FvH4_6g44770

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
34470539 .. 34471828
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44770.t1

Sequence Viewer

Length: 1290 bp
ATGGGCTCCTACAACACCCTATCACATTTCCAACGCTTGCTCTCTTTCACCAAGCAATTGACTTCCCACGTCAACCAAGGCAGCCATGACAAAGCCCTCACTCTCTTCCACCACATACAAGCCTCCCTTGCTCTCCCTCTCGACGCCCACGTCTTCTCCCTCATCCTCAAGTCCTGCTCCTCCCTCCGCCGCCCCCAACTCGGCGCCGCCGTCCACGCCCACGTCACCAAGTCGTCATTCCTCCCAAACCCTTATGTGGCTTCCGCTCTAGTCGACATGTACGGCAAATGCGTCTCGGTTTGGACCGCACGTCACTTGTTCGATGAAATTCCTCACAGAAATGTTGTTGTCTGGAACGCCATGATTTCGGTGTATACACGCAATGCTGACGTTGCTGAGGCTTTGAGGTTGTTTGAGGCTATGGATATTGAGCCTGATGTGGGGACTTATAACACTATTATGGCCGGAATGTCTGCGATGGACGATGGGTCGTTTCGAGCTGTGGAGGTGTATAGGAAGATGTGCGAAAGAGGGTGGAAGCCGGATTTGATCACATTGCTTGCTCTGTTACGTGCTTGTGTTGGTGTAGCAGCTTTTAGGTTTGTTAAAGAAATTCATGGCTATGATGTAAGGAATGGGATTGACTCGCGTTCGCAGCTGAGTAGTGGATTAGTAGAGGCCTACGGGCGCTGTGGTTGTGTCGAAAATGCGCATAGTGTGTTCTGGGGGTTGAAGGAAAAAGATGTGGTTGCGTGGAGCAGTTTGATATCAGTGTATGCGGTTCATGGAGAGGCGAGAGCTGCGTTTGATGTTTTTAGAGAAATGGAGTGGGCGAATGTTGTGCCTGATGAGATTACTTTTCTTGCGGTGTTGAAAGCGTGTAGCCATGCCGAAGGATTAGCTGATGAAGCACTGAGTTATTTTGATTGTATGCGTAGATATGGCTTGCGAGCCAACAGTGATCACTATTCTTGTTTAGTGGATGTGTTGAGCAGAGCAGGGAGGTTACGCGAGGCGTACGAGGTCATAAGGAAAATGCCAGTGAAGGTTACTGCTAGAGCTTGGGGTGCTCTTCTTTCGGGGTGTAGAACTTACGGAAACCTGGAGCTTGCGGAGATAGCAGGGAGAGCTCTGTCTGAACTTGAGCCTGATAATCCTTCCCATTATTTGTTGTTGTCGACGATTTATGTTAGCTTAGGACGGCACGATGAAGCTCATAGAATGAGAAGGGAAATGAGGCACAAAGGTGTTAAGGCAACGGTTGGAAGTAGTTGGATGGTTCAAGAGTGA

Protein Analysis

430

Amino Acids

47.95

Weight (kDa)

