pycom17g08120

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013453
Physical Location & Seq
Forward (+)
6062293 .. 6063585
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g08120.1

Sequence Viewer

Length: 1293 bp
ATGGGGTCCTACAACCAATCAAACTTCCAACGGTTGCTTTCTTTCACCAAGCTCTTAACCTCCCATGTCAGCCAAGGTCGTCATGACGAAGCCCTTTCCCTCTTCCACCACATGCAGACCTCACTGGCTCTATCTCTCGACCCCCATGTCTTCTCTCTTGTTCTCAAGTCCTGCTCCGCCGTCCACCGCCCGCAACTCGGCGTCTCCGTCCATGCCCATGTCGCCAAATCTTCCATCCTATCAAACCCATTTGTGGCTTCTGCTCTTGTCGACATGTATGGCAAGTGCGTGTCATTGTCGACCGCACGCAACCTGTTTGATGAAATTGCTCACAGGAACGTTGTTGTGTGGAATGCTATGATATCACTTTATACGCGTAACGGTAATGTGTTCGATGCTTTGGGATTGTCTGACGTAATGGATGTTGAACCCGATGTGTCAACTTTTAATACCATTATATCTGGTATGTCAGGATTGGATGATGGGTCGTTTAAGGCTGTCGAGTTCTATAGGAAAATGAGAGCGTGCGGAAGGGAACCGGATTTAATAACGCTGCTTGCTCTGTTACGTGCTTTTGTTGATATAGCGGCTTTAAGGTTTATTAAGGAAATTCATGGTTATGATGTGAGAAATGAGATTGACTCGCATTCCCAATTGAGTAGTGGCCTAGTAGAGGCCTACGGGCGCTGTGGTTGTCTTGCAAATGCGCGTAATCTGTTCTGCTATATGAAGAAAAAGGATGTGGTTGCATGGAGTAGTCTGATATCTGCGTATGCACTTCATGGGGAGGCAAGAGCTGCATTGGAAATTTTCAGAGAGATGGAATTGGGGAAAGTAGAGCCTGATGAGATTACTTTTCTTGCGGTGCTGAAGGCATGCAGCCATGCTGAAGGATTAGCAGATGAAGCACTGCATTGTGTTGGTCGGATGCGTGAGGATTATGGTGTGCAAGCAAATAGTGATCACTATTCTTGTTTAGTAGATGTTCTGAGCAGAGCAGGGAGGTTGCATGAGGCATATGAGGTCATAAGGAAAATGCCAGTGAAGGTGACTGCTAAAGCTTGGGGTGCTCTTCTTTCAGCATGTAGAACTTACGGAGACTTGGACCTTGCTGAGATTGCAGGGAAAGCTCTGTCCGAAATTGAACCTGATAATCCTGCCAATTATTTACTATTGGCAAGAATGTATTCTGGCTTAGGCAGGCATGAGGAAGCGCAACGAATGAGAAGGAAAATGAAGGAGAAGGGAGTGAAGGCATCATCTGGCACTAGTTGGGTGGTTTATCAAGACTAA

Protein Analysis

431

Amino Acids

47.59

Weight (kDa)

