Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013453

Physical Location & Seq

Genomic Coordinates Reverse (-)

22872888 .. 22874180

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G231700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGGCTCCTACCAGCCATCAAACTTCCAGCGCTTGCTTTCTCTCACCAAGCTCTTGACTTCTGACGTCAACCAAGGCCGTCATGACAAAGCCCTTGCTCTTTTCCACCACATGCAGGCCTCACTGGCCCTCCCTCTCGACGCCCATGTCTTCTCTCTTGTCCTCAAGTCTTGCTCTGCCATCCACCGCCCGCAACTCGGCATCTCCATCCATGCCCATGTTGCCAAGTCGTCAATCCTTCCAAACCCATTTGTGGCTTCCGCTCTCGTTGACATGTACGGCAAATGCGTGTCACTCTCAGCAGCACGTAACTTGTTCGACGAAATTCCTCAGAGGAACGTTGTTGTGTGGAATGCTATGATATCGGTGTATACGCGTAATGGGAATGTGTCTGATGCGTTGGGATTGTTTGAGGCTATGGATGTTGAACCAGACGTGTCAACATTCAATTCCATTATAGCCGGGTTGGCGGGATCCGATGATGGGTCGTTCAAGGCCGTCGAGTTCTATAGAAAAATGAGAGCTTGGGGATGGAAACCGGATTTAATAACACTGCTTGCTCTGTTACGTGCTTGCGTTGGTGTAGCAGCTTTAAGGTTTATTAGGGAAATTCATGGCTATGATGTAAGGAATGAAATTGACTTTCATTCCCAAGTGAGTAGCCTCCTGGTGGAGGCCTACGGGCGCTGTGGTTGTCTTGCTAATGCGCACAATCTGTTCCACTGCATGAAGAAAAAGGATGTAGTTGCATGGAGTAGTTTGATATCTGCGTACGCACTTCACGGGGAGGCAAGAGCTGCATTGGACGTTTTCCGGAAGATGGAATTGGCAAAAGTAGAGCCTGATGAGATCACTTTCCTTGCGGTACTGAAAGCGTGTAGCCATGCTGAAGGATTAGCCGATGAAGCACTACATTATTTTAGTCGGATGCGTAAGGATTATGGTGTGCAAGCGAACAGCGATCACTATTCTTGTATAGTAGATGTTTTGAGCAGAACAGGGAGGTTGAATGAGGCATATGAGGTCATAAGGCAAATGCCAGTGAAGGTGACTGCTAAAGCTTGGGGTGCTCTTCTTTCGGCATGTAGAACTTATGGAAACATGGAGCTTGCTGAGATTGCAGGGAAAGCTCTGTCCGAAATCGAGCCTGGTAATCCTGCCAATTATTTATTGTTGGCAAGGATGTATTCTAGCTTAGGAAGGCATGAGGAGGCTCAGAGAATGAGAAGGGAAATGAAGGAGAAGGGGGTGAAGGCACCTTCTGGCACTAGTTGGGTGGTTTATCAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

431

Amino Acids

47.62

Weight (kDa)