7.66

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 113 - 157 7.9e-10 PPR repeat family
PPR_2 PF13041 145 - 194 2.8e-07 PPR repeat family
PPR_2 PF13041 247 - 295 6e-10 PPR repeat family
PPR_long PF17177 252 - 350 2.8e-06 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 365 - 426 9.5e-14 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013453)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AasI GACNNNNNNGTC 1 cut(s) 149
Acc16I TGCGCA 1 cut(s) 711
AccB1I GGYRCC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 266
AccI GTMKAC 3 cut(s) 273, 374, 1178
AccII CGCG 2 cut(s) 649, 1011
AciI CCGC 8 cut(s) 187, 190, 207, 264, 306, 779, 866, 1112
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 2 cut(s) 327, 612
AcyI GRCGYC 2 cut(s) 144, 204
AfaI GTAC 2 cut(s) 281, 1019
AfiI CCNNNNNNNGG 3 cut(s) 200, 256, 440
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 3 cut(s) 733, 874, 1283
AhdI GACNNNNNGTC 2 cut(s) 309, 487
AjiI CACGTC 4 cut(s) 70, 151, 223, 311
AjnI CCWGG 1 cut(s) 1101
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AleI CACNNNNGTG 1 cut(s) 1245
Alw21I GWGCWC 2 cut(s) 1072, 1132
Alw26I GTCTC 1 cut(s) 298
AoxI GGCC 2 cut(s) 462, 678
ApeKI GCWGC 4 cut(s) 81, 590, 655, 800
ApoI RAATTY 2 cut(s) 327, 612
AspLEI GCGC 3 cut(s) 206, 690, 712
AspS9I GGNCC 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 40, 217
AvaII GGWCC 1 cut(s) 303
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 2 cut(s) 8, 1132
BbsI GAAGAC 1 cut(s) 145
Bbv12I GWGCWC 2 cut(s) 1072, 1132
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 4 cut(s) 93, 602, 667, 787
BccI CCATC 3 cut(s) 472, 479, 1270
BceAI ACGGC 3 cut(s) 194, 298, 1217
BcgI CGANNNNNNTGC 2 cut(s) 823, 857
BciT130I CCWGG 1 cut(s) 1103
BclI TGATCA 2 cut(s) 549, 961
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 2 cut(s) 269, 1056
BfoI RGCGCY 2 cut(s) 207, 691
BisI GCNGC 6 cut(s) 82, 190, 207, 591, 656, 801
BlsI GCNGC 6 cut(s) 83, 191, 208, 592, 657, 802
Bme1390I CCNGG 1 cut(s) 1103
Bme18I GGWCC 1 cut(s) 303
BmeRI GACNNNNNGTC 2 cut(s) 309, 487
BmgBI CACGTC 4 cut(s) 70, 151, 223, 311
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 2 cut(s) 7, 205
BmrFI CCNGG 1 cut(s) 1103
BpiI GAAGAC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 1124
Bpu10I CCTNAGC 2 cut(s) 396, 1195
BpuEI CTTGAG 2 cut(s) 152, 1163
BsaAI YACGTR 1 cut(s) 572
BsaHI GRCGYC 2 cut(s) 144, 204
BsaJI CCNNGG 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 256, 440
Bse1I ACTGG 1 cut(s) 1040
Bse3DI GCAATG 2 cut(s) 388, 554
BseBI CCWGG 1 cut(s) 1103
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 3 cut(s) 162, 988, 1281
BseLI CCNNNNNNNGG 3 cut(s) 200, 256, 440
BseMI GCAATG 2 cut(s) 388, 554
