Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013453

Physical Location & Seq

Genomic Coordinates Forward (+)

1409900 .. 1411192

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGGGTCCTACAACCATTCAAACTTCCAACGGTTGCTTTCTTTCACCAAGCTCTTAACCTCCCACGTTAGCCAAGGCCGTCATGACAAAGCCCTTTCCCTCTTCCACCACATGCAGACCTCACTGGCTCTATCTCTCGACCCCCATGTTTTCTCTCTTGTTCTCAAGTCCTGCTCCGCCGTCCACCGCCCGCAACTCGGCGTCTCCGTCCATGCCCATGTCACCAAATCTTCCATCCTATCAAACCCATTTGTGGCTTCCGCTCTCGTCGACATGTATGGCAAGTGCGTGTCATTGTCGACCGCACGCAACCTGTTTGATGAAATTCCTCAGAGGAACGTTGTTGTGTGGAATGCTATGGTATCGCTTTATACGCGTACCGGTAATGTGTTTGATGCTTTGAGATTGTTTGAGGCAATGGATGTTGAACCTGATGTGTCAACTTTTAATACCATTATATCTGGGATGTCGGGATTGGATGATGGGTCGTTTAAGGCTGTCGAGTTCTATAGGAAAATGACAGCGCGTGGATGGAAACCAGATTTAATAACATTGCTTGCTTTGTTACGTGCTTTTGTTGGTGTAGCGGCTTTAAGGTTTATTAAGGAAATTCATGGCTATGATGTGAGAAATGAGATTGACTCGCATTCCCAATTGAGTAGTGGCCTAGTTGAGGCCTATGGGCGTTGTGGTTATCTCGCAAATGCGCGTAATCTGTTCCGCTATATGAAGAAAAAGGATATGGTTGCATGGAGTAGTCTAATATCTGCGTATGCACTTCATGGGGAGGCAAGAGCTGCATTGGAAATTTTCCAAGAGATGGAATTGGCGAAAGTAGAGCCTGATGAGATTACTTTTCTTGCAGTGCTGAAGGCTTGCAGCCATGCTGAAGGATTAGCAGATGAAGCACTGCATTATTTTGGTCGGATGCGTGAGGATTATGGTGTGCAAGCAAATAGTGATCACTATTCTTGTTTAGTAGATGTTCTGAGCAGAGCAGGGAGGTTGCATGAGGCATATGAGGTCATAAGGAAAATGCCAGTGAAGGTTACCGTTAAAGCTTGGGGTGCTCTTCTTTCAGCATGTAGAACTTACGGAGAATTGGAGCTTGCTGAGATTGCAGGGAAAGCTCTGTCCGAAATTGAGCCTGATAATCCTGCCAATTATTTACTATTGGCACGAATATATTCTGGCTTAGGAAGGCACGAGGAAGCACAACGAATGAGAAGGGAAATGAAAGAGAAGGGAGTGAAGGCATCATCTGGAACTAGTTGGGTGGTTTATCAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

431

Amino Acids

47.99

Weight (kDa)