8.28

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03510
fragaria_vesca	FvH4_6g44770
malus_domestica	MD09G1093700.v1.1 MD17G1083400.v1.1
prunus_persica	Prupe.3G231700_v2.0.a1
pyrus_communis	pycom09g01890 pycom17g08120
rosa_chinensis	RchiOBHm_Chr2g0161921
rosa_laevigata	RLG00000021307
rosa_multiflora	Rmu_sc0008565.1_g000004 Rmu_sc0018381.1_g000006
rosa_roxburghii	Rroxscaffold_2G00088460
rosa_rugosa	Rorug02G0493200
rosa_samantha	Rh2AG559100 Rh2BG572500 Rh2CG542800 Rh2DG582300
rosa_wichuraiana	Rw2G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AatII	GACGTC	1 cut(s)	69
Acc16I	TGCGCA	1 cut(s)	708
AccB1I	GGYRCC	1 cut(s)	1255
AccBSI	CCGCTC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	371
AccII	CGCG	1 cut(s)	376
AccIII	TCCGGA	1 cut(s)	813
AciI	CCGC	5 cut(s)	187, 191, 261, 470, 863
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	2 cut(s)	468, 481
AcsI	RAATTY	2 cut(s)	324, 609
AcuI	CTGAAG	1 cut(s)	909
AcyI	GRCGYC	2 cut(s)	66, 141
AfaI	GTAC	3 cut(s)	278, 773, 867
AfeI	AGCGCT	1 cut(s)	32
AfiI	CCNNNNNNNGG	7 cut(s)	115, 197, 253, 483, 670, 673, 820
AflIII	ACRYGT	3 cut(s)	273, 374, 435
AgsI	TTSAA	4 cut(s)	428, 448, 493, 1009
AhlI	ACTAGT	1 cut(s)	1268
AjiI	CACGTC	1 cut(s)	436
AjnI	CCWGG	2 cut(s)	666, 1147
AjuI	GAANNNNNNNTTGG	2 cut(s)	809, 841
AluBI	AGCT	8 cut(s)	52, 524, 590, 797, 1061, 1108, 1130, 1194
AluI	AGCT	8 cut(s)	52, 524, 590, 797, 1061, 1108, 1130, 1194
Alw21I	GWGCWC	1 cut(s)	1072
AlwI	GGATC	2 cut(s)	468, 481
Aor13HI	TCCGGA	1 cut(s)	813
Aor51HI	AGCGCT	1 cut(s)	32
AoxI	GGCC	5 cut(s)	76, 117, 126, 495, 675
ApeKI	GCWGC	3 cut(s)	302, 587, 797
ApoI	RAATTY	2 cut(s)	324, 609
AspLEI	GCGC	3 cut(s)	33, 687, 709
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	3 cut(s)	37, 1060, 1261
BamHI	GGATCC	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	1255
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	1072
BbvI	GCAGC	3 cut(s)	314, 599, 784
BccI	CCATC	6 cut(s)	25, 188, 215, 476, 525, 814
BceAI	ACGGC	3 cut(s)	63, 295, 482
BciT130I	CCWGG	2 cut(s)	668, 1149
BcnI	CCSGG	1 cut(s)	463
BcuI	ACTAGT	1 cut(s)	1268
BfaI	CTAG	2 cut(s)	1191, 1269
BfmI	CTRYAG	1 cut(s)	508
BfoI	RGCGCY	2 cut(s)	34, 688
BglI	GCCNNNNNGGC	2 cut(s)	125, 467
BisI	GCNGC	3 cut(s)	303, 588, 798
BlsI	GCNGC	3 cut(s)	304, 589, 799
Bme1390I	CCNGG	3 cut(s)	463, 668, 1149
BmgBI	CACGTC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	3 cut(s)	7, 475, 1257
BmrFI	CCNGG	3 cut(s)	463, 668, 1149
BmsI	GCATC	3 cut(s)	210, 385, 918
BpiI	GAAGAC	1 cut(s)	142
Bpu10I	CCTNAGC	1 cut(s)	1195
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	463
BsaAI	YACGTR	2 cut(s)	308, 569
BsaHI	GRCGYC	2 cut(s)	66, 141
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	2 cut(s)	538, 813
