Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013453

Physical Location & Seq

Genomic Coordinates Reverse (-)

78900923 .. 78902212

Gene Structure 1290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG572500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGCTCCTACAACACCATATCAAATTTCCAACGCTTGCTCTCTTTCACCAAGCAATTGACCTCCCACGTCAACCAAGGCAGCCATGACAAAGCCCTCACCCTCTTCCACCACATACAAGCCTCACTCGCTCTCCCTCTCGACGCCCACGTCTTCTCTCTCGTCCTCAAGTCCTGCTCCGCCGTCCGCCGCCCCCAACTCGGCGCCGCCGTCCACGCCCACGTCACCAAATCGTCGTTCCTCTCAAACCCTTTTGTGGCCTGCGCTCTCGTTGACATGTACGGAAAATGCGTCTCGCTTTGGGCTGCACGCCACTTGTTCGATGAAATTCCTCACAGAAATGTTGTTGTGTGGAATGCCATGATTTCGGTTTGTACCCGCAATGGTGATATTGCTGAAGCTTTGAGGTTGTTTGAGGCTATGGATGTTGAGCCTGATGTGTCGACTTATAACACCATTATAACCGGAACGTCGGGGATGGATGATGGGTTGTTTAGGGCTGTGGAGGTGTATAGGAAAATGTGCGAAAGAGGGTGGAAGCCGGATTTGATCACACTTCTTGCTCTGTTACGTGCTTGTGTTGGTGTAGCGGCTTTTAGGTTTATTAAGGAAATTCATGGTTATGATGTAAGGAATGGGATTGACTCCCATTCGCAGTTGAGTAGCGGTTTAGTAGAGGCCTATGGGCGTTGTGGTTGTCTCAAAAATGCGCATAGTGTTTTCCGGGGCTTGAAGGAGAAGGATGTGGTTGCGTGGAGCAGTTTGGTATCAGTGTATGCGGTTCATGGAGAGGCAAGAGCTGCATTTGATGTTTTTAGAGAAATGGAATCGGCGAAAGTGGAGCCTGATGAGATTACTTTCCTTGCGGTACTGAAAGCGTGTAGCCATGCCGAAGGATTAGCTGATGAAGCACTGAGTTATTTTGATTGCATGCGTAATTATGGCGTGCAACCAAACAGTGATCACTATTCTTGTTTAGTAGATGTTTTGAGCAGAGCAGGGAGGTTATGCGAGGCGTATGAGGTCATAAGGAAGATGCCAGTGAGGGTCACTGCTAGAGCTTGGGGTGCCCTTCTTTCGGGGTGTAGAACTCATGGAAACCTGGAGCTTGCGGAGATAGCAGGGAAAGCTTTGTCCGAACTTGAGCCCGATAATCCTTCCCATTATTTATTGTTGTCAACGATTTATGTTAGCTTAGGAAGGCATGATGAAGCTCAGAGAATGAGAAGGGAAATGAGGCAGAAAGGTGTGAAGGCACCGGTTGGAAGTAGTTGGATGGTTCAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

429

Amino Acids

47.55

Weight (kDa)

