Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013453

Physical Location & Seq

Genomic Coordinates Reverse (-)

62219349 .. 62221122

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0493200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCGATATGGATCGGACTTCAATCTCGCTGGCTTGGAAGTTAGGCTGCCGTCGTCAACCGGTGGTCAATGCAAGTTGCAACGCGAAACCCAGAAGCATCAGAGCTCGACCCACGCCATTAAGATCATCGACAAAGAGAAGATCCTCAAGGGCGGTTTGATCGTCCACATCAAACGCGAGATCTCCATCTTCCGCTGCGTTCGCCACCCCAATATCGTCCAGCTCTTCGAAGTAATCGCCACCAAGGCCAAGATCTACTTCGTCATGGAGTACGTCCGCGGCGGCGAGCCCTTCAACAAGGTCGCCAAGGGCCGGCTCAAAGAGGAGGTTGCTAGAAAGTACTTCCAACAATTAATCTCAGCCGTCGGATTCTGCCAAGCCCGAGGAGTCTACCACCGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

134

Amino Acids

15.35

Weight (kDa)

9.93

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 134	8.5e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	28 - 134	2.9e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03510
fragaria_vesca	FvH4_6g44770
malus_domestica	MD09G1093700.v1.1 MD17G1083400.v1.1
prunus_persica	Prupe.3G231700_v2.0.a1
pyrus_communis	pycom09g01890 pycom17g08120
rosa_chinensis	RchiOBHm_Chr2g0161921
rosa_laevigata	RLG00000021307
rosa_multiflora	Rmu_sc0008565.1_g000004 Rmu_sc0018381.1_g000006
rosa_roxburghii	Rroxscaffold_2G00088460
rosa_rugosa	Rorug02G0493200
rosa_samantha	Rh2AG559100 Rh2BG572500 Rh2CG542800 Rh2DG582300
rosa_wichuraiana	Rw2G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	3 cut(s)	84, 177, 279
AciI	CCGC	5 cut(s)	153, 193, 277, 279, 282
AclWI	GGATC	2 cut(s)	19, 136
AfaI	GTAC	2 cut(s)	272, 341
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgeI	ACCGGT	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	22, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	2 cut(s)	105, 223
AluI	AGCT	2 cut(s)	105, 223
Alw21I	GWGCWC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	19, 136
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	2 cut(s)	246, 310
ApeKI	GCWGC	2 cut(s)	46, 195
AseI	ATTAAT	1 cut(s)	353
AsiGI	ACCGGT	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	228
AvaI	CYCGRG	1 cut(s)	381
BanII	GRGCYC	2 cut(s)	107, 291
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	33, 182
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	2 cut(s)	34, 347
BfaI	CTAG	1 cut(s)	333
BglI	GCCNNNNNGGC	1 cut(s)	245
BglII	AGATCT	2 cut(s)	180, 252
BisI	GCNGC	4 cut(s)	47, 196, 280, 283
BlsI	GCNGC	4 cut(s)	48, 197, 281, 284
BmcAI	AGTACT	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	310
BmsI	GCATC	1 cut(s)	106
Bpu14I	TTCGAA	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	131
BsaBI	GATNNNNATC	2 cut(s)	10, 185
BsaJI	CCNNGG	4 cut(s)	243, 277, 306, 382
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	2 cut(s)	59, 312
Bse8I	GATNNNNATC	2 cut(s)	10, 185
BseDI	CCNNGG	4 cut(s)	243, 277, 306, 382
BseJI	GATNNNNATC	2 cut(s)	10, 185
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	372
BseRI	GAGGAG	2 cut(s)	338, 399
BseXI	GCAGC	2 cut(s)	33, 182
Bsh1236I	CGCG	3 cut(s)	84, 177, 279
BshFI	GGCC	2 cut(s)	248, 312
BshTI	ACCGGT	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	60, 313
BslI	CCNNNNNNNGG	1 cut(s)	312
BsnI	GGCC	2 cut(s)	248, 312
BsoBI	CYCGRG	1 cut(s)	381
Bsp119I	TTCGAA	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	107, 291
Bsp143I	GATC	6 cut(s)	11, 123, 141, 159, 180, 252
BspACI	CCGC	5 cut(s)	153, 193, 277, 279, 282
BspANI	GGCC	2 cut(s)	248, 312
BspCNI	CTCAG	1 cut(s)	371
BspFNI	CGCG	3 cut(s)	84, 177, 279
BspPI	GGATC	2 cut(s)	19, 136
BspQI	GCTCTTC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	228
BsrFI	RCCGGY	2 cut(s)	59, 312
BssAI	RCCGGY	2 cut(s)	59, 312
BssECI	CCNNGG	4 cut(s)	243, 277, 306, 382
BssMI	GATC	6 cut(s)	11, 123, 141, 159, 180, 252
BssT1I	CCWWGG	2 cut(s)	243, 306
Bst4CI	ACNGT	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	31, 287, 314
BstDEI	CTNAG	1 cut(s)	358
BstDSI	CCRYGG	1 cut(s)	277
BstFNI	CGCG	3 cut(s)	84, 177, 279
BstKTI	GATC	6 cut(s)	14, 126, 144, 162, 183, 255
BstMBI	GATC	6 cut(s)	11, 123, 141, 159, 180, 252
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 245
BstUI	CGCG	3 cut(s)	84, 177, 279
BstV1I	GCAGC	2 cut(s)	33, 182
BstX2I	RGATCY	3 cut(s)	141, 180, 252