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bsc4I	CCNNNNNNNGG	7 cut(s)	115, 197, 253, 483, 670, 673, 820
Bse1I	ACTGG	2 cut(s)	129, 1040
BseAI	TCCGGA	1 cut(s)	813
BseBI	CCWGG	2 cut(s)	668, 1149
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	7 cut(s)	180, 207, 427, 536, 745, 933, 1188
BseLI	CCNNNNNNNGG	7 cut(s)	115, 197, 253, 483, 670, 673, 820
BseMII	CTCAG	4 cut(s)	312, 344, 1104, 1229
BseNI	ACTGG	2 cut(s)	129, 1040
BseRI	GAGGAG	1 cut(s)	1223
BseXI	GCAGC	3 cut(s)	314, 599, 784
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	5 cut(s)	78, 119, 128, 497, 677
BshNI	GGYRCC	1 cut(s)	1255
BsiHKAI	GWGCWC	1 cut(s)	1072
BsiSI	CCGG	3 cut(s)	462, 539, 814
BsiWI	CGTACG	1 cut(s)	771
BslI	CCNNNNNNNGG	7 cut(s)	115, 197, 253, 483, 670, 673, 820
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	5 cut(s)	78, 119, 128, 497, 677
Bsp1286I	GDGCHC	2 cut(s)	8, 1072
Bsp13I	TCCGGA	1 cut(s)	813
Bsp143I	GATC	3 cut(s)	473, 849, 961
BspACI	CCGC	5 cut(s)	187, 191, 261, 470, 863
BspANI	GGCC	5 cut(s)	78, 119, 128, 497, 677
BspCNI	CTCAG	4 cut(s)	311, 343, 1105, 1228
BspEI	TCCGGA	1 cut(s)	813
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	3 cut(s)	7, 475, 1257
BspPI	GGATC	2 cut(s)	468, 481
BspQI	GCTCTTC	1 cut(s)	1077
BspT107I	GGYRCC	1 cut(s)	1255
BsrBI	CCGCTC	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	129, 1040
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	3 cut(s)	473, 849, 961
BssNAI	GTATAC	1 cut(s)	372
BssNI	GRCGYC	2 cut(s)	66, 141
BssT1I	CCWWGG	1 cut(s)	73
Bst1107I	GTATAC	1 cut(s)	372
Bst2UI	CCWGG	2 cut(s)	668, 1149
Bst6I	CTCTTC	1 cut(s)	1077
BstACI	GRCGYC	2 cut(s)	66, 141
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstBAI	YACGTR	2 cut(s)	308, 569
BstC8I	GCNNGC	7 cut(s)	35, 117, 191, 558, 574, 951, 1110
BstDEI	CTNAG	5 cut(s)	298, 330, 1113, 1195, 1215
BstENI	CCTNNNNNAGG	1 cut(s)	671
BstF5I	GGATG	7 cut(s)	180, 207, 427, 536, 745, 933, 1188
BstFNI	CGCG	1 cut(s)	376
BstH2I	RGCGCY	2 cut(s)	34, 688
BstHHI	GCGC	3 cut(s)	33, 687, 709
BstKTI	GATC	3 cut(s)	476, 852, 964
BstMBI	GATC	3 cut(s)	473, 849, 961
BstMWI	GCNNNNNNNGC	8 cut(s)	125, 221, 467, 797, 905, 1067, 1118, 1127
BstNI	CCWGG	2 cut(s)	668, 1149
BstNSI	RCATGY	3 cut(s)	115, 277, 1086
BstSCI	CCNGG	3 cut(s)	461, 666, 1147
BstSFI	CTRYAG	1 cut(s)	508
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	3 cut(s)	314, 599, 784
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
BstZ17I	GTATAC	1 cut(s)	372
BsuRI	GGCC	5 cut(s)	78, 119, 128, 497, 677
BtrI	CACGTC	1 cut(s)	436
BtsCI	GGATG	7 cut(s)	180, 207, 427, 536, 745, 933, 1188
BtsI	GCAGTG	2 cut(s)	551, 721
BtsIMutI	CAGTG	4 cut(s)	122, 551, 721, 1047
Cac8I	GCNNGC	7 cut(s)	35, 117, 191, 558, 574, 951, 1110
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	3 cut(s)	33, 687, 709