BseMII CTCAG 3 cut(s) 387, 650, 905
BseNI ACTGG 1 cut(s) 1040
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 4 cut(s) 93, 602, 667, 787
Bsh1236I CGCG 2 cut(s) 649, 1011
BshFI GGCC 2 cut(s) 464, 680
BshNI GGYRCC 1 cut(s) 203
BsiHKAI GWGCWC 2 cut(s) 1072, 1132
BsiSI CCGG 2 cut(s) 465, 542
BsiWI CGTACG 1 cut(s) 1017
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 3 cut(s) 200, 256, 440
BsmAI GTCTC 1 cut(s) 298
BsmBI CGTCTC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 2 cut(s) 464, 680
Bsp1286I GDGCHC 3 cut(s) 8, 1072, 1132
Bsp143I GATC 2 cut(s) 549, 961
BspACI CCGC 8 cut(s) 187, 190, 207, 264, 306, 779, 866, 1112
BspANI GGCC 2 cut(s) 464, 680
BspCNI CTCAG 3 cut(s) 388, 651, 906
BspFNI CGCG 2 cut(s) 649, 1011
BspLI GGNNCC 2 cut(s) 7, 205
BspQI GCTCTTC 1 cut(s) 1077
BspT107I GGYRCC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 266
BsrDI GCAATG 2 cut(s) 388, 554
BsrI ACTGG 1 cut(s) 1040
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 549, 961
BssNAI GTATAC 1 cut(s) 375
BssNI GRCGYC 2 cut(s) 144, 204
BssT1I CCWWGG 1 cut(s) 76
Bst1107I GTATAC 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 1103
Bst4CI ACNGT 2 cut(s) 959, 1261
Bst6I CTCTTC 2 cut(s) 110, 1077
BstACI GRCGYC 2 cut(s) 144, 204
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 5 cut(s) 38, 561, 947, 951, 1110
BstDEI CTNAG 4 cut(s) 396, 659, 914, 1195
BstF5I GGATG 3 cut(s) 162, 988, 1281
BstFNI CGCG 2 cut(s) 649, 1011
BstH2I RGCGCY 2 cut(s) 207, 691
BstHHI GCGC 3 cut(s) 206, 690, 712
BstKTI GATC 2 cut(s) 552, 964
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 2 cut(s) 549, 961
BstMWI GCNNNNNNNGC 9 cut(s) 128, 215, 392, 655, 800, 908, 1067, 1118, 1127
BstNI CCWGG 1 cut(s) 1103
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 1101
BstUI CGCG 2 cut(s) 649, 1011
BstV1I GCAGC 4 cut(s) 93, 602, 667, 787
BstV2I GAAGAC 1 cut(s) 145
BstZ17I GTATAC 1 cut(s) 375
BsuRI GGCC 2 cut(s) 464, 680
BtgZI GCGATG 1 cut(s) 491
BtrI CACGTC 4 cut(s) 70, 151, 223, 311
BtsCI GGATG 3 cut(s) 162, 988, 1281
BtsIMutI CAGTG 4 cut(s) 777, 911, 964, 1047
Cac8I GCNNGC 5 cut(s) 38, 561, 947, 951, 1110
CfoI GCGC 3 cut(s) 206, 690, 712
Cfr13I GGNCC 1 cut(s) 303
CseI GACGC 2 cut(s) 152, 280
Csp6I GTAC 2 cut(s) 280, 1018
CviAII CATG 6 cut(s) 86, 277, 361, 617, 785, 887
CviQI GTAC 2 cut(s) 280, 1018
DdeI CTNAG 4 cut(s) 396, 659, 914, 1195
DinI GGCGCC 1 cut(s) 205
DpnI GATC 2 cut(s) 551, 963
DpnII GATC 2 cut(s) 549, 961
DrdI GACNNNNNNGTC 1 cut(s) 149
DriI GACNNNNNGTC 2 cut(s) 309, 487
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 2 cut(s) 110, 1077
Eam1105I GACNNNNNGTC 2 cut(s) 309, 487
EarI CTCTTC 2 cut(s) 110, 1077
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 1130