7.71

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	112 - 156	7.6e-09	PPR repeat family
PPR_2	PF13041	144 - 192	1.5e-06	PPR repeat family
PPR_2	PF13041	247 - 294	3e-09	PPR repeat family
PPR_3	PF13812	247 - 293	3.2e-07	Pentatricopeptide repeat domain
PPR	PF01535	249 - 275	7.1e-06	PPR repeat
PPR_long	PF17177	262 - 367	5.6e-07	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	365 - 426	2.7e-16	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03510
fragaria_vesca	FvH4_6g44770
malus_domestica	MD09G1093700.v1.1 MD17G1083400.v1.1
prunus_persica	Prupe.3G231700_v2.0.a1
pyrus_communis	pycom09g01890 pycom17g08120
rosa_chinensis	RchiOBHm_Chr2g0161921
rosa_laevigata	RLG00000021307
rosa_multiflora	Rmu_sc0008565.1_g000004 Rmu_sc0018381.1_g000006
rosa_roxburghii	Rroxscaffold_2G00088460
rosa_rugosa	Rorug02G0493200
rosa_samantha	Rh2AG559100 Rh2BG572500 Rh2CG542800 Rh2DG582300
rosa_wichuraiana	Rw2G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	820
AccBSI	CCGCTC	1 cut(s)	263
AccI	GTMKAC	2 cut(s)	270, 299
AccII	CGCG	3 cut(s)	376, 526, 709
AciI	CCGC	7 cut(s)	177, 187, 191, 261, 303, 587, 721
AclI	AACGTT	1 cut(s)	339
AcsI	RAATTY	3 cut(s)	324, 609, 807
AcuI	CTGAAG	2 cut(s)	890, 909
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	4 cut(s)	197, 253, 673, 820
AflIII	ACRYGT	2 cut(s)	273, 374
AgeI	ACCGGT	1 cut(s)	380
AgsI	TTSAA	2 cut(s)	21, 428
AhlI	ACTAGT	1 cut(s)	1268
AluBI	AGCT	5 cut(s)	52, 797, 1061, 1108, 1130
AluI	AGCT	5 cut(s)	52, 797, 1061, 1108, 1130
Alw21I	GWGCWC	1 cut(s)	1072
Alw26I	GTCTC	1 cut(s)	208
AoxI	GGCC	3 cut(s)	76, 664, 675
ApeKI	GCWGC	2 cut(s)	797, 879
ApoI	RAATTY	3 cut(s)	324, 609, 807
AsiGI	ACCGGT	1 cut(s)	380
Asp700I	GAANNNNTTC	1 cut(s)	1186
AspLEI	GCGC	2 cut(s)	526, 709
AspS9I	GGNCC	1 cut(s)	6
AsuHPI	GGTGA	2 cut(s)	37, 214
AvaII	GGWCC	1 cut(s)	6
BauI	CACGAG	1 cut(s)	1205
Bbv12I	GWGCWC	1 cut(s)	1072
BbvI	GCAGC	2 cut(s)	784, 891
BccI	CCATC	4 cut(s)	242, 476, 525, 814
BceAI	ACGGC	2 cut(s)	63, 164
BclI	TGATCA	1 cut(s)	961
BcoDI	GTCTC	1 cut(s)	208
BcuI	ACTAGT	1 cut(s)	1268
BfaI	CTAG	2 cut(s)	668, 1269
BfmI	CTRYAG	1 cut(s)	508
BisI	GCNGC	3 cut(s)	588, 798, 880
BlsI	GCNGC	3 cut(s)	589, 799, 881
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	3 cut(s)	385, 918, 1265
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
Bpu10I	CCTNAGC	1 cut(s)	1195
BpuEI	CTTGAG	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	569
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	4 cut(s)	197, 253, 673, 820
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	129, 1040
Bse3DI	GCAATG	2 cut(s)	423, 551
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	6 cut(s)	234, 427, 471, 484, 536, 933
BseLI	CCNNNNNNNGG	4 cut(s)	197, 253, 673, 820
BseMI	GCAATG	2 cut(s)	423, 551
BseMII	CTCAG	3 cut(s)	344, 980, 1104
BseNI	ACTGG	2 cut(s)	129, 1040
BseXI	GCAGC	2 cut(s)	784, 891
Bsh1236I	CGCG	3 cut(s)	376, 526, 709
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	3 cut(s)	78, 666, 677
BshTI	ACCGGT	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	1072
BsiSI	CCGG	1 cut(s)	381
BslI	CCNNNNNNNGG	4 cut(s)	197, 253, 673, 820
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsmI	GAATGC	2 cut(s)	358, 646
BsnI	GGCC	3 cut(s)	78, 666, 677
Bsp1286I	GDGCHC	1 cut(s)	1072
Bsp143I	GATC	1 cut(s)	961
BspACI	CCGC	7 cut(s)	177, 187, 191, 261, 303, 587, 721
BspANI	GGCC	3 cut(s)	78, 666, 677
BspCNI	CTCAG	3 cut(s)	343, 981, 1105