Cfr13I	GGNCC	1 cut(s)	127
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	3 cut(s)	277, 772, 866
CviQI	GTAC	3 cut(s)	277, 772, 866
DdeI	CTNAG	5 cut(s)	298, 330, 1113, 1195, 1215
DpnI	GATC	3 cut(s)	475, 851, 963
DpnII	GATC	3 cut(s)	473, 849, 961
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	1077
EarI	CTCTTC	1 cut(s)	1077
Eco130I	CCWWGG	1 cut(s)	73
Eco147I	AGGCCT	2 cut(s)	119, 677
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	2 cut(s)	363, 765
Eco47III	AGCGCT	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	909
EcoNI	CCTNNNNNAGG	1 cut(s)	671
EcoRII	CCWGG	2 cut(s)	666, 1147
EcoRV	GATATC	2 cut(s)	363, 765
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	73
FauI	CCCGC	2 cut(s)	198, 463
FauNDI	CATATG	1 cut(s)	1018
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	3 cut(s)	303, 588, 798
FokI	GGATG	7 cut(s)	167, 194, 434, 543, 752, 940, 1195
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	303, 588, 798
FspAI	RTGCGCAY	1 cut(s)	708
FspBI	CTAG	2 cut(s)	1191, 1269
FspI	TGCGCA	1 cut(s)	708
GlaI	GCGC	3 cut(s)	32, 686, 708
GluI	GCNGC	3 cut(s)	303, 588, 798
HaeII	RGCGCY	2 cut(s)	34, 688
HaeIII	GGCC	5 cut(s)	78, 119, 128, 497, 677
HapII	CCGG	3 cut(s)	462, 539, 814
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	3 cut(s)	33, 687, 709
Hin1I	GRCGYC	2 cut(s)	66, 141
Hin6I	GCGC	3 cut(s)	31, 685, 707
HinP1I	GCGC	3 cut(s)	31, 685, 707
HincII	GTYRAC	3 cut(s)	70, 271, 441
HindII	GTYRAC	3 cut(s)	70, 271, 441
HindIII	AAGCTT	1 cut(s)	1059
HpaII	CCGG	3 cut(s)	462, 539, 814
HphI	GGTGA	3 cut(s)	37, 1060, 1261
Hpy166II	GTNNAC	4 cut(s)	70, 271, 372, 441
Hpy188I	TCNGA	7 cut(s)	64, 333, 394, 478, 927, 1138, 1218
Hpy188III	TCNNGA	5 cut(s)	55, 83, 137, 814, 1286
Hpy8I	GTNNAC	4 cut(s)	70, 271, 372, 441
Hpy99I	CGWCG	3 cut(s)	143, 323, 503
HpyAV	CCTTC	9 cut(s)	248, 884, 1039, 1194, 1221, 1231, 1237, 1246, 1269
HpyCH4IV	ACGT	6 cut(s)	66, 307, 339, 435, 568, 807
HpyCH4V	TGCA	6 cut(s)	115, 726, 749, 800, 949, 1121
HpyF10VI	GCNNNNNNNGC	8 cut(s)	125, 221, 467, 797, 905, 1067, 1118, 1127
HpyF3I	CTNAG	5 cut(s)	298, 330, 1113, 1195, 1215
HpySE526I	ACGT	6 cut(s)	66, 307, 339, 435, 568, 807
Hsp92I	GRCGYC	2 cut(s)	66, 141
HspAI	GCGC	3 cut(s)	31, 685, 707
Kpn2I	TCCGGA	1 cut(s)	813
Kzo9I	GATC	3 cut(s)	473, 849, 961
LguI	GCTCTTC	1 cut(s)	1077
LmnI	GCTCC	2 cut(s)	11, 1105
Lsp1109I	GCAGC	3 cut(s)	314, 599, 784
LweI	GCATC	3 cut(s)	210, 385, 918
MaeI	CTAG	2 cut(s)	1191, 1269
MaeII	ACGT	6 cut(s)	66, 307, 339, 435, 568, 807
MaeIII	GTNAC	4 cut(s)	291, 308, 564, 1048
MalI	GATC	3 cut(s)	475, 851, 963
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	3 cut(s)	473, 849, 961
MboII	GAAGA	4 cut(s)	142, 742, 829, 1064
MflI	RGATCY	1 cut(s)	473