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 680
Eco24I GRGCYC 2 cut(s) 8, 1132
Eco32I GATATC 1 cut(s) 768
Eco47I GGWCC 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 1130
EcoICRI GAGCTC 1 cut(s) 1130
EcoRII CCWGG 1 cut(s) 1101
EcoRV GATATC 1 cut(s) 768
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 2 cut(s) 8, 1132
EgeI GGCGCC 1 cut(s) 205
EheI GGCGCC 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 6 cut(s) 89, 280, 364, 620, 788, 890
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 1 cut(s) 457
FatI CATG 6 cut(s) 85, 276, 360, 616, 784, 886
FbaI TGATCA 2 cut(s) 549, 961
FblI GTMKAC 3 cut(s) 273, 374, 1178
Fnu4HI GCNGC 6 cut(s) 82, 190, 207, 591, 656, 801
FokI GGATG 2 cut(s) 149, 995
FriOI GRGCYC 2 cut(s) 8, 1132
Fsp4HI GCNGC 6 cut(s) 82, 190, 207, 591, 656, 801
FspAI RTGCGCAY 1 cut(s) 711
FspBI CTAG 2 cut(s) 269, 1056
FspI TGCGCA 1 cut(s) 711
GlaI GCGC 3 cut(s) 205, 689, 711
GluI GCNGC 6 cut(s) 82, 190, 207, 591, 656, 801
GsuI CTGGAG 1 cut(s) 1124
HaeII RGCGCY 2 cut(s) 207, 691
HaeIII GGCC 2 cut(s) 464, 680
HapII CCGG 2 cut(s) 465, 542
HgaI GACGC 2 cut(s) 152, 280
HhaI GCGC 3 cut(s) 206, 690, 712
Hin1I GRCGYC 2 cut(s) 144, 204
Hin1II CATG 6 cut(s) 89, 280, 364, 620, 788, 890
Hin6I GCGC 3 cut(s) 204, 688, 710
HinP1I GCGC 3 cut(s) 204, 688, 710
HincII GTYRAC 3 cut(s) 73, 274, 1179
HindII GTYRAC 3 cut(s) 73, 274, 1179
HinfI GANTC 1 cut(s) 644
HpaII CCGG 2 cut(s) 465, 542
HphI GGTGA 2 cut(s) 40, 217
Hpy166II GTNNAC 5 cut(s) 73, 214, 274, 375, 1179
Hpy188I TCNGA 1 cut(s) 1138
Hpy188III TCNNGA 3 cut(s) 140, 352, 1283
Hpy8I GTNNAC 5 cut(s) 73, 214, 274, 375, 1179
Hpy99I CGWCG 2 cut(s) 146, 1183
HpyAV CCTTC 5 cut(s) 727, 887, 1039, 1167, 1221
HpyCH4III ACNGT 2 cut(s) 959, 1261
HpyCH4IV ACGT 6 cut(s) 69, 150, 222, 310, 390, 571
HpyF10VI GCNNNNNNNGC 9 cut(s) 128, 215, 392, 655, 800, 908, 1067, 1118, 1127
HpyF3I CTNAG 4 cut(s) 396, 659, 914, 1195
HpySE526I ACGT 6 cut(s) 69, 150, 222, 310, 390, 571
Hsp92I GRCGYC 2 cut(s) 144, 204
Hsp92II CATG 6 cut(s) 89, 280, 364, 620, 788, 890
HspAI GCGC 3 cut(s) 204, 688, 710
KasI GGCGCC 1 cut(s) 203
Ksp22I TGATCA 2 cut(s) 549, 961
Kzo9I GATC 2 cut(s) 549, 961
LguI GCTCTTC 1 cut(s) 1077
LmnI GCTCC 4 cut(s) 11, 182, 756, 1105
Lsp1109I GCAGC 4 cut(s) 93, 602, 667, 787
MaeI CTAG 2 cut(s) 269, 1056
MaeII ACGT 6 cut(s) 69, 150, 222, 310, 390, 571
MaeIII GTNAC 5 cut(s) 223, 311, 567, 1005, 1048
MalI GATC 2 cut(s) 551, 963
MbiI CCGCTC 1 cut(s) 266
MboI GATC 2 cut(s) 549, 961
MboII GAAGA 4 cut(s) 97, 145, 529, 1064
MfeI CAATTG 1 cut(s) 56
MhlI GDGCHC 3 cut(s) 8, 1072, 1132
MluCI AATT 3 cut(s) 56, 327, 612
Mly113I GGCGCC 1 cut(s) 204
MlyI GAGTC 1 cut(s) 638
MmeI TCCRAC 3 cut(s) 55, 1243, 1253
MseI TTAA 2 cut(s) 606, 1251