BstYI	RGATCY	3 cut(s)	141, 180, 252
BsuRI	GGCC	2 cut(s)	248, 312
BtgI	CCRYGG	1 cut(s)	277
Cac8I	GCNNGC	3 cut(s)	31, 287, 314
Cfr10I	RCCGGY	2 cut(s)	59, 312
Cfr13I	GGNCC	1 cut(s)	310
Cfr42I	CCGCGG	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	271, 340
CspAI	ACCGGT	1 cut(s)	59
CviAII	CATG	1 cut(s)	265
CviQI	GTAC	2 cut(s)	271, 340
DdeI	CTNAG	1 cut(s)	358
DpnI	GATC	6 cut(s)	13, 125, 143, 161, 182, 254
DpnII	GATC	6 cut(s)	11, 123, 141, 159, 180, 252
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Ecl136II	GAGCTC	1 cut(s)	105
Eco130I	CCWWGG	2 cut(s)	243, 306
Eco24I	GRGCYC	2 cut(s)	107, 291
Eco53kI	GAGCTC	1 cut(s)	105
Eco88I	CYCGRG	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	105
EcoT14I	CCWWGG	2 cut(s)	243, 306
EcoT38I	GRGCYC	2 cut(s)	107, 291
ErhI	CCWWGG	2 cut(s)	243, 306
FaeI	CATG	1 cut(s)	268
FaiI	YATR	2 cut(s)	9, 266
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	4 cut(s)	47, 196, 280, 283
FriOI	GRGCYC	2 cut(s)	107, 291
Fsp4HI	GCNGC	4 cut(s)	47, 196, 280, 283
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	4 cut(s)	47, 196, 280, 283
HaeIII	GGCC	2 cut(s)	248, 312
HapII	CCGG	2 cut(s)	60, 313
Hin1II	CATG	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	369, 387
HpaII	CCGG	2 cut(s)	60, 313
Hpy166II	GTNNAC	3 cut(s)	57, 166, 391
Hpy188I	TCNGA	3 cut(s)	16, 102, 368
Hpy8I	GTNNAC	3 cut(s)	57, 166, 391
Hpy99I	CGWCG	2 cut(s)	55, 368
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	72, 79
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 245
HpyF3I	CTNAG	1 cut(s)	358
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	268
KroI	GCCGGC	1 cut(s)	312
KroNI	GCCGGC	1 cut(s)	314
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	6 cut(s)	11, 123, 141, 159, 180, 252
LguI	GCTCTTC	1 cut(s)	230
LpnPI	CCDG	5 cut(s)	15, 73, 104, 233, 326
Lsp1109I	GCAGC	2 cut(s)	33, 182
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	6 cut(s)	13, 125, 143, 161, 182, 254
MboI	GATC	6 cut(s)	11, 123, 141, 159, 180, 252
MboII	GAAGA	3 cut(s)	151, 181, 217
MflI	RGATCY	3 cut(s)	141, 180, 252
MhlI	GDGCHC	2 cut(s)	107, 291
MluCI	AATT	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	396
MmeI	TCCRAC	2 cut(s)	346, 370
MnlI	CCTC	4 cut(s)	155, 316, 319, 377
MroNI	GCCGGC	1 cut(s)	312
MseI	TTAA	2 cut(s)	120, 353
MspA1I	CMGCKG	2 cut(s)	195, 279
MspI	CCGG	2 cut(s)	60, 313
MvnI	CGCG	3 cut(s)	84, 177, 279
MwoI	GCNNNNNNNGC	2 cut(s)	201, 245
NaeI	GCCGGC	1 cut(s)	314
NdeII	GATC	6 cut(s)	11, 123, 141, 159, 180, 252
NgoMIV	GCCGGC	1 cut(s)	312
NlaIII	CATG	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	398
NspV	TTCGAA	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	230
PdiI	GCCGGC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	369
PinAI	ACCGGT	1 cut(s)	59
PkrI	GCNGC	4 cut(s)	48, 197, 281, 284
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PshBI	ATTAAT	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	310
PsuI	RGATCY	3 cut(s)	141, 180, 252
RsaI	GTAC	2 cut(s)	272, 341
RsaNI	GTAC	2 cut(s)	271, 340
SacI	GAGCTC	1 cut(s)	107
SacII	CCGCGG	1 cut(s)	280
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	120, 353
SatI	GCNGC	4 cut(s)	47, 196, 280, 283
Sau3AI	GATC	6 cut(s)	11, 123, 141, 159, 180, 252
Sau96I	GGNCC	1 cut(s)	310
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	1 cut(s)	396
SduI	GDGCHC	2 cut(s)	107, 291
SetI	ASST	5 cut(s)	107, 225, 276, 303, 330
SfaNI	GCATC	1 cut(s)	106
Sfr303I	CCGCGG	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	228
SgrBI	CCGCGG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	350
SsiI	CCGC	5 cut(s)	153, 193, 277, 279, 282
SspMI	CTAG	1 cut(s)	333
SstI	GAGCTC	1 cut(s)	107
StyI	CCWWGG	2 cut(s)	243, 306
TaaI	ACNGT	1 cut(s)	398
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	3 cut(s)	107, 129, 228
TasI	AATT	1 cut(s)	350
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	2 cut(s)	282, 285
TfiI	GAWTC	1 cut(s)	369
Tru1I	TTAA	2 cut(s)	120, 353
Tru9I	TTAA	2 cut(s)	120, 353
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	2 cut(s)	46, 195
Tsp45I	GTSAC	1 cut(s)	398
VspI	ATTAAT	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	1 cut(s)	333
ZrmI	AGTACT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.