BspFNI	CGCG	3 cut(s)	376, 526, 709
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	7
BspQI	GCTCTTC	1 cut(s)	1077
BsrBI	CCGCTC	1 cut(s)	263
BsrDI	GCAATG	2 cut(s)	423, 551
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	2 cut(s)	129, 1040
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	961
BssNI	GRCGYC	1 cut(s)	201
BssSI	CACGAG	1 cut(s)	1205
BssT1I	CCWWGG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	1205
Bst4CI	ACNGT	2 cut(s)	33, 1054
Bst6I	CTCTTC	2 cut(s)	107, 1077
BstACI	GRCGYC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstBAI	YACGTR	1 cut(s)	569
BstC8I	GCNNGC	6 cut(s)	191, 307, 558, 877, 951, 1110
BstDEI	CTNAG	4 cut(s)	330, 989, 1113, 1195
BstEII	GGTNACC	1 cut(s)	1048
BstENI	CCTNNNNNAGG	1 cut(s)	671
BstF5I	GGATG	6 cut(s)	234, 427, 471, 484, 536, 933
BstFNI	CGCG	3 cut(s)	376, 526, 709
BstHHI	GCGC	2 cut(s)	526, 709
BstKTI	GATC	1 cut(s)	964
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	961
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	6 cut(s)	373, 797, 905, 1067, 1118, 1127
BstNSI	RCATGY	3 cut(s)	115, 277, 1086
BstPI	GGTNACC	1 cut(s)	1048
BstSFI	CTRYAG	1 cut(s)	508
BstUI	CGCG	3 cut(s)	376, 526, 709
BstV1I	GCAGC	2 cut(s)	784, 891
BsuRI	GGCC	3 cut(s)	78, 666, 677
BtsCI	GGATG	6 cut(s)	234, 427, 471, 484, 536, 933
BtsI	GCAGTG	2 cut(s)	870, 908
BtsIMutI	CAGTG	4 cut(s)	122, 870, 908, 1047
Cac8I	GCNNGC	6 cut(s)	191, 307, 558, 877, 951, 1110
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	2 cut(s)	526, 709
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	378
CspAI	ACCGGT	1 cut(s)	380
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	4 cut(s)	330, 989, 1113, 1195
DpnI	GATC	1 cut(s)	963
DpnII	GATC	1 cut(s)	961
Eam1104I	CTCTTC	2 cut(s)	107, 1077
EarI	CTCTTC	2 cut(s)	107, 1077
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	73
Eco147I	AGGCCT	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	890, 909
Eco91I	GGTNACC	1 cut(s)	1048
EcoNI	CCTNNNNNAGG	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	6
EcoO65I	GGTNACC	1 cut(s)	1048
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	208
FauI	CCCGC	1 cut(s)	198
FauNDI	CATATG	1 cut(s)	1018
FbaI	TGATCA	1 cut(s)	961
FblI	GTMKAC	2 cut(s)	270, 299
Fnu4HI	GCNGC	3 cut(s)	588, 798, 880
FokI	GGATG	6 cut(s)	221, 434, 478, 491, 543, 940
Fsp4HI	GCNGC	3 cut(s)	588, 798, 880
FspBI	CTAG	2 cut(s)	668, 1269
GlaI	GCGC	2 cut(s)	525, 708
GluI	GCNGC	3 cut(s)	588, 798, 880
HaeIII	GGCC	3 cut(s)	78, 666, 677
HapII	CCGG	1 cut(s)	381
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	2 cut(s)	526, 709
Hin1I	GRCGYC	1 cut(s)	201
Hin6I	GCGC	2 cut(s)	524, 707
HinP1I	GCGC	2 cut(s)	524, 707
HincII	GTYRAC	3 cut(s)	271, 300, 441
HindII	GTYRAC	3 cut(s)	271, 300, 441
HindIII	AAGCTT	1 cut(s)	1059
HinfI	GANTC	1 cut(s)	641
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	2 cut(s)	37, 214
Hpy166II	GTNNAC	4 cut(s)	184, 271, 300, 441
Hpy188I	TCNGA	4 cut(s)	333, 927, 990, 1138
Hpy188III	TCNNGA	5 cut(s)	83, 137, 471, 1263, 1286
Hpy8I	GTNNAC	4 cut(s)	184, 271, 300, 441
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	7 cut(s)	865, 884, 1039, 1194, 1221, 1237, 1246
HpyCH4III	ACNGT	2 cut(s)	33, 1054
HpyCH4IV	ACGT	3 cut(s)	66, 339, 568
HpyF10VI	GCNNNNNNNGC	6 cut(s)	373, 797, 905, 1067, 1118, 1127
HpyF3I	CTNAG	4 cut(s)	330, 989, 1113, 1195
HpySE526I	ACGT	3 cut(s)	66, 339, 568
Hsp92I	GRCGYC	1 cut(s)	201
HspAI	GCGC	2 cut(s)	524, 707
