4IV ACGT 2 cut(s) 147, 864
HpyF10VI GCNNNNNNNGC 7 cut(s) 578, 587, 797, 893, 902, 1042, 1115
HpyF3I CTNAG 6 cut(s) 330, 577, 651, 1038, 1053, 1220
HpySE526I ACGT 2 cut(s) 147, 864
Hsp92II CATG 5 cut(s) 86, 215, 305, 730, 1062
HspAI GCGC 2 cut(s) 174, 261
Kzo9I GATC 4 cut(s) 36, 203, 609, 958
LmnI GCTCC 1 cut(s) 1076
LpnPI CCDG 8 cut(s) 204, 855, 873, 914, 1050, 1158, 1245, 1272
Lsp1109I GCAGC 4 cut(s) 11, 163, 191, 1105
LweI GCATC 2 cut(s) 130, 248
MabI ACCWGGT 1 cut(s) 1258
MaeI CTAG 1 cut(s) 1106
MaeII ACGT 2 cut(s) 147, 864
MaeIII GTNAC 4 cut(s) 264, 785, 835, 881
MalI GATC 4 cut(s) 38, 205, 611, 960
MboI GATC 4 cut(s) 36, 203, 609, 958
MfeI CAATTG 1 cut(s) 710
MflI RGATCY 1 cut(s) 609
MluI ACGCGT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 2 cut(s) 235, 1174
MnlI CCTC 8 cut(s) 144, 327, 339, 660, 667, 678, 895, 1201
Mph1103I ATGCAT 1 cut(s) 117
MseI TTAA 6 cut(s) 56, 96, 390, 599, 918, 986
MslI CAYNNNNRTG 1 cut(s) 618
MspCI CTTAAG 1 cut(s) 985
MspI CCGG 1 cut(s) 842
MspR9I CCNGG 1 cut(s) 1260
MunI CAATTG 1 cut(s) 710
Mva1269I GAATGC 3 cut(s) 115, 343, 930
MvaI CCWGG 1 cut(s) 1260
MvnI CGCG 6 cut(s) 17, 68, 263, 356, 791, 1157
MwoI GCNNNNNNNGC 7 cut(s) 578, 587, 797, 893, 902, 1042, 1115
NdeI CATATG 1 cut(s) 619
NdeII GATC 4 cut(s) 36, 203, 609, 958
NheI GCTAGC 1 cut(s) 1105
NlaIII CATG 5 cut(s) 86, 215, 305, 730, 1062
NmuCI GTSAC 2 cut(s) 785, 881
NsiI ATGCAT 1 cut(s) 117
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 144
PctI GAATGC 3 cut(s) 115, 343, 930
PfeI GAWTC 5 cut(s) 531, 631, 794, 1024, 1150
Pfl23II CGTACG 1 cut(s) 12
PflMI CCANNNNNTGG 1 cut(s) 254
PkrI GCNGC 5 cut(s) 26, 178, 181, 645, 1120
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PsiI TTATAA 1 cut(s) 1017
Psp6I CCWGG 1 cut(s) 1258
PspGI CCWGG 1 cut(s) 1258
PspLI CGTACG 1 cut(s) 12
PstI CTGCAG 1 cut(s) 181
PsuI RGATCY 1 cut(s) 609
RsaI GTAC 2 cut(s) 14, 475
RsaNI GTAC 2 cut(s) 13, 474
RseI CAYNNNNRTG 1 cut(s) 618
SaqAI TTAA 6 cut(s) 56, 96, 390, 599, 918, 986
SatI GCNGC 5 cut(s) 25, 177, 180, 644, 1119
Sau3AI GATC 4 cut(s) 36, 203, 609, 958
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 1 cut(s) 1260
SexAI ACCWGGT 1 cut(s) 1258
SfaNI GCATC 2 cut(s) 130, 248
SfcI CTRYAG 2 cut(s) 177, 508
SmiMI CAYNNNNRTG 1 cut(s) 618
SmlI CTYRAG 1 cut(s) 985
SmoI CTYRAG 1 cut(s) 985
SsiI CCGC 6 cut(s) 341, 644, 663, 768, 791, 1155
SspMI CTAG 1 cut(s) 1106
StyD4I CCNGG 1 cut(s) 1258
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 4 cut(s) 315, 785, 941, 1094
TaiI ACGT 2 cut(s) 150, 867
TaqI TCGA 5 cut(s) 20, 138, 242, 270, 318
TauI GCSGC 1 cut(s) 646
TfiI GAWTC 5 cut(s) 531, 631, 794, 1024, 1150
Tru1I TTAA 6 cut(s) 56, 96, 390, 599, 918, 986
Tru9I TTAA 6 cut(s) 56, 96, 390, 599, 918, 986
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 2 cut(s) 785, 881
TseI GCWGC 4 cut(s) 24, 176, 179, 1118
Tsp45I GTSAC 2 cut(s) 785, 881
TspDTI ATGAA 4 cut(s) 99, 426, 606, 1247
TspGWI ACGGA 2 cut(s) 176, 211
TspRI CASTG 1 cut(s) 405
Van91I CCANNNNNTGG 1 cut(s) 254
Vha464I CTTAAG 1 cut(s) 985
XapI RAATTY 2 cut(s) 324, 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 1266
XmiI GTMKAC 1 cut(s) 912
XspI CTAG 1 cut(s) 1106
Zsp2I ATGCAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.