6.79

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 112 - 156 6.4e-08 PPR repeat family
PPR_2 PF13041 144 - 193 5.5e-06 PPR repeat family
PPR_2 PF13041 246 - 294 5.4e-10 PPR repeat family
PPR_3 PF13812 246 - 293 2.2e-07 Pentatricopeptide repeat domain
PPR PF01535 249 - 275 8.4e-06 PPR repeat
PPR_long PF17177 262 - 367 5.7e-08 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 365 - 426 9.5e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03510
fragaria_vesca FvH4_6g44770
malus_domestica MD09G1093700.v1.1 MD17G1083400.v1.1
prunus_persica Prupe.3G231700_v2.0.a1
pyrus_communis pycom09g01890 pycom17g08120
rosa_chinensis RchiOBHm_Chr2g0161921
rosa_laevigata RLG00000021307
rosa_multiflora Rmu_sc0008565.1_g000004 Rmu_sc0018381.1_g000006
rosa_roxburghii Rroxscaffold_2G00088460
rosa_rugosa Rorug02G0493200
rosa_samantha Rh2AG559100 Rh2BG572500 Rh2CG542800 Rh2DG582300
rosa_wichuraiana Rw2G046280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AccI GTMKAC 2 cut(s) 270, 299
AccII CGCG 2 cut(s) 376, 709
AciI CCGC 7 cut(s) 177, 187, 191, 303, 528, 587, 863
AclI AACGTT 1 cut(s) 339
AcsI RAATTY 2 cut(s) 609, 807
AcuI CTGAAG 2 cut(s) 890, 909
AcyI GRCGYC 1 cut(s) 201
AfiI CCNNNNNNNGG 3 cut(s) 197, 253, 673
AflIII ACRYGT 2 cut(s) 273, 374
AgsI TTSAA 2 cut(s) 428, 1145
AhlI ACTAGT 1 cut(s) 1268
AluBI AGCT 4 cut(s) 52, 797, 1061, 1130
AluI AGCT 4 cut(s) 52, 797, 1061, 1130
Alw21I GWGCWC 1 cut(s) 1072
Alw26I GTCTC 2 cut(s) 208, 1092
AoxI GGCC 2 cut(s) 664, 675
ApeKI GCWGC 3 cut(s) 553, 797, 879
ApoI RAATTY 2 cut(s) 609, 807
Asp700I GAANNNNTTC 1 cut(s) 1186
AspLEI GCGC 3 cut(s) 687, 709, 1216
AspS9I GGNCC 2 cut(s) 6, 1105
AsuHPI GGTGA 2 cut(s) 37, 1060
AvaII GGWCC 2 cut(s) 6, 1105
BbsI GAAGAC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 1072
BbvI GCAGC 3 cut(s) 540, 784, 891
BccI CCATC 3 cut(s) 242, 476, 814
BceAI ACGGC 1 cut(s) 164
BclI TGATCA 1 cut(s) 961
BcoDI GTCTC 2 cut(s) 208, 1092
BcuI ACTAGT 1 cut(s) 1268
BfaI CTAG 2 cut(s) 668, 1269
BfmI CTRYAG 1 cut(s) 508
BfoI RGCGCY 1 cut(s) 688
BisI GCNGC 4 cut(s) 554, 588, 798, 880
BlsI GCNGC 4 cut(s) 555, 589, 799, 881
Bme18I GGWCC 2 cut(s) 6, 1105
BmgT120I GGNCC 2 cut(s) 6, 1105
BmiI GGNNCC 2 cut(s) 7, 537
BmsI GCATC 3 cut(s) 385, 918, 1265
BpiI GAAGAC 1 cut(s) 142
BplI GAGNNNNNCTC 2 cut(s) 626, 658
Bpu10I CCTNAGC 1 cut(s) 1195
BpuEI CTTGAG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 569
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 538
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 253, 673
Bse1I ACTGG 2 cut(s) 129, 1040
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 5 cut(s) 234, 427, 484, 745, 933
BseLI CCNNNNNNNGG 3 cut(s) 197, 253, 673
BseMII CTCAG 2 cut(s) 980, 1104
BseNI ACTGG 2 cut(s) 129, 1040
BseXI GCAGC 3 cut(s) 540, 784, 891
Bsh1236I CGCG 2 cut(s) 376, 709
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 2 cut(s) 666, 677
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 1072
BsiSI CCGG 1 cut(s) 539
BslI CCNNNNNNNGG 3 cut(s) 197, 253, 673
BsmAI GTCTC 2 cut(s) 208, 1092
BsmBI CGTCTC 1 cut(s) 208
BsmI GAATGC 2 cut(s) 358, 646
BsnI GGCC 2 cut(s) 666, 677
Bsp1286I GDGCHC 1 cut(s) 1072
Bsp143I GATC 1 cut(s) 961