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	1 cut(s)	961
LguI	GCTCTTC	1 cut(s)	1077
LmnI	GCTCC	2 cut(s)	179, 1105
Lsp1109I	GCAGC	2 cut(s)	784, 891
LweI	GCATC	3 cut(s)	385, 918, 1265
MaeI	CTAG	2 cut(s)	668, 1269
MaeII	ACGT	3 cut(s)	66, 339, 568
MaeIII	GTNAC	3 cut(s)	220, 564, 1048
MalI	GATC	1 cut(s)	963
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	1 cut(s)	961
MboII	GAAGA	4 cut(s)	94, 222, 742, 1064
MfeI	CAATTG	1 cut(s)	653
MhlI	GDGCHC	1 cut(s)	1072
MluCI	AATT	8 cut(s)	324, 609, 653, 807, 824, 1100, 1140, 1162
MluI	ACGCGT	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	2 cut(s)	52, 905
MroXI	GAANNNNTTC	1 cut(s)	1186
MseI	TTAA	7 cut(s)	56, 447, 492, 545, 593, 603, 1056
MslI	CAYNNNNRTG	2 cut(s)	216, 618
MspI	CCGG	1 cut(s)	381
MunI	CAATTG	1 cut(s)	653
Mva1269I	GAATGC	2 cut(s)	358, 646
MvnI	CGCG	3 cut(s)	376, 526, 709
MwoI	GCNNNNNNNGC	6 cut(s)	373, 797, 905, 1067, 1118, 1127
NdeI	CATATG	1 cut(s)	1018
NdeII	GATC	1 cut(s)	961
NlaIV	GGNNCC	1 cut(s)	7
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	3 cut(s)	115, 277, 1086
PagI	TCATGA	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	677
PciI	ACATGT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	1077
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	2 cut(s)	358, 646
PdmI	GAANNNNTTC	1 cut(s)	1186
PflMI	CCANNNNNTGG	1 cut(s)	820
PinAI	ACCGGT	1 cut(s)	380
PkrI	GCNGC	3 cut(s)	589, 799, 881
PleI	GAGTC	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	635
Ppu21I	YACGTR	1 cut(s)	569
PpuMI	RGGWCCY	1 cut(s)	6
PscI	ACATGT	1 cut(s)	273
Psp1406I	AACGTT	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	6
PspEI	GGTNACC	1 cut(s)	1048
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	6
PspPPI	RGGWCCY	1 cut(s)	6
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	2 cut(s)	216, 618
SalI	GTCGAC	2 cut(s)	269, 298
SapI	GCTCTTC	1 cut(s)	1077
SaqAI	TTAA	7 cut(s)	56, 447, 492, 545, 593, 603, 1056
SatI	GCNGC	3 cut(s)	588, 798, 880
Sau3AI	GATC	1 cut(s)	961
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	635
SduI	GDGCHC	1 cut(s)	1072
SfaNI	GCATC	3 cut(s)	385, 918, 1265
SfcI	CTRYAG	1 cut(s)	508
SinI	GGWCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	2 cut(s)	216, 618
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SpeI	ACTAGT	1 cut(s)	1268
Sse9I	AATT	8 cut(s)	324, 609, 653, 807, 824, 1100, 1140, 1162
SseBI	AGGCCT	1 cut(s)	677
SsiI	CCGC	7 cut(s)	177, 187, 191, 261, 303, 587, 721
SspMI	CTAG	2 cut(s)	668, 1269
StuI	AGGCCT	1 cut(s)	677
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	33, 1054
TaiI	ACGT	3 cut(s)	69, 342, 571
TaqI	TCGA	4 cut(s)	138, 270, 299, 501
TasI	AATT	8 cut(s)	324, 609, 653, 807, 824, 1100, 1140, 1162
TauI	GCSGC	1 cut(s)	590
Tru1I	TTAA	7 cut(s)	56, 447, 492, 545, 593, 603, 1056
Tru9I	TTAA	7 cut(s)	56, 447, 492, 545, 593, 603, 1056
TscAI	CASTG	4 cut(s)	129, 870, 915, 1047
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	2 cut(s)	797, 879
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	6 cut(s)	336, 602, 743, 770, 918, 1250
TspGWI	ACGGA	2 cut(s)	196, 1110
TspRI	CASTG	4 cut(s)	129, 870, 915, 1047
Van91I	CCANNNNNTGG	1 cut(s)	820
VpaK11BI	GGWCC	1 cut(s)	6
XagI	CCTNNNNNAGG	1 cut(s)	671
XapI	RAATTY	3 cut(s)	324, 609, 807
XceI	RCATGY	3 cut(s)	115, 277, 1086
XcmI	CCANNNNNNNNNTGG	1 cut(s)	659
XmiI	GTMKAC	2 cut(s)	270, 299
XmnI	GAANNNNTTC	1 cut(s)	1186
XspI	CTAG	2 cut(s)	668, 1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.