AT1G03960

serine threonine protein phosphatase 2A regulatory subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
1013643 .. 1017957
4315 bp
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UTR
Exon/CDS
Intron
AT1G03960.5

Sequence Viewer

Length: 1590 bp
ATGGATATTGACGGAGTAGACGACGATCTTCATATTTTAGATCCTGAGCTCTTGCAGCTCCCCGGTTTGTCTCCTTCTCCCCTCAAACCAACCTCTCTTATTGCTGATGACCTCTTCTCTCAGTGGCTCTCACTCCCTGAAACTGCCACATTGGTCAAGTCTTTGATTGATGATGCTAAATCTGGAACACCAACTAATAAATCCAAGAATTTGCCTTCTGTGTTTCTGAGCAGCAGCACTCCCCCACTATCTCCACGAAGCTCCTCTGGTTCCCCTCGTTTCTCCAGGCAAAGGACTAGCCCTCCTTCTCTCCACTCTCCTCTTAGATCACTCAAGGAGCCAAAGCGCCAACTCATTCCTCAGTTCTACTACCAACACGGGCGTCCACCAGCAAAAGAACTAAAGGAGCAATGTCTATCCATGGTTGATCAAGTTTTTAGTAACTATATTGATGGACTACATGTAGATGAATTCAAATCCATTACGAAACAAGTCTGCAAGCTGCCTTCTTTTCTTTCTCCTGCACTTTTCAGAAAGATCGATCCCAATTGCACTGATATAGTTACAAGGGATGCATTTATCAAGTATTGGATTGATGGCAATATGTTAACTATGGACACAGCCTCCCAGATATATAATATACTAAGGCAGCAGGGCTGCAGCTATCTCAGACAGGCAGACTTCAAACCAGTTCTTGATGAGCTTCTGGCAACACATCCTGGATTAGAATTTTTGAGGACGATAAGCGAGTTTCAAGAAAGATATGCTGAAACGGTCATCTACAGAATATTTTACTACATTAACAGATCCGGAACTGGCTGCCTTACTCTTAGAGAGCTGAGACGTGGAAATTTAATTGCTGCTATGCAACAACTTGATGAAGAGGACGACATTAATAAAATTATTAGGTACTTCTCCTATGAGCACTTCTACGTGATATACTGCAAATTTTGGGAACTTGATGGTGACCATGATTGTTTTATTGATAAGGACAATCTCATCAAATATGGTAATAATGCCCTTACCTACAGGATTGTTGATAGAATATTTTCACAGATTCCAAGGAAGTTTACGAGTAAAGTTGAAGGGAAGATGAGTTATGAAGATTTTGTGTACTTCATTCTCGCTGAGGAAGACAAGTCTTCCGAGCCTAGTCTTGAGTATTGGTTCAAATGCGTAGACTTGGATGGAAATGGGGTAATCACTTCAAACGAAATGCAGTTTTTCTTCGAAGAGCAGCTGCATCGCATGGAATGCATAACCCAGGAAGCTGTTCTTTTCAGTGATATCCTATGTCAAATAATTGACATGATTGGACCCGAGAAGGAGAACTGTATCACCCTCCAGGATCTGAAAGGATCGAAACTTTCAGCAAACGTTTTCAATATACTCTTCAACCTTAATAAGTTCATGGCATTTGAAACACGTGACCCATTTCTCATTCGCCAGGAACGGGAAGATCCAAATTTGACAGAGTGGGATCGATTTGCTCAGAGAGAGTATGCGAGATTGTCAATGGAGGAAGATGTAGATGAAGTCTCAAATGGGAGTGCAGATGTCTGGGATGAACCACTCGAACCTCCATTTTAG

Protein Analysis

529

Amino Acids

61.24

Weight (kDa)