BspACI CCGC 7 cut(s) 177, 187, 191, 303, 528, 587, 863
BspANI GGCC 2 cut(s) 666, 677
BspCNI CTCAG 2 cut(s) 981, 1105
BspFNI CGCG 2 cut(s) 376, 709
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 7, 537
BspQI GCTCTTC 1 cut(s) 1077
BsrI ACTGG 2 cut(s) 129, 1040
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 961
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 73
Bst4CI ACNGT 2 cut(s) 33, 383
Bst6I CTCTTC 2 cut(s) 107, 1077
BstACI GRCGYC 1 cut(s) 201
BstAPI GCANNNNNTGC 1 cut(s) 797
BstBAI YACGTR 1 cut(s) 569
BstC8I GCNNGC 7 cut(s) 191, 307, 526, 558, 877, 951, 1202
BstDEI CTNAG 3 cut(s) 989, 1113, 1195
BstENI CCTNNNNNAGG 1 cut(s) 671
BstF5I GGATG 5 cut(s) 234, 427, 484, 745, 933
BstFNI CGCG 2 cut(s) 376, 709
BstH2I RGCGCY 1 cut(s) 688
BstHHI GCGC 3 cut(s) 687, 709, 1216
BstKTI GATC 1 cut(s) 964
BstMAI GTCTC 2 cut(s) 208, 1092
BstMBI GATC 1 cut(s) 961
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 6 cut(s) 221, 797, 905, 1067, 1118, 1127
BstNSI RCATGY 4 cut(s) 115, 277, 879, 1086
BstSFI CTRYAG 1 cut(s) 508
BstUI CGCG 2 cut(s) 376, 709
BstV1I GCAGC 3 cut(s) 540, 784, 891
BstV2I GAAGAC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 666, 677
BtsCI GGATG 5 cut(s) 234, 427, 484, 745, 933
BtsI GCAGTG 1 cut(s) 908
BtsIMutI CAGTG 3 cut(s) 122, 908, 1047
Cac8I GCNNGC 7 cut(s) 191, 307, 526, 558, 877, 951, 1202
CciI TCATGA 1 cut(s) 82
CfoI GCGC 3 cut(s) 687, 709, 1216
Cfr13I GGNCC 2 cut(s) 6, 1105
CseI GACGC 1 cut(s) 190
DdeI CTNAG 3 cut(s) 989, 1113, 1195
DpnI GATC 1 cut(s) 963
DpnII GATC 1 cut(s) 961
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
Eam1104I CTCTTC 2 cut(s) 107, 1077
EarI CTCTTC 2 cut(s) 107, 1077
EciI GGCGGA 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 677
Eco32I GATATC 2 cut(s) 363, 765
Eco47I GGWCC 2 cut(s) 6, 1105
Eco57I CTGAAG 2 cut(s) 890, 909
EcoNI CCTNNNNNAGG 1 cut(s) 671
EcoO109I RGGNCCY 1 cut(s) 6
EcoRV GATATC 2 cut(s) 363, 765
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 208
FauI CCCGC 1 cut(s) 198
FauNDI CATATG 1 cut(s) 1018
FbaI TGATCA 1 cut(s) 961
FblI GTMKAC 2 cut(s) 270, 299
Fnu4HI GCNGC 4 cut(s) 554, 588, 798, 880
FokI GGATG 5 cut(s) 221, 434, 491, 752, 940
Fsp4HI GCNGC 4 cut(s) 554, 588, 798, 880
FspBI CTAG 2 cut(s) 668, 1269
GlaI GCGC 3 cut(s) 686, 708, 1215
GluI GCNGC 4 cut(s) 554, 588, 798, 880
HaeII RGCGCY 1 cut(s) 688
HaeIII GGCC 2 cut(s) 666, 677
HapII CCGG 1 cut(s) 539
HgaI GACGC 1 cut(s) 190
HhaI GCGC 3 cut(s) 687, 709, 1216
Hin1I GRCGYC 1 cut(s) 201
Hin6I GCGC 3 cut(s) 685, 707, 1214
HinP1I GCGC 3 cut(s) 685, 707, 1214
HincII GTYRAC 3 cut(s) 271, 300, 441
HindII GTYRAC 3 cut(s) 271, 300, 441
HindIII AAGCTT 1 cut(s) 1059
HinfI GANTC 1 cut(s) 641
HpaII CCGG 1 cut(s) 539
HphI GGTGA 2 cut(s) 37, 1060
Hpy166II GTNNAC 4 cut(s) 184, 271, 300, 441
Hpy188I TCNGA 6 cut(s) 412, 762, 815, 927, 990, 1138
Hpy188III TCNNGA 4 cut(s) 83, 137, 471, 1286
Hpy8I GTNNAC 4 cut(s) 184, 271, 300, 441
HpyAV CCTTC 8 cut(s) 525, 865, 884, 1039, 1221, 1231, 1237, 1246
HpyCH4III ACNGT 2 cut(s) 33, 383
HpyCH4IV ACGT 3 cut(s) 339, 414, 568
HpyF10VI GCNNNNNNNGC 6 cut(s) 221, 797, 905, 1067, 1118, 1127
HpyF3I CTNAG 3 cut(s) 989, 1113, 1195
HpySE526I ACGT 3 cut(s) 339, 414, 568
Hsp92I GRCGYC 1 cut(s) 201