7.27

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	113 - 156	3.1e-11	PPR repeat family
PPR	PF01535	116 - 141	2.2e-06	PPR repeat
PPR_2	PF13041	145 - 194	2.6e-07	PPR repeat family
PPR_2	PF13041	247 - 295	3.4e-10	PPR repeat family
PPR_3	PF13812	247 - 294	9.1e-07	Pentatricopeptide repeat domain
TPR_24	PF23276	259 - 346	2.5e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	264 - 347	1.6e-08	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	365 - 426	9e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03510
fragaria_vesca	FvH4_6g44770
malus_domestica	MD09G1093700.v1.1 MD17G1083400.v1.1
prunus_persica	Prupe.3G231700_v2.0.a1
pyrus_communis	pycom09g01890 pycom17g08120
rosa_chinensis	RchiOBHm_Chr2g0161921
rosa_laevigata	RLG00000021307
rosa_multiflora	Rmu_sc0008565.1_g000004 Rmu_sc0018381.1_g000006
rosa_roxburghii	Rroxscaffold_2G00088460
rosa_rugosa	Rorug02G0493200
rosa_samantha	Rh2AG559100 Rh2BG572500 Rh2CG542800 Rh2DG582300
rosa_wichuraiana	Rw2G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	450, 461
AasI	GACNNNNNNGTC	1 cut(s)	149
Acc16I	TGCGCA	1 cut(s)	711
AccB1I	GGYRCC	3 cut(s)	203, 1067, 1255
AccI	GTMKAC	1 cut(s)	443
AcsI	RAATTY	3 cut(s)	25, 327, 612
AcuI	CTGAAG	1 cut(s)	417
AcyI	GRCGYC	2 cut(s)	144, 204
AfaI	GTAC	3 cut(s)	281, 376, 870
AfiI	CCNNNNNNNGG	3 cut(s)	200, 256, 1078
AflIII	ACRYGT	1 cut(s)	276
AgeI	ACCGGT	1 cut(s)	1258
AgsI	TTSAA	2 cut(s)	733, 1283
AjiI	CACGTC	3 cut(s)	70, 151, 223
AjnI	CCWGG	1 cut(s)	1101
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	8 cut(s)	401, 800, 902, 1061, 1108, 1130, 1194, 1214
AluI	AGCT	8 cut(s)	401, 800, 902, 1061, 1108, 1130, 1194, 1214
Alw26I	GTCTC	2 cut(s)	298, 704
AoxI	GGCC	2 cut(s)	258, 678
ApeKI	GCWGC	3 cut(s)	81, 305, 800
ApoI	RAATTY	3 cut(s)	25, 327, 612
AsiGI	ACCGGT	1 cut(s)	1258
AspLEI	GCGC	3 cut(s)	206, 266, 712
AsuC2I	CCSGG	1 cut(s)	725
AsuHPI	GGTGA	4 cut(s)	40, 91, 217, 398
BaeGI	GKGCMC	1 cut(s)	1072
BanI	GGYRCC	3 cut(s)	203, 1067, 1255
BanII	GRGCYC	2 cut(s)	8, 1149
BbsI	GAAGAC	1 cut(s)	145
BbvI	GCAGC	3 cut(s)	93, 292, 787
BccI	CCATC	3 cut(s)	472, 479, 1270
BceAI	ACGGC	2 cut(s)	167, 194
BciT130I	CCWGG	1 cut(s)	1103
BclI	TGATCA	2 cut(s)	549, 961
BcnI	CCSGG	1 cut(s)	725
BcoDI	GTCTC	2 cut(s)	298, 704
BfaI	CTAG	1 cut(s)	1056
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	6 cut(s)	82, 190, 207, 306, 591, 801
BlsI	GCNGC	6 cut(s)	83, 191, 208, 307, 592, 802
Bme1390I	CCNGG	2 cut(s)	725, 1103
BmgBI	CACGTC	3 cut(s)	70, 151, 223
BmiI	GGNNCC	5 cut(s)	7, 205, 843, 1069, 1257
BmrFI	CCNGG	2 cut(s)	725, 1103
BmsI	GCATC	1 cut(s)	1026
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	1124
Bpu10I	CCTNAGC	1 cut(s)	1195
BpuEI	CTTGAG	2 cut(s)	152, 1163
BpuMI	CCSGG	1 cut(s)	725