4.83

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_13 PF17958 206 - 295 6.1e-33 EF-hand domain
EF-hand_7 PF13499 311 - 410 1.7e-08 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 18, 1179
AccIII TCCGGA 1 cut(s) 809
AclI AACGTT 1 cut(s) 1377
AclWI GGATC 7 cut(s) 35, 536, 801, 1356, 1366, 1454, 1488
AcsI RAATTY 6 cut(s) 208, 470, 728, 850, 947, 1465
AcvI CACGTG 1 cut(s) 1427
AcyI GRCGYC 1 cut(s) 382
AfaI GTAC 2 cut(s) 911, 1115
AfiI CCNNNNNNNGG 2 cut(s) 291, 1453
AflIII ACRYGT 2 cut(s) 460, 1424
AgsI TTSAA 9 cut(s) 475, 685, 755, 1085, 1171, 1209, 1384, 1396, 1421
AjiI CACGTC 1 cut(s) 845
AjnI CCWGG 5 cut(s) 284, 718, 1263, 1344, 1446
AluBI AGCT 9 cut(s) 49, 58, 261, 502, 663, 703, 838, 1240, 1271
AluI AGCT 9 cut(s) 49, 58, 261, 502, 663, 703, 838, 1240, 1271
Alw21I GWGCWC 2 cut(s) 51, 927
Alw26I GTCTC 3 cut(s) 75, 835, 1543
AlwI GGATC 7 cut(s) 35, 536, 801, 1356, 1366, 1454, 1488
AlwNI CAGNNNCTG 1 cut(s) 1351
Ama87I CYCGRG 1 cut(s) 1319
Aor13HI TCCGGA 1 cut(s) 809
ApoI RAATTY 6 cut(s) 208, 470, 728, 850, 947, 1465
AseI ATTAAT 1 cut(s) 894
Asp700I GAANNNNTTC 2 cut(s) 1048, 1272
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 1316
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 2 cut(s) 977, 1330
AsuII TTCGAA 1 cut(s) 1230
AvaI CYCGRG 1 cut(s) 1319
AvaII GGWCC 1 cut(s) 1316
BanII GRGCYC 1 cut(s) 51
BbrPI CACGTG 1 cut(s) 1427
BbsI GAAGAC 2 cut(s) 1134, 1140
Bbv12I GWGCWC 2 cut(s) 51, 927
BbvCI CCTCAGC 1 cut(s) 1128
BccI CCATC 4 cut(s) 446, 590, 956, 1181
BcgI CGANNNNNNTGC 2 cut(s) 1226, 1260
BciT130I CCWGG 5 cut(s) 286, 720, 1265, 1346, 1448
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 3 cut(s) 75, 835, 1543
BfaI CTAG 2 cut(s) 297, 1152
BfmI CTRYAG 3 cut(s) 658, 781, 1027
BfoI RGCGCY 1 cut(s) 349
Bme1390I CCNGG 6 cut(s) 63, 286, 720, 1265, 1346, 1448
Bme18I GGWCC 1 cut(s) 1316
BmeT110I CYCGRG 1 cut(s) 1319
BmgBI CACGTC 1 cut(s) 845
BmgT120I GGNCC 1 cut(s) 1316
BmiI GGNNCC 3 cut(s) 271, 339, 1318
BmrFI CCNGG 6 cut(s) 63, 286, 720, 1265, 1346, 1448
BmsI GCATC 3 cut(s) 163, 562, 1252
BpiI GAAGAC 2 cut(s) 1134, 1140
BpmI CTGGAG 2 cut(s) 268, 1328
Bpu10I CCTNAGC 2 cut(s) 45, 1128
Bpu14I TTCGAA 1 cut(s) 1230
BpuEI CTTGAG 2 cut(s) 317, 1178
BpuMI CCSGG 1 cut(s) 63
Bsa29I ATCGAT 2 cut(s) 540, 1483
BsaAI YACGTR 2 cut(s) 934, 1427
BsaHI GRCGYC 1 cut(s) 382
BsaJI CCNNGG 4 cut(s) 61, 420, 1061, 1263
BsaWI WCCGGW 1 cut(s) 809
BsaXI ACNNNNNCTCC 4 cut(s) 286, 316, 608, 638
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 1453
Bse1I ACTGG 2 cut(s) 689, 820
Bse3DI GCAATG 1 cut(s) 416
BseAI TCCGGA 1 cut(s) 809
BseBI CCWGG 5 cut(s) 286, 720, 1265, 1346, 1448