MslI CAYNNNNRTG 4 cut(s) 339, 458, 621, 1245
MspA1I CMGCKG 1 cut(s) 658
MspI CCGG 2 cut(s) 465, 542
MspR9I CCNGG 1 cut(s) 1103
MunI CAATTG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 1103
MvnI CGCG 2 cut(s) 649, 1011
MwoI GCNNNNNNNGC 9 cut(s) 128, 215, 392, 655, 800, 908, 1067, 1118, 1127
NarI GGCGCC 1 cut(s) 204
NdeII GATC 2 cut(s) 549, 961
NlaIII CATG 6 cut(s) 89, 280, 364, 620, 788, 890
NlaIV GGNNCC 2 cut(s) 7, 205
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 223, 311
NsbI TGCGCA 1 cut(s) 711
NspI RCATGY 1 cut(s) 280
OliI CACNNNNGTG 1 cut(s) 1245
PceI AGGCCT 1 cut(s) 680
PciI ACATGT 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 1077
PcsI WCGNNNNNNNCGW 3 cut(s) 147, 207, 288
Pfl23II CGTACG 1 cut(s) 1017
PkrI GCNGC 6 cut(s) 83, 191, 208, 592, 657, 802
PleI GAGTC 1 cut(s) 638
PluTI GGCGCC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 638
Ppu21I YACGTR 1 cut(s) 572
PscI ACATGT 1 cut(s) 276
PsiI TTATAA 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 1132
Psp6I CCWGG 1 cut(s) 1101
PspGI CCWGG 1 cut(s) 1101
PspLI CGTACG 1 cut(s) 1017
PspN4I GGNNCC 2 cut(s) 7, 205
PspPI GGNCC 1 cut(s) 303
PvuII CAGCTG 1 cut(s) 658
RsaI GTAC 2 cut(s) 281, 1019
RsaNI GTAC 2 cut(s) 280, 1018
RseI CAYNNNNRTG 4 cut(s) 339, 458, 621, 1245
SacI GAGCTC 1 cut(s) 1132
SalI GTCGAC 2 cut(s) 272, 1177
SapI GCTCTTC 1 cut(s) 1077
SaqAI TTAA 2 cut(s) 606, 1251
SatI GCNGC 6 cut(s) 82, 190, 207, 591, 656, 801
Sau3AI GATC 2 cut(s) 549, 961
Sau96I GGNCC 1 cut(s) 303
SchI GAGTC 1 cut(s) 638
ScrFI CCNGG 1 cut(s) 1103
SduI GDGCHC 3 cut(s) 8, 1072, 1132
SfoI GGCGCC 1 cut(s) 205
SinI GGWCC 1 cut(s) 303
SmiMI CAYNNNNRTG 4 cut(s) 339, 458, 621, 1245
SmlI CTYRAG 2 cut(s) 167, 1142
SmoI CTYRAG 2 cut(s) 167, 1142
Sse9I AATT 3 cut(s) 56, 327, 612
SseBI AGGCCT 1 cut(s) 680
SsiI CCGC 8 cut(s) 187, 190, 207, 264, 306, 779, 866, 1112
SspDI GGCGCC 1 cut(s) 203
SspMI CTAG 2 cut(s) 269, 1056
SstI GAGCTC 1 cut(s) 1132
StuI AGGCCT 1 cut(s) 680
StyD4I CCNGG 1 cut(s) 1101
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 959, 1261
TaiI ACGT 6 cut(s) 72, 153, 225, 313, 393, 574
TaqI TCGA 6 cut(s) 141, 273, 321, 496, 702, 1178
TasI AATT 3 cut(s) 56, 327, 612
TauI GCSGC 2 cut(s) 192, 209
Tru1I TTAA 2 cut(s) 606, 1251
Tru9I TTAA 2 cut(s) 606, 1251
TscAI CASTG 4 cut(s) 777, 918, 964, 1047
TseFI GTSAC 2 cut(s) 223, 311
TseI GCWGC 4 cut(s) 81, 590, 655, 800
Tsp45I GTSAC 2 cut(s) 223, 311
TspDTI ATGAA 5 cut(s) 339, 605, 773, 921, 1224
TspGWI ACGGA 1 cut(s) 1110
TspRI CASTG 4 cut(s) 777, 918, 964, 1047
VpaK11BI GGWCC 1 cut(s) 303
XapI RAATTY 2 cut(s) 327, 612
XceI RCATGY 1 cut(s) 280
XmiI GTMKAC 3 cut(s) 273, 374, 1178
XspI CTAG 2 cut(s) 269, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.