BsaAI	YACGTR	1 cut(s)	572
BsaHI	GRCGYC	2 cut(s)	144, 204
BsaJI	CCNNGG	2 cut(s)	76, 724
BsaWI	WCCGGW	2 cut(s)	464, 1258
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 256, 1078
Bse118I	RCCGGY	1 cut(s)	1258
Bse1I	ACTGG	1 cut(s)	1040
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	1103
BseDI	CCNNGG	2 cut(s)	76, 724
BseGI	GGATG	5 cut(s)	430, 483, 487, 748, 1281
BseLI	CCNNNNNNNGG	3 cut(s)	200, 256, 1078
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	2 cut(s)	905, 1229
BseNI	ACTGG	1 cut(s)	1040
BseSI	GKGCMC	1 cut(s)	1072
BseXI	GCAGC	3 cut(s)	93, 292, 787
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	260, 680
BshNI	GGYRCC	3 cut(s)	203, 1067, 1255
BshTI	ACCGGT	1 cut(s)	1258
BsiSI	CCGG	4 cut(s)	465, 542, 724, 1259
BslI	CCNNNNNNNGG	3 cut(s)	200, 256, 1078
BsmAI	GTCTC	2 cut(s)	298, 704
BsmBI	CGTCTC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	260, 680
Bsp1286I	GDGCHC	3 cut(s)	8, 1072, 1149
Bsp143I	GATC	2 cut(s)	549, 961
BspANI	GGCC	2 cut(s)	260, 680
BspCNI	CTCAG	2 cut(s)	906, 1228
BspLI	GGNNCC	5 cut(s)	7, 205, 843, 1069, 1257
BspT107I	GGYRCC	3 cut(s)	203, 1067, 1255
BsrDI	GCAATG	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	1258
BsrI	ACTGG	1 cut(s)	1040
BssAI	RCCGGY	1 cut(s)	1258
BssECI	CCNNGG	2 cut(s)	76, 724
BssMI	GATC	2 cut(s)	549, 961
BssNI	GRCGYC	2 cut(s)	144, 204
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	1103
Bst4CI	ACNGT	1 cut(s)	959
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	2 cut(s)	144, 204
BstAPI	GCANNNNNTGC	1 cut(s)	800
BstBAI	YACGTR	1 cut(s)	572
BstC8I	GCNNGC	6 cut(s)	38, 262, 310, 932, 947, 1110
BstDEI	CTNAG	3 cut(s)	914, 1195, 1215
BstF5I	GGATG	5 cut(s)	430, 483, 487, 748, 1281
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	3 cut(s)	206, 266, 712
BstKTI	GATC	2 cut(s)	552, 964
BstMAI	GTCTC	2 cut(s)	298, 704
BstMBI	GATC	2 cut(s)	549, 961
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 215, 800, 908, 1067, 1118, 1127
BstNI	CCWGG	1 cut(s)	1103
BstNSI	RCATGY	2 cut(s)	280, 934
BstSCI	CCNGG	2 cut(s)	723, 1101
BstSLI	GKGCMC	1 cut(s)	1072
BstV1I	GCAGC	3 cut(s)	93, 292, 787
BstV2I	GAAGAC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	260, 680
BtrI	CACGTC	3 cut(s)	70, 151, 223
BtsCI	GGATG	5 cut(s)	430, 483, 487, 748, 1281
BtsI	GCAGTG	1 cut(s)	1050
BtsIMutI	CAGTG	5 cut(s)	777, 911, 964, 1047, 1050
Cac8I	GCNNGC	6 cut(s)	38, 262, 310, 932, 947, 1110
CfoI	GCGC	3 cut(s)	206, 266, 712
Cfr10I	RCCGGY	1 cut(s)	1258
CseI	GACGC	2 cut(s)	152, 280
Csp6I	GTAC	3 cut(s)	280, 375, 869
CspAI	ACCGGT	1 cut(s)	1258
CviAII	CATG	9 cut(s)	86, 277, 361, 617, 785, 887, 931, 1094, 1205
CviQI	GTAC	3 cut(s)	280, 375, 869
DdeI	CTNAG	3 cut(s)	914, 1195, 1215
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	2 cut(s)	551, 963