BseCI ATCGAT 2 cut(s) 540, 1483
BseDI CCNNGG 4 cut(s) 61, 420, 1061, 1263
BseGI GGATG 4 cut(s) 577, 715, 1192, 1570
BseLI CCNNNNNNNGG 2 cut(s) 291, 1453
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 8 cut(s) 36, 134, 218, 374, 682, 830, 1119, 1505
BseNI ACTGG 2 cut(s) 689, 820
BseRI GAGGAG 2 cut(s) 253, 309
BsgI GTGCAG 2 cut(s) 507, 1572
BshVI ATCGAT 2 cut(s) 540, 1483
BsiHKAI GWGCWC 2 cut(s) 51, 927
BsiHKCI CYCGRG 1 cut(s) 1319
BsiSI CCGG 2 cut(s) 63, 810
BslI CCNNNNNNNGG 2 cut(s) 291, 1453
BsmAI GTCTC 3 cut(s) 75, 835, 1543
BsmBI CGTCTC 1 cut(s) 835
BsmI GAATGC 1 cut(s) 1259
BsoBI CYCGRG 1 cut(s) 1319
Bsp119I TTCGAA 1 cut(s) 1230
Bsp1286I GDGCHC 2 cut(s) 51, 927
Bsp13I TCCGGA 1 cut(s) 809
Bsp19I CCATGG 1 cut(s) 420
BspCNI CTCAG 8 cut(s) 37, 133, 219, 373, 681, 831, 1120, 1504
BspDI ATCGAT 2 cut(s) 540, 1483
BspEI TCCGGA 1 cut(s) 809
BspLI GGNNCC 3 cut(s) 271, 339, 1318
BspMAI CTGCAG 1 cut(s) 662
BspPI GGATC 7 cut(s) 35, 536, 801, 1356, 1366, 1454, 1488
BspQI GCTCTTC 1 cut(s) 1227
BspT104I TTCGAA 1 cut(s) 1230
BsrDI GCAATG 1 cut(s) 416
BsrI ACTGG 2 cut(s) 689, 820
BssECI CCNNGG 4 cut(s) 61, 420, 1061, 1263
BssNI GRCGYC 1 cut(s) 382
BssT1I CCWWGG 2 cut(s) 420, 1061
Bst2UI CCWGG 5 cut(s) 286, 720, 1265, 1346, 1448
Bst4CI ACNGT 2 cut(s) 775, 1334
Bst6I CTCTTC 4 cut(s) 119, 876, 1227, 1397
BstACI GRCGYC 1 cut(s) 382
BstAPI GCANNNNNTGC 1 cut(s) 1254
BstBAI YACGTR 2 cut(s) 934, 1427
BstBI TTCGAA 1 cut(s) 1230
BstC8I GCNNGC 1 cut(s) 500
BstDSI CCRYGG 1 cut(s) 420
BstEII GGTNACC 1 cut(s) 965
BstF5I GGATG 4 cut(s) 577, 715, 1192, 1570
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 1 cut(s) 348
BstMAI GTCTC 3 cut(s) 75, 835, 1543
BstMWI GCNNNNNNNGC 2 cut(s) 55, 1254
BstNI CCWGG 5 cut(s) 286, 720, 1265, 1346, 1448
BstNSI RCATGY 1 cut(s) 464
BstPI GGTNACC 1 cut(s) 965
BstSCI CCNGG 6 cut(s) 61, 284, 718, 1263, 1344, 1446
BstSFI CTRYAG 3 cut(s) 658, 781, 1027
BstV2I GAAGAC 2 cut(s) 1134, 1140
BstX2I RGATCY 4 cut(s) 40, 806, 1348, 1459
BstYI RGATCY 4 cut(s) 40, 806, 1348, 1459
Bsu15I ATCGAT 2 cut(s) 540, 1483
BsuTUI ATCGAT 2 cut(s) 540, 1483
BtgI CCRYGG 1 cut(s) 420
BtgZI GCGATG 1 cut(s) 1229
BtrI CACGTC 1 cut(s) 845
BtsCI GGATG 4 cut(s) 577, 715, 1192, 1570
BtsIMutI CAGTG 3 cut(s) 128, 552, 1288
Cac8I GCNNGC 1 cut(s) 500
CaiI CAGNNNCTG 1 cut(s) 1351
CfoI GCGC 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 1316
ClaI ATCGAT 2 cut(s) 540, 1483
CseI GACGC 1 cut(s) 371
Csp6I GTAC 2 cut(s) 910, 1114
CviAII CATG 6 cut(s) 421, 461, 971, 1249, 1309, 1411
CviQI GTAC 2 cut(s) 910, 1114
Eam1104I CTCTTC 4 cut(s) 119, 876, 1227, 1397
EarI CTCTTC 4 cut(s) 119, 876, 1227, 1397