HspAI GCGC 3 cut(s) 685, 707, 1214
Ksp22I TGATCA 1 cut(s) 961
Kzo9I GATC 1 cut(s) 961
LguI GCTCTTC 1 cut(s) 1077
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 3 cut(s) 540, 784, 891
LweI GCATC 3 cut(s) 385, 918, 1265
MaeI CTAG 2 cut(s) 668, 1269
MaeII ACGT 3 cut(s) 339, 414, 568
MaeIII GTNAC 3 cut(s) 377, 564, 1048
MalI GATC 1 cut(s) 963
MboI GATC 1 cut(s) 961
MboII GAAGA 5 cut(s) 94, 142, 222, 742, 1064
MfeI CAATTG 1 cut(s) 653
MhlI GDGCHC 1 cut(s) 1072
MluCI AATT 7 cut(s) 324, 609, 653, 807, 824, 1140, 1162
MluI ACGCGT 1 cut(s) 374
MlyI GAGTC 1 cut(s) 635
MmeI TCCRAC 2 cut(s) 52, 905
MroXI GAANNNNTTC 1 cut(s) 1186
MseI TTAA 6 cut(s) 56, 447, 492, 545, 593, 603
MslI CAYNNNNRTG 2 cut(s) 216, 618
MspI CCGG 1 cut(s) 539
MunI CAATTG 1 cut(s) 653
Mva1269I GAATGC 2 cut(s) 358, 646
MvnI CGCG 2 cut(s) 376, 709
MwoI GCNNNNNNNGC 6 cut(s) 221, 797, 905, 1067, 1118, 1127
NdeI CATATG 1 cut(s) 1018
NdeII GATC 1 cut(s) 961
NlaIV GGNNCC 2 cut(s) 7, 537
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 1048
NspI RCATGY 4 cut(s) 115, 277, 879, 1086
PaeI GCATGC 1 cut(s) 879
PagI TCATGA 1 cut(s) 82
PceI AGGCCT 1 cut(s) 677
PciI ACATGT 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 1077
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PctI GAATGC 2 cut(s) 358, 646
PdmI GAANNNNTTC 1 cut(s) 1186
PkrI GCNGC 4 cut(s) 555, 589, 799, 881
PleI GAGTC 1 cut(s) 635
PpsI GAGTC 1 cut(s) 635
Ppu21I YACGTR 1 cut(s) 569
PpuMI RGGWCCY 1 cut(s) 6
PscI ACATGT 1 cut(s) 273
Psp1406I AACGTT 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 7, 537
PspPI GGNCC 2 cut(s) 6, 1105
PspPPI RGGWCCY 1 cut(s) 6
RseI CAYNNNNRTG 2 cut(s) 216, 618
SalI GTCGAC 2 cut(s) 269, 298
SapI GCTCTTC 1 cut(s) 1077
SaqAI TTAA 6 cut(s) 56, 447, 492, 545, 593, 603
SatI GCNGC 4 cut(s) 554, 588, 798, 880
Sau3AI GATC 1 cut(s) 961
Sau96I GGNCC 2 cut(s) 6, 1105
SchI GAGTC 1 cut(s) 635
SduI GDGCHC 1 cut(s) 1072
SfaNI GCATC 3 cut(s) 385, 918, 1265
SfcI CTRYAG 1 cut(s) 508
SinI GGWCC 2 cut(s) 6, 1105
SmiMI CAYNNNNRTG 2 cut(s) 216, 618
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SpeI ACTAGT 1 cut(s) 1268
SphI GCATGC 1 cut(s) 879
Sse9I AATT 7 cut(s) 324, 609, 653, 807, 824, 1140, 1162
SseBI AGGCCT 1 cut(s) 677
SsiI CCGC 7 cut(s) 177, 187, 191, 303, 528, 587, 863
SspMI CTAG 2 cut(s) 668, 1269
StuI AGGCCT 1 cut(s) 677
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 2 cut(s) 33, 383
TaiI ACGT 3 cut(s) 342, 417, 571
TaqI TCGA 5 cut(s) 138, 270, 299, 393, 501
TasI AATT 7 cut(s) 324, 609, 653, 807, 824, 1140, 1162
TauI GCSGC 1 cut(s) 590
Tru1I TTAA 6 cut(s) 56, 447, 492, 545, 593, 603
Tru9I TTAA 6 cut(s) 56, 447, 492, 545, 593, 603
TscAI CASTG 3 cut(s) 129, 915, 1047
TseFI GTSAC 1 cut(s) 1048
TseI GCWGC 3 cut(s) 553, 797, 879
Tsp45I GTSAC 1 cut(s) 1048
TspDTI ATGAA 6 cut(s) 336, 602, 743, 770, 918, 1250
TspGWI ACGGA 2 cut(s) 196, 1110
TspRI CASTG 3 cut(s) 129, 915, 1047
VpaK11BI GGWCC 2 cut(s) 6, 1105
XagI CCTNNNNNAGG 1 cut(s) 671
XapI RAATTY 2 cut(s) 609, 807
XceI RCATGY 4 cut(s) 115, 277, 879, 1086
XcmI CCANNNNNNNNNTGG 1 cut(s) 659
XmiI GTMKAC 2 cut(s) 270, 299
XmnI GAANNNNTTC 1 cut(s) 1186
XspI CTAG 2 cut(s) 668, 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.