DpnII	GATC	2 cut(s)	549, 961
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	2 cut(s)	169, 176
Eco130I	CCWWGG	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	680
Eco24I	GRGCYC	2 cut(s)	8, 1149
Eco57I	CTGAAG	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	1101
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	2 cut(s)	8, 1149
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	9 cut(s)	89, 280, 364, 620, 788, 890, 934, 1097, 1208
FatI	CATG	9 cut(s)	85, 276, 360, 616, 784, 886, 930, 1093, 1204
FauI	CCCGC	1 cut(s)	386
FbaI	TGATCA	2 cut(s)	549, 961
FblI	GTMKAC	1 cut(s)	443
Fnu4HI	GCNGC	6 cut(s)	82, 190, 207, 306, 591, 801
FokI	GGATG	4 cut(s)	437, 490, 494, 755
FriOI	GRGCYC	2 cut(s)	8, 1149
Fsp4HI	GCNGC	6 cut(s)	82, 190, 207, 306, 591, 801
FspAI	RTGCGCAY	1 cut(s)	711
FspBI	CTAG	1 cut(s)	1056
FspI	TGCGCA	1 cut(s)	711
GlaI	GCGC	3 cut(s)	205, 265, 711
GluI	GCNGC	6 cut(s)	82, 190, 207, 306, 591, 801
GsuI	CTGGAG	1 cut(s)	1124
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	260, 680
HapII	CCGG	4 cut(s)	465, 542, 724, 1259
HgaI	GACGC	2 cut(s)	152, 280
HhaI	GCGC	3 cut(s)	206, 266, 712
Hin1I	GRCGYC	2 cut(s)	144, 204
Hin1II	CATG	9 cut(s)	89, 280, 364, 620, 788, 890, 934, 1097, 1208
Hin6I	GCGC	3 cut(s)	204, 264, 710
HinP1I	GCGC	3 cut(s)	204, 264, 710
HincII	GTYRAC	4 cut(s)	73, 274, 444, 1179
HindII	GTYRAC	4 cut(s)	73, 274, 444, 1179
HindIII	AAGCTT	2 cut(s)	399, 1128
HinfI	GANTC	2 cut(s)	644, 827
HpaII	CCGG	4 cut(s)	465, 542, 724, 1259
HphI	GGTGA	4 cut(s)	40, 91, 217, 398
Hpy166II	GTNNAC	5 cut(s)	73, 214, 274, 444, 1179
Hpy188I	TCNGA	2 cut(s)	1138, 1218
Hpy188III	TCNNGA	2 cut(s)	140, 1283
Hpy8I	GTNNAC	5 cut(s)	73, 214, 274, 444, 1179
Hpy99I	CGWCG	3 cut(s)	146, 238, 475
HpyAV	CCTTC	8 cut(s)	727, 733, 887, 1082, 1167, 1194, 1221, 1246
HpyCH4III	ACNGT	1 cut(s)	959
HpyCH4IV	ACGT	5 cut(s)	69, 150, 222, 470, 571
HpyCH4V	TGCA	4 cut(s)	308, 803, 930, 949
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 215, 800, 908, 1067, 1118, 1127
HpyF3I	CTNAG	3 cut(s)	914, 1195, 1215
HpySE526I	ACGT	5 cut(s)	69, 150, 222, 470, 571
Hsp92I	GRCGYC	2 cut(s)	144, 204
Hsp92II	CATG	9 cut(s)	89, 280, 364, 620, 788, 890, 934, 1097, 1208
HspAI	GCGC	3 cut(s)	204, 264, 710
KasI	GGCGCC	1 cut(s)	203
Ksp22I	TGATCA	2 cut(s)	549, 961
Kzo9I	GATC	2 cut(s)	549, 961
LmnI	GCTCC	5 cut(s)	11, 182, 756, 841, 1105
Lsp1109I	GCAGC	3 cut(s)	93, 292, 787
LweI	GCATC	1 cut(s)	1026
MaeI	CTAG	1 cut(s)	1056
MaeII	ACGT	5 cut(s)	69, 150, 222, 470, 571
MaeIII	GTNAC	3 cut(s)	223, 567, 1048
MalI	GATC	2 cut(s)	551, 963
MboI	GATC	2 cut(s)	549, 961
MboII	GAAGA	3 cut(s)	97, 145, 1045
MfeI	CAATTG	1 cut(s)	56
MhlI	GDGCHC	3 cut(s)	8, 1072, 1149
MluCI	AATT	5 cut(s)	25, 56, 327, 612, 937