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 420, 1061
Eco24I GRGCYC 1 cut(s) 51
Eco32I GATATC 1 cut(s) 1288
Eco47I GGWCC 1 cut(s) 1316
Eco53kI GAGCTC 1 cut(s) 49
Eco72I CACGTG 1 cut(s) 1427
Eco88I CYCGRG 1 cut(s) 1319
Eco91I GGTNACC 1 cut(s) 965
EcoICRI GAGCTC 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 965
EcoRI GAATTC 1 cut(s) 470
EcoRII CCWGG 5 cut(s) 284, 718, 1263, 1344, 1446
EcoRV GATATC 1 cut(s) 1288
EcoT14I CCWWGG 2 cut(s) 420, 1061
EcoT22I ATGCAT 2 cut(s) 577, 1259
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 2 cut(s) 420, 1061
Esp3I CGTCTC 1 cut(s) 835
FaeI CATG 6 cut(s) 424, 464, 974, 1252, 1312, 1414
FalI AAGNNNNNCTT 2 cut(s) 1260, 1292
FatI CATG 6 cut(s) 420, 460, 970, 1248, 1308, 1410
FbaI TGATCA 1 cut(s) 427
FblI GTMKAC 2 cut(s) 18, 1179
FokI GGATG 4 cut(s) 584, 702, 1199, 1577
FriOI GRGCYC 1 cut(s) 51
FspBI CTAG 2 cut(s) 297, 1152
GlaI GCGC 1 cut(s) 347
GsuI CTGGAG 2 cut(s) 268, 1328
HaeII RGCGCY 1 cut(s) 349
HapII CCGG 2 cut(s) 63, 810
HgaI GACGC 1 cut(s) 371
HhaI GCGC 1 cut(s) 348
Hin1I GRCGYC 1 cut(s) 382
Hin1II CATG 6 cut(s) 424, 464, 974, 1252, 1312, 1414
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HinfI GANTC 1 cut(s) 1057
HpaI GTTAAC 1 cut(s) 609
HpaII CCGG 2 cut(s) 63, 810
HphI GGTGA 2 cut(s) 977, 1330
Hpy166II GTNNAC 6 cut(s) 19, 386, 609, 1071, 1114, 1180
Hpy188I TCNGA 6 cut(s) 228, 533, 671, 1147, 1353, 1494
Hpy188III TCNNGA 6 cut(s) 44, 183, 695, 755, 810, 1157
Hpy8I GTNNAC 6 cut(s) 19, 386, 609, 1071, 1114, 1180
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 6 cut(s) 84, 225, 315, 516, 1079, 1318
HpyCH4III ACNGT 2 cut(s) 775, 1334
HpyCH4IV ACGT 4 cut(s) 844, 933, 1377, 1426
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 1254
HpySE526I ACGT 4 cut(s) 844, 933, 1377, 1426
Hsp92I GRCGYC 1 cut(s) 382
Hsp92II CATG 6 cut(s) 424, 464, 974, 1252, 1312, 1414
HspAI GCGC 1 cut(s) 346
Kpn2I TCCGGA 1 cut(s) 809
Ksp22I TGATCA 1 cut(s) 427
KspAI GTTAAC 1 cut(s) 609
LguI GCTCTTC 1 cut(s) 1227
LmnI GCTCC 4 cut(s) 63, 266, 337, 406
LweI GCATC 3 cut(s) 163, 562, 1252
MaeI CTAG 2 cut(s) 297, 1152
MaeII ACGT 4 cut(s) 844, 933, 1377, 1426
MaeIII GTNAC 4 cut(s) 440, 562, 965, 1427
MfeI CAATTG 1 cut(s) 547
MflI RGATCY 4 cut(s) 40, 806, 1348, 1459
MhlI GDGCHC 2 cut(s) 51, 927
Mph1103I ATGCAT 2 cut(s) 577, 1259
MroI TCCGGA 1 cut(s) 809
MroXI GAANNNNTTC 2 cut(s) 1048, 1272
MseI TTAA 5 cut(s) 608, 801, 854, 894, 1401
MslI CAYNNNNRTG 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 1240
MspI CCGG 2 cut(s) 63, 810
MspR9I CCNGG 6 cut(s) 63, 286, 720, 1265, 1346, 1448
MunI CAATTG 1 cut(s) 547
Mva1269I GAATGC 1 cut(s) 1259