MhlI	GDGCHC	2 cut(s)	8, 1072
MluCI	AATT	6 cut(s)	324, 448, 609, 636, 824, 1162
MluI	ACGCGT	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	905
MroI	TCCGGA	1 cut(s)	813
MseI	TTAA	2 cut(s)	545, 593
MslI	CAYNNNNRTG	2 cut(s)	216, 618
MspI	CCGG	3 cut(s)	462, 539, 814
MspR9I	CCNGG	3 cut(s)	463, 668, 1149
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	2 cut(s)	668, 1149
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	8 cut(s)	125, 221, 467, 797, 905, 1067, 1118, 1127
NciI	CCSGG	1 cut(s)	463
NdeI	CATATG	1 cut(s)	1018
NdeII	GATC	3 cut(s)	473, 849, 961
NlaIV	GGNNCC	3 cut(s)	7, 475, 1257
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	291, 1048
NsbI	TGCGCA	1 cut(s)	708
NspI	RCATGY	3 cut(s)	115, 277, 1086
PagI	TCATGA	1 cut(s)	82
PceI	AGGCCT	2 cut(s)	119, 677
PciI	ACATGT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	1077
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	1 cut(s)	358
Pfl23II	CGTACG	1 cut(s)	771
PkrI	GCNGC	3 cut(s)	304, 589, 799
Ppu21I	YACGTR	2 cut(s)	308, 569
PscI	ACATGT	1 cut(s)	273
Psp1406I	AACGTT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	666, 1147
PspGI	CCWGG	2 cut(s)	666, 1147
PspLI	CGTACG	1 cut(s)	771
PspN4I	GGNNCC	3 cut(s)	7, 475, 1257
PspPI	GGNCC	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	473
RsaI	GTAC	3 cut(s)	278, 773, 867
RsaNI	GTAC	3 cut(s)	277, 772, 866
RseI	CAYNNNNRTG	2 cut(s)	216, 618
SapI	GCTCTTC	1 cut(s)	1077
SaqAI	TTAA	2 cut(s)	545, 593
SatI	GCNGC	3 cut(s)	303, 588, 798
Sau3AI	GATC	3 cut(s)	473, 849, 961
Sau96I	GGNCC	1 cut(s)	127
ScrFI	CCNGG	3 cut(s)	463, 668, 1149
SduI	GDGCHC	2 cut(s)	8, 1072
SfaNI	GCATC	3 cut(s)	210, 385, 918
SfcI	CTRYAG	1 cut(s)	508
SfiI	GGCCNNNNNGGCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	2 cut(s)	216, 618
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SpeI	ACTAGT	1 cut(s)	1268
Sse9I	AATT	6 cut(s)	324, 448, 609, 636, 824, 1162
SseBI	AGGCCT	2 cut(s)	119, 677
SsiI	CCGC	5 cut(s)	187, 191, 261, 470, 863
SspMI	CTAG	2 cut(s)	1191, 1269
StuI	AGGCCT	2 cut(s)	119, 677
StyD4I	CCNGG	3 cut(s)	461, 666, 1147
StyI	CCWWGG	1 cut(s)	73
TaiI	ACGT	6 cut(s)	69, 310, 342, 438, 571, 810
TaqI	TCGA	4 cut(s)	138, 318, 501, 1143
TasI	AATT	6 cut(s)	324, 448, 609, 636, 824, 1162
Tru1I	TTAA	2 cut(s)	545, 593
Tru9I	TTAA	2 cut(s)	545, 593
TscAI	CASTG	4 cut(s)	129, 558, 728, 1047
TseFI	GTSAC	2 cut(s)	291, 1048
TseI	GCWGC	3 cut(s)	302, 587, 797
Tsp45I	GTSAC	2 cut(s)	291, 1048
TspDTI	ATGAA	6 cut(s)	602, 635, 648, 743, 918, 1250
TspRI	CASTG	4 cut(s)	129, 558, 728, 1047
XagI	CCTNNNNNAGG	1 cut(s)	671
XapI	RAATTY	2 cut(s)	324, 609
XceI	RCATGY	3 cut(s)	115, 277, 1086
XmiI	GTMKAC	1 cut(s)	371
XspI	CTAG	2 cut(s)	1191, 1269
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.