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	3 cut(s)	55, 1243, 1253
MseI	TTAA	1 cut(s)	606
MslI	CAYNNNNRTG	2 cut(s)	339, 621
MspI	CCGG	4 cut(s)	465, 542, 724, 1259
MspR9I	CCNGG	2 cut(s)	725, 1103
MunI	CAATTG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	1103
MwoI	GCNNNNNNNGC	7 cut(s)	128, 215, 800, 908, 1067, 1118, 1127
NarI	GGCGCC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	725
NdeII	GATC	2 cut(s)	549, 961
NlaIII	CATG	9 cut(s)	89, 280, 364, 620, 788, 890, 934, 1097, 1208
NlaIV	GGNNCC	5 cut(s)	7, 205, 843, 1069, 1257
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	2 cut(s)	223, 1048
NsbI	TGCGCA	1 cut(s)	711
NspI	RCATGY	2 cut(s)	280, 934
PaeI	GCATGC	1 cut(s)	934
PceI	AGGCCT	1 cut(s)	680
PciI	ACATGT	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	3 cut(s)	147, 207, 288
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	827
PinAI	ACCGGT	1 cut(s)	1258
PkrI	GCNGC	6 cut(s)	83, 191, 208, 307, 592, 802
PleI	GAGTC	1 cut(s)	638
PluTI	GGCGCC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	638
Ppu21I	YACGTR	1 cut(s)	572
PscI	ACATGT	1 cut(s)	276
PsiI	TTATAA	2 cut(s)	450, 461
Psp6I	CCWGG	1 cut(s)	1101
PspGI	CCWGG	1 cut(s)	1101
PspN4I	GGNNCC	5 cut(s)	7, 205, 843, 1069, 1257
RsaI	GTAC	3 cut(s)	281, 376, 870
RsaNI	GTAC	3 cut(s)	280, 375, 869
RseI	CAYNNNNRTG	2 cut(s)	339, 621
SalI	GTCGAC	1 cut(s)	442
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	6 cut(s)	82, 190, 207, 306, 591, 801
Sau3AI	GATC	2 cut(s)	549, 961
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	2 cut(s)	725, 1103
SduI	GDGCHC	3 cut(s)	8, 1072, 1149
SfaNI	GCATC	1 cut(s)	1026
SfoI	GGCGCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	2 cut(s)	339, 621
SmlI	CTYRAG	2 cut(s)	167, 1142
SmoI	CTYRAG	2 cut(s)	167, 1142
SphI	GCATGC	1 cut(s)	934
Sse9I	AATT	5 cut(s)	25, 56, 327, 612, 937
SseBI	AGGCCT	1 cut(s)	680
SspDI	GGCGCC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	1056
StuI	AGGCCT	1 cut(s)	680
StyD4I	CCNGG	2 cut(s)	723, 1101
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	959
TaiI	ACGT	5 cut(s)	72, 153, 225, 473, 574
TaqI	TCGA	3 cut(s)	141, 321, 443
TasI	AATT	5 cut(s)	25, 56, 327, 612, 937
TauI	GCSGC	3 cut(s)	192, 209, 593
TfiI	GAWTC	1 cut(s)	827
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	5 cut(s)	777, 918, 964, 1047, 1057
TseFI	GTSAC	2 cut(s)	223, 1048
TseI	GCWGC	3 cut(s)	81, 305, 800
Tsp45I	GTSAC	2 cut(s)	223, 1048
TspDTI	ATGAA	5 cut(s)	339, 605, 773, 921, 1224
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	5 cut(s)	777, 918, 964, 1047, 1057
XapI	RAATTY	3 cut(s)	25, 327, 612
XceI	RCATGY	2 cut(s)	280, 934
XmiI	GTMKAC	1 cut(s)	443
XspI	CTAG	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.