MvaI CCWGG 5 cut(s) 286, 720, 1265, 1346, 1448
MwoI GCNNNNNNNGC 2 cut(s) 55, 1254
NciI CCSGG 1 cut(s) 63
NcoI CCATGG 1 cut(s) 420
NlaIII CATG 6 cut(s) 424, 464, 974, 1252, 1312, 1414
NlaIV GGNNCC 3 cut(s) 271, 339, 1318
NmuCI GTSAC 2 cut(s) 965, 1427
NsiI ATGCAT 2 cut(s) 577, 1259
NspI RCATGY 1 cut(s) 464
NspV TTCGAA 1 cut(s) 1230
PciI ACATGT 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 1227
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 1 cut(s) 1259
PdmI GAANNNNTTC 2 cut(s) 1048, 1272
PfeI GAWTC 1 cut(s) 1057
PfoI TCCNGGA 2 cut(s) 718, 1344
PmaCI CACGTG 1 cut(s) 1427
PmlI CACGTG 1 cut(s) 1427
Ppu21I YACGTR 2 cut(s) 934, 1427
PscI ACATGT 1 cut(s) 460
PshBI ATTAAT 1 cut(s) 894
Psp124BI GAGCTC 1 cut(s) 51
Psp1406I AACGTT 1 cut(s) 1377
Psp6I CCWGG 5 cut(s) 284, 718, 1263, 1344, 1446
PspCI CACGTG 1 cut(s) 1427
PspEI GGTNACC 1 cut(s) 965
PspGI CCWGG 5 cut(s) 284, 718, 1263, 1344, 1446
PspN4I GGNNCC 3 cut(s) 271, 339, 1318
PspPI GGNCC 1 cut(s) 1316
PstI CTGCAG 1 cut(s) 662
PstNI CAGNNNCTG 1 cut(s) 1351
PsuI RGATCY 4 cut(s) 40, 806, 1348, 1459
PvuII CAGCTG 1 cut(s) 1240
RsaI GTAC 2 cut(s) 911, 1115
RsaNI GTAC 2 cut(s) 910, 1114
RseI CAYNNNNRTG 1 cut(s) 465
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 1227
SaqAI TTAA 5 cut(s) 608, 801, 854, 894, 1401
Sau96I GGNCC 1 cut(s) 1316
ScrFI CCNGG 6 cut(s) 63, 286, 720, 1265, 1346, 1448
SduI GDGCHC 2 cut(s) 51, 927
SfaNI GCATC 3 cut(s) 163, 562, 1252
SfcI CTRYAG 3 cut(s) 658, 781, 1027
SfuI TTCGAA 1 cut(s) 1230
SinI GGWCC 1 cut(s) 1316
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 2 cut(s) 332, 1157
SmoI CTYRAG 2 cut(s) 332, 1157
SspI AATATT 2 cut(s) 789, 1047
SspMI CTAG 2 cut(s) 297, 1152
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 6 cut(s) 61, 284, 718, 1263, 1344, 1446
StyI CCWWGG 2 cut(s) 420, 1061
TaaI ACNGT 2 cut(s) 775, 1334
TaiI ACGT 4 cut(s) 847, 936, 1380, 1429
TaqI TCGA 5 cut(s) 540, 1230, 1361, 1483, 1575
TatI WGTACW 1 cut(s) 1113
TfiI GAWTC 1 cut(s) 1057
Tru1I TTAA 5 cut(s) 608, 801, 854, 894, 1401
Tru9I TTAA 5 cut(s) 608, 801, 854, 894, 1401
TscAI CASTG 3 cut(s) 128, 559, 1288
TseFI GTSAC 2 cut(s) 965, 1427
Tsp45I GTSAC 2 cut(s) 965, 1427
TspDTI ATGAA 8 cut(s) 20, 483, 894, 1108, 1116, 1399, 1548, 1581
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 3 cut(s) 128, 559, 1288
VpaK11BI GGWCC 1 cut(s) 1316
VspI ATTAAT 1 cut(s) 894
XapI RAATTY 6 cut(s) 208, 470, 728, 850, 947, 1465
XceI RCATGY 1 cut(s) 464
XmiI GTMKAC 2 cut(s) 18, 1179
XmnI GAANNNNTTC 2 cut(s) 1048, 1272
XspI CTAG 2 cut(s) 297, 1152
Zsp2I ATGCAT 2 cut(s) 577, 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.